Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0016949 Sechium edule HOM05D005062 ORTHO05D006410 1.2e-192 676.4 363 100.0
CsaV3_2G034960 Cucumis sativus L. HOM05D005062 ORTHO05D006410 3.0e-151 538.9 368 81.2
CiPaw.13G040200 Carya illinoinensis HOM05D005062 ORTHO05D006410 4.4e-118 428.7 364 65.4
Cpa.g.sc183.10 Carica papaya HOM05D005062 ORTHO05D006410 2.9e-117 426.0 364 65.7
Cfa010314 Carpinus fangiana HOM05D005062 ORTHO05D006410 9.2e-116 421.0 359 64.6
Duzib106G1045 Durio zibethinus HOM05D005062 ORTHO05D006410 1.2e-115 420.6 358 67.3
MD02G1255900 Malus domestica HOM05D005062 ORTHO05D006410 8.6e-114 414.5 364 64.8
Atru.chr12.1008 Acer truncatum HOM05D005062 ORTHO05D006410 1.1e-113 414.1 356 64.3
QL04p046667 Quercus lobata HOM05D005062 ORTHO05D006410 7.3e-113 411.4 390 60.5
Eucgr.J00992 Eucalyptus grandis HOM05D005062 ORTHO05D006410 3.6e-112 409.1 361 63.2
PGR044G2170 Punica granatum HOM05D005062 ORTHO05D006410 1.8e-111 406.8 282 76.2
Manes.10G058650 Manihot esculenta HOM05D005062 ORTHO05D006410 4.0e-111 405.6 360 62.2
CSS0050380 Camellia sinensis var. sinensis HOM05D005062 ORTHO05D006410 6.8e-111 404.8 368 63.0
Dinv11848 Davidia involucrata HOM05D005062 ORTHO05D006410 6.8e-111 404.8 282 74.8
Gohir.A12G092722 Gossypium hirsutum HOM05D005062 ORTHO05D006410 8.9e-111 404.4 361 65.7
Gorai.008G099000 Gossypium raimondii HOM05D005062 ORTHO05D006410 1.2e-110 404.1 361 65.4
FvH4_7g05590 Fragaria vesca HOM05D005062 ORTHO05D006410 2.4e-108 396.4 282 74.8
FAN01G3081 Fragaria x ananassa HOM05D005062 ORTHO05D006410 2.4e-108 396.4 282 74.8
FAN06G1220 Fragaria x ananassa HOM05D005062 ORTHO05D006410 2.4e-108 396.4 282 74.8
Potri.008G021600 Populus trichocarpa HOM05D005062 ORTHO05D006410 7.1e-108 394.8 358 59.8
RcHm_v2.0_Chr1g0332571 Rosa chinensis HOM05D005062 ORTHO05D006410 7.1e-108 394.8 365 63.6
THA.LOC104824209 Tarenaya hassleriana HOM05D005062 ORTHO05D006410 1.2e-107 394.0 282 73.4
TAR623G1543 Trochodendron aralioides HOM05D005062 ORTHO05D006410 1.2e-107 394.0 357 61.3
FAN10G1073 Fragaria x ananassa HOM05D005062 ORTHO05D006410 2.7e-107 392.9 282 74.5
Sabra08G0014600 Salix brachista HOM05D005062 ORTHO05D006410 3.5e-107 392.5 360 60.0
GSVIVG01011284001 Vitis vinifera HOM05D005062 ORTHO05D006410 4.6e-107 392.1 311 70.4
ECA233G2289 Erigeron canadensis HOM05D005062 ORTHO05D006410 1.7e-106 390.2 372 59.4
FAN23G1954 Fragaria x ananassa HOM05D005062 ORTHO05D006410 5.1e-106 388.7 364 63.2
Oeu026579.1 Olea europaea HOM05D005062 ORTHO05D006410 5.1e-106 388.7 290 71.4
