Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0016916 Sechium edule HOM05D004642 ORTHO05D005466 5.9e-279 964.1 733 100.0
CsaV3_7G033140 Cucumis sativus L. HOM05D004642 ORTHO05D005466 8.3e-148 528.5 736 59.9
ClCG09G002170 Citrullus lanatus HOM05D004642 ORTHO05D005466 1.0e-142 511.5 736 61.7
MELO3C024228.2 Cucumis melo HOM05D004642 ORTHO05D005466 2.4e-131 473.8 736 55.8
Prupe.3G071700 Prunus persica HOM05D004642 ORTHO05D005466 1.5e-104 384.8 714 45.2
Sed0016127 Sechium edule HOM05D004642 ORTHO05D005466 1.2e-98 365.2 630 48.7
QL05p024308 Quercus lobata HOM05D004642 ORTHO05D005466 1.5e-96 358.2 728 48.1
MD17G1195700 Malus domestica HOM05D004642 ORTHO05D005466 8.7e-89 332.4 724 44.8
Cfa002061 Carpinus fangiana HOM05D004642 ORTHO05D005466 1.9e-88 331.3 725 49.5
Duzib235G0715 Durio zibethinus HOM05D004642 ORTHO05D005466 1.8e-86 324.7 765 51.4
Potri.001G179600 Populus trichocarpa HOM05D004642 ORTHO05D005466 1.1e-83 315.5 709 43.4
MD09G1213800 Malus domestica HOM05D004642 ORTHO05D005466 5.7e-80 303.1 699 52.5
Haze_16437 Corylus avellana HOM05D004642 ORTHO05D005466 1.2e-77 295.4 623 47.2
vmacro18915 Vaccinium macrocarpon HOM05D004642 ORTHO05D005466 1.5e-77 295.0 686 37.6
Actinidia08974 Actinidia chinensis HOM05D004642 ORTHO05D005466 2.3e-73 281.2 725 46.6
CiPaw.02G151400 Carya illinoinensis HOM05D004642 ORTHO05D005466 2.3e-73 281.2 709 49.5
Sabra01G0147200 Salix brachista HOM05D004642 ORTHO05D005466 1.1e-72 278.9 814 46.8
Thecc.06G086400 Theobroma cacao HOM05D004642 ORTHO05D005466 4.5e-69 266.9 776 43.6
Nitab4.5_0005851g0030 Nicotiana tabacum HOM05D004642 ORTHO05D005466 8.5e-68 262.7 726 37.2
Cc04_g03480 Coffea canephora HOM05D004642 ORTHO05D005466 2.1e-66 258.1 656 36.9
Gorai.009G133100 Gossypium raimondii HOM05D004642 ORTHO05D005466 5.1e-65 253.4 538 41.6
Nitab4.5_0000671g0060 Nicotiana tabacum HOM05D004642 ORTHO05D005466 8.2e-63 246.1 689 36.7
CiPaw.01G239700 Carya illinoinensis HOM05D004642 ORTHO05D005466 1.4e-62 245.4 726 43.8
Actinidia24760 Actinidia chinensis HOM05D004642 ORTHO05D005466 2.4e-62 244.6 528 44.1
Gohir.A05G129515 Gossypium hirsutum HOM05D004642 ORTHO05D005466 5.3e-62 243.4 534 41.4
Gohir.D05G129000 Gossypium hirsutum HOM05D004642 ORTHO05D005466 5.3e-62 243.4 538 41.3
Dinv30514 Davidia involucrata HOM05D004642 ORTHO05D005466 9.1e-62 242.7 620 50.3
AUR62016441 Chenopodium quinoa HOM05D004642 ORTHO05D005466 1.1e-59 235.7 712 38.5
AUR62011627 Chenopodium quinoa HOM05D004642 ORTHO05D005466 1.6e-58 231.9 712 41.6
Duzib192G0922 Durio zibethinus HOM05D004642 ORTHO05D005466 1.0e-57 229.2 546 47.4
GSVIVG01017115001 Vitis vinifera HOM05D004642 ORTHO05D005466 1.5e-56 225.3 531 45.6
Sopen03g039110 Solanum pennellii HOM05D004642 ORTHO05D005466 6.3e-55 219.9 719 42.1
FAN14G2337 Fragaria x ananassa HOM05D004642 ORTHO05D005466 8.2e-55 219.5 729 48.8
PSO782G0786 Papaver somniferum HOM05D004642 ORTHO05D005466 1.1e-54 219.2 665 33.8
FvH4_6g31081 Fragaria vesca HOM05D004642 ORTHO05D005466 1.4e-54 218.8 729 48.6
Gohir.A09G083200 Gossypium hirsutum HOM05D004642 ORTHO05D005466 1.8e-54 218.4 566 33.0
