Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0016917 Sechium edule HOM05D006965 ORTHO05D008652 9.5e-203 709.9 347 100.0
ClCG10G012640 Citrullus lanatus HOM05D006965 ORTHO05D008652 2.6e-168 595.5 356 81.7
CsaV3_3G032450 Cucumis sativus L. HOM05D006965 ORTHO05D008652 1.3e-167 593.2 347 82.1
MELO3C023943.2 Cucumis melo HOM05D006965 ORTHO05D008652 4.2e-158 561.6 348 79.3
MD02G1318500 Malus domestica HOM05D006965 ORTHO05D008652 1.4e-121 440.3 344 61.9
QL04p003153 Quercus lobata HOM05D006965 ORTHO05D008652 1.4e-121 440.3 346 62.4
MD07G1002700 Malus domestica HOM05D006965 ORTHO05D008652 4.1e-121 438.7 358 60.3
QL04p000072 Quercus lobata HOM05D006965 ORTHO05D008652 5.3e-121 438.3 346 62.4
QL04p003146 Quercus lobata HOM05D006965 ORTHO05D008652 2.2e-119 433.0 346 61.8
Cfa004805 Carpinus fangiana HOM05D006965 ORTHO05D008652 6.8e-116 421.4 344 59.9
CiPaw.13G000900 Carya illinoinensis HOM05D006965 ORTHO05D008652 8.8e-116 421.0 346 59.8
FAN01G2144 Fragaria x ananassa HOM05D006965 ORTHO05D008652 1.2e-115 420.6 346 59.8
Manes.10G151000 Manihot esculenta HOM05D006965 ORTHO05D008652 1.2e-115 420.6 346 58.4
TPR.G11733 Trifolium pratense HOM05D006965 ORTHO05D008652 1.2e-115 420.6 349 58.5
Nn2g15664 Nelumbo nucifera HOM05D006965 ORTHO05D008652 1.5e-115 420.2 346 60.1
TAR633G1267 Trochodendron aralioides HOM05D006965 ORTHO05D008652 2.0e-115 419.9 347 60.8
Ciclev10031978m.g Citrus clementina HOM05D006965 ORTHO05D008652 5.7e-115 418.3 350 60.0
Phvul.005G039600 Phaseolus vulgaris HOM05D006965 ORTHO05D008652 9.7e-115 417.5 349 58.7
Actinidia32338 Actinidia chinensis HOM05D006965 ORTHO05D008652 1.3e-114 417.2 346 59.5
GSVIVG01001368001 Vitis vinifera HOM05D006965 ORTHO05D008652 1.7e-114 416.8 322 63.4
Lj3g0017203 Lotus japonicus HOM05D006965 ORTHO05D008652 3.7e-114 415.6 350 59.1
Lalb_Chr25g0283521 Lupinus albus HOM05D006965 ORTHO05D008652 3.7e-114 415.6 346 57.5
Cc02_g27080 Coffea canephora HOM05D006965 ORTHO05D008652 4.8e-114 415.2 347 60.5
Haze_10398 Corylus avellana HOM05D006965 ORTHO05D008652 8.3e-114 414.5 353 58.1
PGSC0003DMG400006312 Solanum tuberosum HOM05D006965 ORTHO05D008652 1.1e-113 414.1 347 58.5
RcHm_v2.0_Chr1g0313421 Rosa chinensis HOM05D006965 ORTHO05D008652 2.4e-113 412.9 346 59.0
FvH4_7g00170 Fragaria vesca HOM05D006965 ORTHO05D008652 4.1e-113 412.1 364 56.9
Haze_10419 Corylus avellana HOM05D006965 ORTHO05D008652 7.0e-113 411.4 332 59.6
Haze_10424 Corylus avellana HOM05D006965 ORTHO05D008652 7.0e-113 411.4 332 59.6