CSS0021342 Camellia sinensis var. sinensis HOM05D005062 ORTHO05D006410 8.7e-106 387.9 378 60.8
DCAR_006341 Daucus carota HOM05D005062 ORTHO05D006410 8.7e-106 387.9 292 68.2
Migut.F01613 Erythranthe guttata HOM05D005062 ORTHO05D006410 8.7e-106 387.9 282 72.7
FAN23G1474 Fragaria x ananassa HOM05D005062 ORTHO05D006410 3.3e-105 386.0 282 74.5
Glyma.10G111800 Glycine max HOM05D005062 ORTHO05D006410 7.3e-105 384.8 300 69.0
AUR62034504 Chenopodium quinoa HOM05D005062 ORTHO05D006410 1.6e-104 383.6 356 58.7
Lalb_Chr19g0129181 Lupinus albus HOM05D005062 ORTHO05D006410 1.6e-104 383.6 283 70.0
HanXRQChr08g0217771 Helianthus annuus HOM05D005062 ORTHO05D006410 8.1e-104 381.3 376 58.0
Medtr1g050462 Medicago truncatula HOM05D005062 ORTHO05D006410 1.4e-103 380.6 367 60.5
AT3G56160 Arabidopsis thaliana HOM05D005062 ORTHO05D006410 1.8e-103 380.2 362 59.9
Lj5g0026270 Lotus japonicus HOM05D005062 ORTHO05D006410 4.0e-103 379.0 300 66.7
Lsat_1_v5_gn_8_23960 Lactuca sativa HOM05D005062 ORTHO05D006410 5.2e-103 378.6 282 70.2
MSTRG.8110 Avicennia marina HOM05D005062 ORTHO05D006410 9.0e-103 377.9 339 61.1
Ca_12731_v3 Cicer arietinum L. HOM05D005062 ORTHO05D006410 1.2e-102 377.5 280 70.0
Solyc07g014740.3 Solanum lycopersicum HOM05D005062 ORTHO05D006410 1.2e-102 377.5 282 69.9
Phvul.007G247700 Phaseolus vulgaris HOM05D005062 ORTHO05D006410 1.5e-102 377.1 301 67.1
AL5G37480 Arabidopsis lyrata HOM05D005062 ORTHO05D006410 2.6e-102 376.3 346 60.4
A09p49130 Brassica napus HOM05D002435 ORTHO05D002550 2.6e-102 376.3 350 62.0
BraA09t40366Z Brassica rapa HOM05D005062 ORTHO05D006410 2.6e-102 376.3 350 62.0
SalBow6G6867 Salvia bowleyana HOM05D005062 ORTHO05D006410 3.4e-102 375.9 282 69.5
Sopen07g005620 Solanum pennellii HOM05D000002 ORTHO05D000001 3.4e-102 375.9 366 57.7
BcaC07g39930 Brassica carinata HOM05D002435 ORTHO05D002550 5.8e-102 375.2 352 61.4
BolC8t50765H Brassica oleracea HOM05D002435 ORTHO05D002550 5.8e-102 375.2 352 61.4
arahy.Tifrunner.gnm1.ann1.ZAGE2X Arachis hypogaea HOM05D005062 ORTHO05D006410 1.3e-101 374.0 306 64.7
CAN.G54.5 Capsicum annuum HOM05D005062 ORTHO05D006410 1.3e-101 374.0 282 69.5
Sp5g06340 Schrenkiella parvula HOM05D005062 ORTHO05D006410 2.9e-101 372.9 348 60.6
arahy.Tifrunner.gnm1.ann1.BZ57JC Arachis hypogaea HOM05D005062 ORTHO05D006410 1.1e-100 370.9 306 64.1
BcaB01g00026 Brassica carinata HOM05D002435 ORTHO05D002550 1.9e-100 370.2 296 68.2
Nn2g14130 Nelumbo nucifera HOM05D005062 ORTHO05D006410 7.1e-100 368.2 282 68.8
FAN23G2695 Fragaria x ananassa HOM05D005062 ORTHO05D006410 1.2e-99 367.5 408 56.4
C08p31440 Brassica napus HOM05D002435 ORTHO05D002550 1.6e-99 367.1 305 66.9