PGSC0003DMG400002564 Solanum tuberosum HOM05D004642 ORTHO05D005466 3.1e-54 217.6 677 41.9
Lalb_Chr14g0373421 Lupinus albus HOM05D004642 ORTHO05D005466 4.1e-54 217.2 660 36.5
Rhsim12G0197600 Rhododendron simsii HOM05D004642 ORTHO05D005466 9.1e-54 216.1 670 49.7
Solyc03g120230.3 Solanum lycopersicum HOM05D004642 ORTHO05D005466 1.2e-53 215.7 714 43.0
CSS0030593 Camellia sinensis var. sinensis HOM05D004642 ORTHO05D005466 1.6e-53 215.3 564 47.3
Gohir.D09G083200 Gossypium hirsutum HOM05D004642 ORTHO05D005466 2.0e-53 214.9 561 32.1
Rhsim08G0221000 Rhododendron simsii HOM05D004642 ORTHO05D005466 3.5e-53 214.2 698 36.2
Manes.11G047800 Manihot esculenta HOM05D004642 ORTHO05D005466 2.9e-52 211.1 735 44.8
Gorai.006G098800 Gossypium raimondii HOM05D004642 ORTHO05D005466 3.8e-52 210.7 565 31.0
PGR102G3321 Punica granatum HOM05D004642 ORTHO05D005466 1.1e-51 209.1 508 41.5
Glyma.12G087100 Glycine max HOM05D004642 ORTHO05D005466 1.9e-51 208.4 691 36.9
Ah.01g021290 Amaranthus hybridus HOM05D004642 ORTHO05D005466 2.5e-51 208.0 748 39.7
Peaxi162Scf00015g00335 Petunia axillaris HOM05D004642 ORTHO05D005466 3.2e-51 207.6 697 47.5
Nn8g39228 Nelumbo nucifera HOM05D004642 ORTHO05D005466 5.5e-51 206.8 732 43.9
Ciclev10025273m.g Citrus clementina HOM05D004642 ORTHO05D005466 7.2e-51 206.5 571 46.1
RcHm_v2.0_Chr2g0137781 Rosa chinensis HOM05D004642 ORTHO05D005466 7.2e-51 206.5 723 47.3
Hund00614 Selenicereus undatus HOM05D004642 ORTHO05D005466 1.6e-50 205.3 634 46.5
Glyma.11G187500 Glycine max HOM05D004642 ORTHO05D005466 2.7e-50 204.5 730 41.9
TAR626G0806 Trochodendron aralioides HOM05D004642 ORTHO05D005466 1.4e-49 202.2 706 36.7
Lalb_Chr04g0262651 Lupinus albus HOM05D004642 ORTHO05D005466 3.3e-48 197.6 516 39.3
COL.COLO4_30362 Corchorus olitorius HOM05D004642 ORTHO05D005466 1.3e-47 195.7 583 45.6
SalBow2G0306 Salvia bowleyana HOM05D004642 ORTHO05D005466 4.1e-46 190.7 467 37.0
Lj3g0008789 Lotus japonicus HOM05D004642 ORTHO05D005466 7.0e-46 189.9 736 37.2
vmacro16950 Vaccinium macrocarpon HOM05D004642 ORTHO05D005466 3.5e-45 187.6 742 44.9
arahy.Tifrunner.gnm1.ann1.CA04QB Arachis hypogaea HOM05D004642 ORTHO05D005466 7.7e-45 186.4 489 47.2
arahy.Tifrunner.gnm1.ann1.Z6VQ0W Arachis hypogaea HOM05D004642 ORTHO05D005466 7.7e-45 186.4 489 47.2
Lsat_1_v5_gn_4_103580 Lactuca sativa HOM05D004642 ORTHO05D005466 2.9e-44 184.5 740 38.6
Nn2g11790 Nelumbo nucifera HOM05D004642 ORTHO05D005466 5.0e-44 183.7 732 39.2
Aa31LG8G3170 Aethionema arabicum HOM05D004642 ORTHO05D005466 6.5e-44 183.3 525 32.4
Phvul.011G092000 Phaseolus vulgaris HOM05D004642 ORTHO05D005466 1.5e-43 182.2 526 45.6
Atru.chr1.3266 Acer truncatum HOM05D004642 ORTHO05D005466 3.2e-43 181.0 733 41.7
Hund06610 Selenicereus undatus HOM05D004642 ORTHO05D005466 3.2e-43 181.0 742 38.0
Thhalv10020153m.g Eutrema salsugineum HOM05D004642 ORTHO05D005466 2.3e-41 174.9 667 31.3
Lalb_Chr01g0012651 Lupinus albus HOM05D004642 ORTHO05D005466 2.3e-41 174.9 445 41.8
Eucgr.F03012 Eucalyptus grandis HOM05D004642 ORTHO05D005466 2.8e-39 167.9 369 50.4