CSS0026631 Camellia sinensis var. sinensis HOM05D006965 ORTHO05D008652 1.6e-112 410.2 346 59.2
Gohir.A08G026760 Gossypium hirsutum HOM05D006965 ORTHO05D008652 2.7e-112 409.5 354 57.9
Glyma.08G149400 Glycine max HOM05D006965 ORTHO05D008652 4.5e-112 408.7 347 57.6
Psat1g128200 Pisum sativum HOM05D006965 ORTHO05D008652 1.0e-111 407.5 346 56.6
Gohir.D08G037500 Gossypium hirsutum HOM05D006965 ORTHO05D008652 1.3e-111 407.1 354 57.6
CAN.G261.10 Capsicum annuum HOM05D006965 ORTHO05D008652 2.2e-111 406.4 348 58.3
PSO339G5860 Papaver somniferum HOM05D006965 ORTHO05D008652 2.2e-111 406.4 348 57.2
CANSAT78G1981 Cannabis sativa HOM05D006965 ORTHO05D008652 5.0e-111 405.2 350 56.9
Solyc01g073930.3 Solanum lycopersicum HOM05D006965 ORTHO05D008652 6.5e-111 404.8 347 57.6
Nitab4.5_0000892g0120 Nicotiana tabacum HOM05D006965 ORTHO05D008652 8.5e-111 404.4 348 57.2
Nitab4.5_0004592g0020 Nicotiana tabacum HOM05D006965 ORTHO05D008652 8.5e-111 404.4 349 56.7
Gorai.004G035500 Gossypium raimondii HOM05D006965 ORTHO05D008652 1.1e-110 404.1 354 57.3
VMungo1080G1640 Vigna mungo HOM05D006965 ORTHO05D008652 1.5e-110 403.7 330 59.4
Sopen01g033500 Solanum pennellii HOM05D006965 ORTHO05D008652 1.9e-110 403.3 347 57.6
PSO384G4145 Papaver somniferum HOM05D006965 ORTHO05D008652 2.5e-110 402.9 348 56.9
Medtr2g060820 Medicago truncatula HOM05D006965 ORTHO05D008652 4.7e-109 398.7 326 58.0
vmacro13617 Vaccinium macrocarpon HOM05D006965 ORTHO05D008652 6.1e-109 398.3 346 58.1
Thecc.01G416200 Theobroma cacao HOM05D006965 ORTHO05D008652 8.0e-109 397.9 355 56.1
Ca_02931_v3 Cicer arietinum L. HOM05D006965 ORTHO05D008652 1.4e-108 397.1 328 58.2
Eucgr.G02572 Eucalyptus grandis HOM05D006965 ORTHO05D008652 1.4e-108 397.1 348 57.2
Sabra09G0014600 Salix brachista HOM05D006965 ORTHO05D008652 1.4e-108 397.1 346 55.8
Sc12g0002350 Simmondsia chinensis HOM05D006965 ORTHO05D008652 4.0e-108 395.6 344 56.7
Potri.009G023200 Populus trichocarpa HOM05D006965 ORTHO05D008652 5.2e-108 395.2 346 56.6
Atru.chr11.2694 Acer truncatum HOM05D006965 ORTHO05D008652 4.8e-106 388.7 350 56.6
FAN06G0111 Fragaria x ananassa HOM05D006965 ORTHO05D008652 3.1e-105 386.0 348 56.6
FAN10G4273 Fragaria x ananassa HOM05D006965 ORTHO05D008652 4.1e-105 385.6 364 54.7
MSTRG.17063 Avicennia marina HOM05D006965 ORTHO05D008652 7.0e-105 384.8 352 55.7
Migut.B01364 Erythranthe guttata HOM05D006965 ORTHO05D008652 7.0e-105 384.8 349 57.0
MBI04_g33895_MAGBIO Magnolia biondii HOM05D006965 ORTHO05D008652 7.0e-105 384.8 349 56.4