Nitab4.5_0010225g0010 Nicotiana tabacum HOM05D005062 ORTHO05D006410 2.1e-99 366.7 362 59.1
HanXRQChr11g0342201 Helianthus annuus HOM05D005062 ORTHO05D006410 1.3e-98 364.0 372 57.0
Thecc.10G106400 Theobroma cacao HOM05D005062 ORTHO05D006410 1.7e-98 363.6 317 65.0
Aqoxy2G01214 Aquilegia oxysepala HOM05D005062 ORTHO05D006410 5.1e-98 362.1 337 59.1
Cc02_g09770 Coffea canephora HOM05D005062 ORTHO05D006410 7.3e-97 358.2 293 65.2
Thhalv10006005m.g Eutrema salsugineum HOM05D005062 ORTHO05D006410 1.3e-96 357.5 336 61.9
Actinidia18593 Actinidia chinensis HOM05D000444 ORTHO05D000489 3.1e-95 352.8 290 66.9
CDE06G2329 Ceratophyllum demersum HOM05D005062 ORTHO05D006410 5.3e-95 352.1 282 64.2
Lsat_1_v5_gn_2_104621 Lactuca sativa HOM05D005062 ORTHO05D006410 6.9e-95 351.7 288 64.9
Gohir.D12G091480 Gossypium hirsutum HOM05D005062 ORTHO05D006410 9.0e-95 351.3 322 64.6
ECA238G3155 Erigeron canadensis HOM05D005062 ORTHO05D006410 1.5e-94 350.5 318 59.1
Rhsim03G0099700 Rhododendron simsii HOM05D005062 ORTHO05D006410 1.7e-93 347.1 442 49.8
Peaxi162Scf00235g10011 Petunia axillaris HOM05D005062 ORTHO05D006410 1.1e-92 344.4 370 54.6
ATR0081G026 Amborella trichopoda HOM05D005062 ORTHO05D006410 4.6e-91 339.0 308 57.5
CiPaw.14G101300 Carya illinoinensis HOM05D005062 ORTHO05D006410 1.1e-89 334.3 354 52.5
FAN03G1004 Fragaria x ananassa HOM05D005062 ORTHO05D006410 1.5e-89 334.0 328 60.1
GSVIVG01036146001 Vitis vinifera HOM05D005062 ORTHO05D006410 1.6e-88 330.5 282 61.3
Os02g0531200 Oryza sativa ssp. japonica HOM05D005062 ORTHO05D006410 2.1e-88 330.1 281 60.5
HanXRQChr08g0217571 Helianthus annuus HOM05D005062 ORTHO05D006410 1.1e-87 327.8 280 60.7
Sc12g0004460 Simmondsia chinensis HOM05D005062 ORTHO05D006410 1.8e-87 327.0 280 62.1
TPR.G10638 Trifolium pratense HOM05D005062 ORTHO05D006410 2.4e-87 326.6 229 72.9
Eucgr.B03869 Eucalyptus grandis HOM05D005062 ORTHO05D006410 1.7e-85 320.5 285 56.8
PGR102G2753 Punica granatum HOM05D005062 ORTHO05D006410 7.1e-84 315.1 339 51.9
HPP92_007815 Vanilla planifolia HOM05D005062 ORTHO05D006410 1.8e-82 310.5 282 57.4
Ciclev10032297m.g Citrus clementina HOM05D005062 ORTHO05D006410 4.8e-80 302.4 284 60.6
Ah.09g232820 Amaranthus hybridus HOM05D005062 ORTHO05D006410 2.6e-78 296.6 307 54.1
EL10As25g24233 Beta vulgaris HOM05D005062 ORTHO05D006410 1.0e-77 294.7 429 43.8
Ah.08g215800 Amaranthus hybridus HOM05D005062 ORTHO05D006410 1.7e-77 293.9 282 55.0
VMungo0720G3089 Vigna mungo HOM05D000444 ORTHO05D000489 1.3e-72 277.7 399 44.6