Aqoxy7G01787 Aquilegia oxysepala HOM05D004642 ORTHO05D005466 3.7e-39 167.5 730 38.4
BraA03t13110Z Brassica rapa HOM05D004642 ORTHO05D005466 3.7e-39 167.5 531 36.5
PSO063G4770 Papaver somniferum HOM05D004642 ORTHO05D005466 1.8e-38 165.2 665 37.0
FAN09G1651 Fragaria x ananassa HOM05D004642 ORTHO05D005466 5.4e-38 163.7 729 42.5
Psat7g189080 Pisum sativum HOM05D004642 ORTHO05D005466 7.0e-38 163.3 473 44.0
CANSAT56G1090 Cannabis sativa HOM05D004642 ORTHO05D005466 9.1e-38 162.9 534 46.3
TWI75G1656 Tripterygium wilfordii HOM05D004642 ORTHO05D005466 1.2e-37 162.5 501 37.9
CARHR091130 Cardamine hirsuta HOM05D004642 ORTHO05D005466 1.6e-37 162.2 526 28.3
BcaC09g48580 Brassica carinata HOM05D004642 ORTHO05D005466 1.7e-36 158.7 707 27.4
AL3G28650 Arabidopsis lyrata HOM05D004642 ORTHO05D005466 5.0e-36 157.1 528 43.4
THA.LOC104817998 Tarenaya hassleriana HOM05D004642 ORTHO05D005466 8.6e-36 156.4 520 42.7
Oeu033484.1 Olea europaea HOM05D004642 ORTHO05D005466 1.5e-35 155.6 490 31.4
VMungo1127G1134 Vigna mungo HOM05D004642 ORTHO05D005466 5.5e-35 153.7 522 35.8
Ca_19383_v3 Cicer arietinum L. HOM05D004642 ORTHO05D005466 1.6e-34 152.1 700 39.1
A03p39630 Brassica napus HOM05D004642 ORTHO05D005466 2.1e-34 151.8 530 36.0
arahy.Tifrunner.gnm1.ann1.D5EQ93 Arachis hypogaea HOM05D004642 ORTHO05D005466 1.0e-33 149.4 437 45.5
Sp3g14350 Schrenkiella parvula HOM05D004642 ORTHO05D005466 1.4e-33 149.1 531 41.6
SalBow2G2616 Salvia bowleyana HOM05D004642 ORTHO05D005466 1.8e-33 148.7 522 42.1
Carub.0003s1573 Capsella rubella HOM05D004642 ORTHO05D005466 2.3e-33 148.3 533 42.8
AT3G16000 Arabidopsis thaliana HOM05D004642 ORTHO05D005466 2.6e-32 144.8 533 43.2
Zm00001eb283760 Zea mays HOM05D004642 ORTHO05D005466 2.6e-32 144.8 648 34.6
arahy.Tifrunner.gnm1.ann1.I53961 Arachis hypogaea HOM05D004642 ORTHO05D005466 4.4e-32 144.1 489 42.1
TPR.G15588 Trifolium pratense HOM05D004642 ORTHO05D005466 7.5e-32 143.3 637 40.5
BolC5t33791H Brassica oleracea HOM05D004642 ORTHO05D005466 9.8e-32 142.9 533 42.6
Hma1.2p1_0323F.1_g125210 Hydrangea macrophylla HOM05D004642 ORTHO05D005466 9.8e-32 142.9 724 31.9
unitig_578.g16688 Utricularia gibba HOM05D004642 ORTHO05D005466 9.8e-32 142.9 702 31.5
FAN05G5776 Fragaria x ananassa HOM05D004642 ORTHO05D005466 1.1e-30 139.4 727 44.2
A05p33450 Brassica napus HOM05D004642 ORTHO05D005466 3.1e-30 137.9 529 36.9
SGA_v2.0_scaffold4G01996 Striga asiatica HOM05D004642 ORTHO05D005466 1.2e-29 136.0 689 26.0
SGA_v2.0_scaffold37G14818 Striga asiatica HOM05D004642 ORTHO05D005466 5.9e-29 133.7 714 43.8
BcaB06g25698 Brassica carinata HOM05D004642 ORTHO05D005466 1.3e-28 132.5 529 34.6
CAN.G438.64 Capsicum annuum HOM05D004642 ORTHO05D005466 1.3e-28 132.5 736 41.0
BraA05t22169Z Brassica rapa HOM05D004642 ORTHO05D005466 2.9e-28 131.3 526 41.4
BcaC01g03843 Brassica carinata HOM05D004642 ORTHO05D005466 2.5e-27 128.3 462 36.6
C03p48030 Brassica napus HOM05D004642 ORTHO05D005466 2.5e-27 128.3 462 36.6
BolC3t17082H Brassica oleracea HOM05D004642 ORTHO05D005466 2.5e-27 128.3 462 36.6