TWI73G0408 Tripterygium wilfordii HOM05D006965 ORTHO05D008652 3.5e-104 382.5 347 55.9
THA.LOC104827577 Tarenaya hassleriana HOM05D006965 ORTHO05D008652 1.7e-103 380.2 351 53.3
TAR362G1148 Trochodendron aralioides HOM05D006965 ORTHO05D008652 1.9e-102 376.7 314 61.1
ECA248G1794 Erigeron canadensis HOM05D006965 ORTHO05D008652 2.5e-102 376.3 349 56.7
SalBow5G3371 Salvia bowleyana HOM05D006965 ORTHO05D008652 2.8e-101 372.9 328 57.0
FAN01G0465 Fragaria x ananassa HOM05D006965 ORTHO05D008652 3.6e-101 372.5 337 55.2
AL4G43420 Arabidopsis lyrata HOM05D006965 ORTHO05D008652 1.8e-100 370.2 352 54.0
PGR004G0492 Punica granatum HOM05D006965 ORTHO05D008652 1.8e-100 370.2 327 57.2
BcaB02g08813 Brassica carinata HOM05D006965 ORTHO05D008652 2.3e-100 369.8 349 51.9
Prupe.2G004200 Prunus persica HOM05D006965 ORTHO05D008652 2.3e-100 369.8 266 66.5
Carub.0004s2700 Capsella rubella HOM05D006965 ORTHO05D008652 2.0e-99 366.7 351 51.0
SGA_v2.0_scaffold5G03114 Striga asiatica HOM05D006965 ORTHO05D008652 2.0e-99 366.7 345 56.5
Rhsim07G0050600 Rhododendron simsii HOM05D006965 ORTHO05D008652 2.6e-99 366.3 329 55.9
Aqoxy1G00028 Aquilegia oxysepala HOM05D006965 ORTHO05D008652 9.8e-99 364.4 346 52.6
BraA05t19431Z Brassica rapa HOM05D006965 ORTHO05D008652 2.8e-98 362.8 351 51.9
BcaC02g12316 Brassica carinata HOM05D006965 ORTHO05D008652 3.2e-97 359.4 354 50.6
C04p05300 Brassica napus HOM05D006965 ORTHO05D008652 3.2e-97 359.4 354 50.6
Thhalv10001527m.g Eutrema salsugineum HOM05D006965 ORTHO05D008652 3.2e-97 359.4 349 50.1
AUR62012162 Chenopodium quinoa HOM05D006965 ORTHO05D008652 2.0e-96 356.7 345 53.0
Sp4g26490 Schrenkiella parvula HOM05D006965 ORTHO05D008652 1.0e-95 354.4 349 51.0
A05p04570 Brassica napus HOM05D006965 ORTHO05D008652 1.3e-95 354.0 351 51.0
AT2G44420 Arabidopsis thaliana HOM05D006965 ORTHO05D008652 1.9e-94 350.1 380 48.4
Hund16040 Selenicereus undatus HOM05D006965 ORTHO05D008652 1.6e-93 347.1 339 54.6
BolC4t22170H Brassica oleracea HOM05D006965 ORTHO05D008652 2.8e-93 346.3 378 47.4
Aa31LG1G25970 Aethionema arabicum HOM05D006965 ORTHO05D008652 3.1e-92 342.8 366 47.5
Zm00001eb275720 Zea mays HOM05D006965 ORTHO05D008652 2.0e-91 340.1 356 51.7
AUR62022798 Chenopodium quinoa HOM05D006965 ORTHO05D008652 1.3e-90 337.4 345 51.3
Hma1.2p1_2998F.1_g331493 Hydrangea macrophylla HOM05D006965 ORTHO05D008652 1.6e-88 330.5 255 63.5
Dinv43490 Davidia involucrata HOM05D006965 ORTHO05D008652 2.7e-88 329.7 272 61.0
Hma1.2p1_2998F.1_g331496 Hydrangea macrophylla HOM05D006965 ORTHO05D008652 1.0e-87 327.8 252 63.9