Zm00001eb242730 Zea mays HOM05D005062 ORTHO05D006410 2.2e-72 276.9 220 62.7
Prupe.2G079400 Prunus persica HOM05D005062 ORTHO05D006410 1.1e-71 274.6 264 61.7
Lj3A928T57 Lonicera japonica HOM05D005062 ORTHO05D006410 3.8e-69 266.2 234 65.4
Sc20g0001180 Simmondsia chinensis HOM05D003607 ORTHO05D004049 6.5e-69 265.4 194 73.2
MD02G1256100 Malus domestica HOM05D005062 ORTHO05D006410 9.4e-68 261.5 251 58.6
Zm00001eb296300 Zea mays HOM05D005062 ORTHO05D006410 1.2e-67 261.2 210 62.4
Hund06778 Selenicereus undatus HOM05D005062 ORTHO05D006410 1.8e-66 257.3 297 50.2
CiPaw.14G101100 Carya illinoinensis HOM05D005062 ORTHO05D006410 3.9e-66 256.1 348 46.3
Carub.0005s2291 Capsella rubella HOM05D005062 ORTHO05D006410 2.4e-63 246.9 197 67.0
unitig_578.g16343 Utricularia gibba HOM05D005062 ORTHO05D006410 8.5e-61 238.4 272 52.2
AagrBONN_evm.TU.Sc2ySwM_117.1142 Anthoceros agrestis HOM05D005062 ORTHO05D006410 7.2e-60 235.3 260 50.8
CARHR166310 Cardamine hirsuta HOM05D005062 ORTHO05D006410 3.8e-53 213.0 166 69.3
ClCG02G008710 Citrullus lanatus HOM05D005062 ORTHO05D006410 6.5e-53 212.2 159 73.0
AUR62009772 Chenopodium quinoa HOM05D005062 ORTHO05D006410 3.2e-52 209.9 294 45.6
SMO347G0520 Selaginella moellendorffii HOM05D005062 ORTHO05D006410 3.7e-48 196.4 280 42.5
SGA_v2.0_scaffold13G06459 Striga asiatica HOM05D005062 ORTHO05D006410 4.1e-47 193.0 302 42.4
Haze_02484 Corylus avellana HOM05D005062 ORTHO05D006410 5.9e-46 189.1 184 60.3
Pp3c3_30210 Physcomitrium patens HOM05D005062 ORTHO05D006410 1.0e-45 188.3 268 44.0
EL10Ac7g15813 Beta vulgaris HOM05D005062 ORTHO05D006410 1.9e-44 184.1 368 35.9
Mapoly0046s0115 Marchantia polymorpha HOM05D005062 ORTHO05D006410 3.0e-42 176.8 299 36.8
Haze_02485 Corylus avellana HOM05D005062 ORTHO05D006410 7.5e-41 172.2 203 49.3
CBR_g48207 Chara braunii HOM05D000019 ORTHO05D000048 2.7e-38 163.7 216 40.7
Cre09.g395700 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 2.3e-34 150.6 298 35.2
PRCOL_00003606 Prasinoderma coloniale HOM05D005062 ORTHO05D006410 1.2e-33 148.3 267 37.5
AUR62039218 Chenopodium quinoa HOM05D005062 ORTHO05D006410 1.5e-33 147.9 282 35.5
Duzib128G0173 Durio zibethinus HOM05D005062 ORTHO05D006410 5.7e-33 146.0 152 57.2
FAN06G0036 Fragaria x ananassa HOM05D005062 ORTHO05D006410 2.3e-29 134.0 124 62.9
Haze_23392 Corylus avellana HOM05D005062 ORTHO05D006410 1.9e-28 131.0 184 44.0
A02p12720 Brassica napus HOM05D005062 ORTHO05D006410 5.5e-28 129.4 120 64.2
Cre09.g393250 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 9.5e-28 128.6 268 35.1
QL01p012462 Quercus lobata HOM05D005062 ORTHO05D006410 2.1e-27 127.5 116 55.2