FAN02G1410 Fragaria x ananassa HOM05D004642 ORTHO05D005466 3.3e-27 127.9 193 39.9
ECA248G0988 Erigeron canadensis HOM05D004642 ORTHO05D005466 4.3e-27 127.5 434 39.9
Lj5A61G44 Lonicera japonica HOM05D004642 ORTHO05D005466 1.8e-25 122.1 670 33.9
Medtr4g054960 Medicago truncatula HOM05D004642 ORTHO05D005466 3.1e-25 121.3 378 37.3
BcaB04g18872 Brassica carinata HOM05D004642 ORTHO05D005466 4.0e-25 120.9 539 32.1
TAR636G0382 Trochodendron aralioides HOM05D004642 ORTHO05D005466 4.0e-25 120.9 234 36.3
BcaB04g20887 Brassica carinata HOM05D004642 ORTHO05D005466 5.2e-25 120.6 689 27.6
MSTRG.9454 Avicennia marina HOM05D004642 ORTHO05D005466 8.9e-25 119.8 524 45.0
MD09G1213500 Malus domestica HOM05D004642 ORTHO05D005466 8.9e-25 119.8 324 43.2
Glyma.11G237600 Glycine max HOM05D004642 ORTHO05D005466 4.4e-24 117.5 354 46.0
SEGI_16798 Sequoiadendron giganteum HOM05D004642 ORTHO05D005466 2.9e-23 114.8 690 32.0
Migut.D01034 Erythranthe guttata HOM05D004642 ORTHO05D005466 3.7e-23 114.4 646 32.5
CDE07G1358 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 1.4e-22 112.5 578 27.2
HanXRQChr09g0275271 Helianthus annuus HOM05D004642 ORTHO05D005466 2.7e-21 108.2 493 43.6
C05p50450 Brassica napus HOM05D004642 ORTHO05D005466 6.0e-21 107.1 505 41.6
HanXRQChr16g0500971 Helianthus annuus HOM05D004642 ORTHO05D005466 7.8e-21 106.7 746 34.2
A01p38100 Brassica napus HOM05D015723 ORTHO05D003275 1.3e-20 105.9 379 25.6
EL10Ac9g21996 Beta vulgaris HOM05D004642 ORTHO05D005466 2.3e-20 105.1 485 39.2
Hma1.2p1_0323F.1_g125200 Hydrangea macrophylla HOM05D004642 ORTHO05D005466 2.3e-20 105.1 154 39.6
ATR0037G055 Amborella trichopoda HOM05D004642 ORTHO05D005466 1.1e-19 102.8 676 37.1
MD09G1213300 Malus domestica HOM05D004642 ORTHO05D005466 1.1e-19 102.8 111 53.2
TAR624G1258 Trochodendron aralioides HOM05D004642 ORTHO05D005466 7.3e-19 100.1 303 40.6
Dinv38051 Davidia involucrata HOM05D004642 ORTHO05D005466 8.0e-18 96.7 333 27.3
CDE07G0399 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 1.4e-17 95.9 593 20.2
unitig_744.g24335 Utricularia gibba HOM05D004642 ORTHO05D005466 1.5e-16 92.4 690 27.1
C01p48370 Brassica napus HOM05D004642 ORTHO05D005466 2.0e-16 92.0 500 23.2
HPP92_020045 Vanilla planifolia HOM05D004642 ORTHO05D005466 2.0e-16 92.0 700 25.4
Sc21g0005100 Simmondsia chinensis HOM05D004642 ORTHO05D005466 4.4e-16 90.9 734 34.9
A03p54580 Brassica napus HOM05D004642 ORTHO05D005466 2.4e-14 85.1 355 36.1
BraA03t14525Z Brassica rapa HOM05D004642 ORTHO05D005466 2.4e-14 85.1 355 36.1
CDE06G0246 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 1.2e-13 82.8 414 20.0
AL776U10010 Arabidopsis lyrata HOM05D004642 ORTHO05D005466 3.5e-13 81.3 98 51.0
MD09G1212900 Malus domestica HOM05D004642 ORTHO05D005466 4.3e-11 74.3 118 39.8
Cpa.g.sc1188.1 Carica papaya HOM05D004642 ORTHO05D005466 1.8e-09 68.9 305 45.9
BolC1t04795H Brassica oleracea HOM05D004642 ORTHO05D005466 1.5e-08 65.9 238 28.2
BraA01t03868Z Brassica rapa HOM05D004642 ORTHO05D005466 1.5e-08 65.9 212 27.4


User provided reference genes

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