Os06g0618150 Oryza sativa ssp. japonica HOM05D006965 ORTHO05D008652 1.3e-87 327.4 334 51.5
HanXRQChr01g0018681 Helianthus annuus HOM05D006965 ORTHO05D008652 2.1e-85 320.1 345 50.7
unitig_26.g9594 Utricularia gibba HOM05D001227 ORTHO05D001082 5.2e-84 315.5 348 51.1
ATR0605G047 Amborella trichopoda HOM05D006965 ORTHO05D008652 3.7e-82 309.3 345 48.1
FAN03G0167 Fragaria x ananassa HOM05D006965 ORTHO05D008652 2.7e-80 303.1 253 59.3
EL10Ac2g04673 Beta vulgaris HOM05D006965 ORTHO05D008652 1.5e-78 297.4 313 51.8
Ah.16g102760 Amaranthus hybridus HOM05D006965 ORTHO05D008652 3.4e-75 286.2 344 45.9
Lsat_1_v5_gn_1_110081 Lactuca sativa HOM05D006965 ORTHO05D008652 4.9e-74 282.3 308 52.9
COL.COLO4_23913 Corchorus olitorius HOM05D006280 ORTHO05D008652 8.3e-74 281.6 241 57.3
Duzib114G0529 Durio zibethinus HOM05D006965 ORTHO05D008652 1.1e-73 281.2 350 44.9
CDE05G0249 Ceratophyllum demersum HOM05D006965 ORTHO05D008652 1.3e-71 274.2 262 51.9
Peaxi162Scf00878g00321 Petunia axillaris HOM05D006965 ORTHO05D008652 2.5e-70 270.0 262 53.8
HPP92_002651 Vanilla planifolia HOM05D006965 ORTHO05D008652 4.2e-65 252.7 240 52.1
arahy.Tifrunner.gnm1.ann1.Z1UMC7 Arachis hypogaea HOM05D006965 ORTHO05D008652 1.2e-64 251.1 215 56.7
Cfa022003 Carpinus fangiana HOM05D006965 ORTHO05D008652 1.3e-63 247.7 209 58.4
arahy.Tifrunner.gnm1.ann1.ZJD8NP Arachis hypogaea HOM05D006965 ORTHO05D008652 4.0e-60 236.1 243 49.4
Mapoly0087s0073 Marchantia polymorpha HOM05D006965 ORTHO05D008652 4.0e-60 236.1 356 39.0
DCAR_029603 Daucus carota HOM05D006965 ORTHO05D008652 4.2e-57 226.1 313 45.4
CARHR139580 Cardamine hirsuta HOM05D006965 ORTHO05D008652 6.0e-56 222.2 188 53.2
Eucgr.L03457 Eucalyptus grandis HOM05D006965 ORTHO05D008652 1.9e-38 164.1 131 55.0
SMO132G0001 Selaginella moellendorffii HOM05D006965 ORTHO05D008652 1.8e-36 157.5 280 37.1
SEGI_12556 Sequoiadendron giganteum HOM05D006965 ORTHO05D008652 5.8e-35 152.5 127 59.1
Haze_10414 Corylus avellana HOM05D006965 ORTHO05D008652 1.1e-28 131.7 101 63.4
SMO147G0191 Selaginella moellendorffii HOM05D020017 ORTHO05D022314 2.9e-26 123.6 175 38.3
Oeu009369.1 Olea europaea HOM05D006965 ORTHO05D008652 2.7e-24 117.1 146 44.5
Cpa.g.sc189.20 Carica papaya HOM05D006965 ORTHO05D008652 1.9e-17 94.4 66 60.6
TPR.G14363 Trifolium pratense HOM05D006965 ORTHO05D008652 5.3e-12 76.3 69 55.1
Cpa.g.sc189.19 Carica papaya HOM05D006965 ORTHO05D008652 4.0e-07 60.1 81 46.9


User provided reference genes

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