COL.COLO4_24556 Corchorus olitorius HOM05D005062 ORTHO05D006410 1.0e-26 125.2 84 70.2
FAN01G2457 Fragaria x ananassa HOM05D005062 ORTHO05D006410 6.8e-26 122.5 82 80.5
Psat6g129720 Pisum sativum HOM05D005062 ORTHO05D006410 6.8e-26 122.5 94 67.0
FvH4_7g05870 Fragaria vesca HOM05D005062 ORTHO05D006410 1.2e-25 121.7 117 61.5
Cre02.g147450 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 2.6e-25 120.6 338 31.4
Lj3C928T13 Lonicera japonica HOM05D005062 ORTHO05D006410 1.8e-23 114.4 73 69.9
Cre12.g521950 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 4.1e-23 113.2 264 30.7
MCO15G192 Micromonas commoda HOM05D005062 ORTHO05D006410 5.4e-23 112.8 246 31.3
GSVIVG01034679001 Vitis vinifera HOM05D005062 ORTHO05D006410 1.1e-20 105.1 67 85.1
BraA02t06329Z Brassica rapa HOM05D005062 ORTHO05D006410 1.5e-20 104.8 80 72.5
Cre06.g250450 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 2.5e-20 104.0 254 29.5
MD02G1256200 Malus domestica HOM05D005062 ORTHO05D006410 1.2e-19 101.7 72 70.8
SEGI_26426 Sequoiadendron giganteum HOM05D005062 ORTHO05D006410 4.7e-19 99.8 73 63.0
Hma1.2p1_0165F.1_g073310 Hydrangea macrophylla HOM05D005062 ORTHO05D006410 3.1e-18 97.1 66 66.7
Hma1.2p1_1068F.1_g253985 Hydrangea macrophylla HOM05D005062 ORTHO05D006410 2.0e-17 94.4 72 65.3
Psat6g129760 Pisum sativum HOM05D005062 ORTHO05D006410 4.4e-17 93.2 153 39.2
QL01p012456 Quercus lobata HOM05D005062 ORTHO05D006410 9.8e-17 92.0 80 57.5
Ca_00262_v3 Cicer arietinum L. HOM05D005062 ORTHO05D006410 2.9e-16 90.5 174 36.8
Haze_23393 Corylus avellana HOM05D005062 ORTHO05D006410 2.4e-15 87.4 73 57.5
Hund18750 Selenicereus undatus HOM05D005062 ORTHO05D006410 5.4e-15 86.3 114 44.7
RcHm_v2.0_Chr1g0332551 Rosa chinensis HOM05D005062 ORTHO05D006410 1.3e-13 81.6 59 64.4
Dinv42565 Davidia involucrata HOM05D005062 ORTHO05D006410 2.3e-13 80.9 115 45.2
SEGI_01082 Sequoiadendron giganteum HOM05D005062 ORTHO05D006410 3.0e-13 80.5 59 69.5
RcHm_v2.0_Chr1g0332541 Rosa chinensis HOM05D005062 ORTHO05D006410 1.1e-12 78.6 62 62.9
SEGI_13629 Sequoiadendron giganteum HOM05D005062 ORTHO05D006410 4.0e-10 70.1 57 59.6
Cfa010034 Carpinus fangiana HOM05D005062 ORTHO05D006410 2.6e-09 67.4 69 47.8
Solyc12g005410.2 Solanum lycopersicum HOM05D000943 ORTHO05D008314 9.8e-09 65.5 357 24.6
FAN25G0219 Fragaria x ananassa HOM05D000943 ORTHO05D008314 1.7e-08 64.7 287 24.7
Sopen12g001380 Solanum pennellii HOM05D000943 ORTHO05D008314 1.7e-08 64.7 357 24.4
FAN11G0107 Fragaria x ananassa HOM05D000943 ORTHO05D008314 3.7e-08 63.5 359 24.5
FAN16G1964 Fragaria x ananassa HOM05D000943 ORTHO05D008314 3.7e-08 63.5 359 24.5
Aqoxy1G01881 Aquilegia oxysepala HOM05D000943 ORTHO05D008314 4.9e-08 63.2 365 23.8
Dinv26700 Davidia involucrata HOM05D000943 ORTHO05D006658 4.9e-08 63.2 304 24.7
HanXRQChr10g0305601 Helianthus annuus HOM05D000943 ORTHO05D008314 4.9e-08 63.2 299 24.7
FAN21G2606 Fragaria x ananassa HOM05D000943 ORTHO05D008314 6.4e-08 62.8 287 24.4
CANSAT56G1032 Cannabis sativa HOM05D000943 ORTHO05D008314 8.3e-08 62.4 330 22.7
Ah.04g163940 Amaranthus hybridus HOM05D000943 ORTHO05D008314 1.1e-07 62.0 269 26.0
PGSC0003DMG400019027 Solanum tuberosum HOM05D000943 ORTHO05D008314 1.1e-07 62.0 352 22.7
unitig_62.g23077 Utricularia gibba HOM05D000943 ORTHO05D008314 1.1e-07 62.0 278 25.5
Manes.03G078100 Manihot esculenta HOM05D000943 ORTHO05D008314 1.9e-07 61.2 304 24.7
ClCG11G017120 Citrullus lanatus HOM05D000943 ORTHO05D008314 2.4e-07 60.8 366 25.1
Thecc.07G135000 Theobroma cacao HOM05D000943 ORTHO05D008314 2.4e-07 60.8 328 23.5
ECA234G1223 Erigeron canadensis HOM05D005685 ORTHO05D007046 3.2e-07 60.5 210 27.6
TWI38G0474 Tripterygium wilfordii HOM05D000943 ORTHO05D008314 3.2e-07 60.5 304 23.7
vmacro09420 Vaccinium macrocarpon HOM05D000943 ORTHO05D008314 3.2e-07 60.5 306 24.8
AUR62013941 Chenopodium quinoa HOM05D000943 ORTHO05D008314 5.4e-07 59.7 367 24.0
COL.COLO4_03605 Corchorus olitorius HOM05D000943 ORTHO05D008314 5.4e-07 59.7 278 24.1
Mapoly0050s0070 Marchantia polymorpha HOM05D000943 ORTHO05D008314 5.4e-07 59.7 270 25.9
PGR031G3430 Punica granatum HOM05D000943 ORTHO05D008314 7.0e-07 59.3 275 23.3
VMungo1080G0497 Vigna mungo HOM05D000943 ORTHO05D008314 7.0e-07 59.3 257 24.9
AUR62019668 Chenopodium quinoa HOM05D000943 ORTHO05D008314 9.2e-07 58.9 292 23.3
CsaV3_4G032780 Cucumis sativus L. HOM05D000943 ORTHO05D008314 9.2e-07 58.9 277 24.9
MD03G1251200 Malus domestica HOM05D000943 ORTHO05D008314 9.2e-07 58.9 210 27.6
Prupe.4G155400 Prunus persica HOM05D000943 ORTHO05D008314 1.6e-06 58.2 234 25.6
RcHm_v2.0_Chr5g0029301 Rosa chinensis HOM05D000943 ORTHO05D008314 2.1e-06 57.8 287 24.4
MELO3C025675.2 Cucumis melo HOM05D000943 ORTHO05D008314 2.7e-06 57.4 366 24.6
DCAR_017587 Daucus carota HOM05D000943 ORTHO05D008314 2.7e-06 57.4 237 25.7
MCO11G881 Micromonas commoda HOM05D005062 ORTHO05D028578 3.5e-06 57.0 204 27.0
Peaxi162Scf00000g76016 Petunia axillaris HOM05D000943 ORTHO05D008314 3.5e-06 57.0 210 26.2
Cpa.g.sc682.5 Carica papaya HOM05D000943 ORTHO05D008314 4.6e-06 56.6 234 24.4


User provided reference genes

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