Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0016907 Sechium edule HOM05D005476 ORTHO05D006886 9.4e-206 719.9 356 100.0
ClCG03G000760 Citrullus lanatus HOM05D005476 ORTHO05D006886 3.1e-180 635.2 356 87.4
MELO3C020550.2 Cucumis melo HOM05D005476 ORTHO05D006886 2.1e-173 612.5 352 84.9
Sed0014418 Sechium edule HOM05D005476 ORTHO05D006886 4.1e-169 598.2 356 82.9
CsaV3_1G036180 Cucumis sativus L. HOM05D005476 ORTHO05D006886 4.9e-138 495.0 288 83.7
Prupe.6G057500 Prunus persica HOM05D005476 ORTHO05D006886 1.1e-118 430.6 347 62.2
CiPaw.13G077600 Carya illinoinensis HOM05D005476 ORTHO05D006886 1.5e-118 430.3 353 61.5
Dinv14437 Davidia involucrata HOM05D005476 ORTHO05D006886 1.3e-117 427.2 368 61.1
CiPaw.14G059600 Carya illinoinensis HOM05D005476 ORTHO05D006886 1.6e-117 426.8 360 60.6
TWI31G0160 Tripterygium wilfordii HOM05D005476 ORTHO05D006886 1.6e-117 426.8 344 63.7
Haze_24322 Corylus avellana HOM05D005476 ORTHO05D006886 2.8e-117 426.0 358 61.2
Cpa.g.sc415.4 Carica papaya HOM05D005476 ORTHO05D006886 3.7e-117 425.6 356 61.2
Cfa011695 Carpinus fangiana HOM05D005476 ORTHO05D006886 2.4e-116 422.9 368 59.8
Potri.009G046200 Populus trichocarpa HOM05D005476 ORTHO05D006886 3.4e-115 419.1 345 61.7
MD11G1074700 Malus domestica HOM05D005476 ORTHO05D006886 7.7e-115 417.9 345 61.4
Dinv28640 Davidia involucrata HOM05D005476 ORTHO05D006886 3.8e-114 415.6 352 62.2
RcHm_v2.0_Chr5g0069451 Rosa chinensis HOM05D005476 ORTHO05D006886 3.8e-114 415.6 344 62.2
Thecc.09G301800 Theobroma cacao HOM05D005476 ORTHO05D006886 3.8e-114 415.6 367 59.1
TWI79G0899 Tripterygium wilfordii HOM05D005476 ORTHO05D006886 3.8e-114 415.6 357 61.1
Ciclev10028681m.g Citrus clementina HOM05D005476 ORTHO05D006886 3.2e-113 412.5 350 60.3
CSS0011477 Camellia sinensis var. sinensis HOM05D005476 ORTHO05D006886 4.2e-113 412.1 353 60.1
CSS0028478 Camellia sinensis var. sinensis HOM05D005476 ORTHO05D006886 5.5e-113 411.8 353 59.8
Eucgr.B02253 Eucalyptus grandis HOM05D005476 ORTHO05D006886 9.4e-113 411.0 345 59.1
COL.COLO4_19157 Corchorus olitorius HOM05D005476 ORTHO05D006886 1.2e-112 410.6 367 57.5
FvH4_3g38550 Fragaria vesca HOM05D005476 ORTHO05D006886 1.6e-112 410.2 343 60.9
MD03G1070700 Malus domestica HOM05D005476 ORTHO05D006886 1.6e-112 410.2 345 60.0
FAN16G3667 Fragaria x ananassa HOM05D005476 ORTHO05D006886 2.1e-112 409.8 343 60.6
Atru.chr3.4220 Acer truncatum HOM05D005476 ORTHO05D006886 3.6e-112 409.1 368 58.2
Duzib170G1024 Durio zibethinus HOM05D005476 ORTHO05D006886 4.6e-112 408.7 367 58.0
QL01p038276 Quercus lobata HOM05D005476 ORTHO05D006886 4.6e-112 408.7 340 61.8
Duzib168G1303 Durio zibethinus HOM05D005476 ORTHO05D006886 6.1e-112 408.3 355 59.4
TAR633G0563 Trochodendron aralioides HOM05D005476 ORTHO05D006886 6.1e-112 408.3 365 57.3
CANSAT25G3760 Cannabis sativa HOM05D005476 ORTHO05D006886 7.9e-112 407.9 336 61.3
FAN11G1091 Fragaria x ananassa HOM05D005476 ORTHO05D006886 7.9e-112 407.9 343 60.6
FAN21G0574 Fragaria x ananassa HOM05D005476 ORTHO05D006886 7.9e-112 407.9 343 60.6
Gorai.006G106700 Gossypium raimondii HOM05D005476 ORTHO05D006886 1.0e-111 407.5 356 59.6
TAR636G1181 Trochodendron aralioides HOM05D005476 ORTHO05D006886 1.0e-111 407.5 369 57.5
Nn2g13708 Nelumbo nucifera HOM05D005476 ORTHO05D006886 3.9e-111 405.6 343 59.5
Nitab4.5_0001806g0030 Nicotiana tabacum HOM05D005476 ORTHO05D006886 5.1e-111 405.2 364 56.9
Sabra09G0033300 Salix brachista HOM05D005476 ORTHO05D006886 4.3e-110 402.1 351 59.8
Manes.02G119400 Manihot esculenta HOM05D005476 ORTHO05D006886 5.7e-110 401.7 354 57.6
Potri.001G251500 Populus trichocarpa HOM05D005476 ORTHO05D006886 1.7e-109 400.2 345 60.3
Solyc06g076950.3 Solanum lycopersicum HOM05D005476 ORTHO05D006886 2.8e-109 399.4 363 56.7
PGSC0003DMG400030356 Solanum tuberosum HOM05D005476 ORTHO05D006886 2.8e-109 399.4 363 57.3
Sopen06g033350 Solanum pennellii HOM05D005476 ORTHO05D006886 8.2e-109 397.9 363 56.7
Nitab4.5_0000010g0290 Nicotiana tabacum HOM05D005476 ORTHO05D006886 4.1e-108 395.6 364 55.8
AT5G58730 Arabidopsis thaliana HOM05D005476 ORTHO05D006886 6.9e-108 394.8 320 62.2
DCAR_007375 Daucus carota HOM05D005476 ORTHO05D006886 1.2e-107 394.0 366 55.2
THA.LOC104810712 Tarenaya hassleriana HOM05D005476 ORTHO05D006886 1.2e-107 394.0 334 59.9
AL8G35010 Arabidopsis lyrata HOM05D005476 ORTHO05D006886 1.5e-107 393.7 320 61.6
Aa31LG11G490 Aethionema arabicum HOM05D005476 ORTHO05D006886 4.5e-107 392.1 323 60.7
Aqoxy2G00901 Aquilegia oxysepala HOM05D005476 ORTHO05D006886 4.5e-107 392.1 314 62.4
Manes.01G161600 Manihot esculenta HOM05D005476 ORTHO05D006886 5.9e-107 391.7 347 57.3
CAN.G394.127 Capsicum annuum HOM05D005476 ORTHO05D006886 1.0e-106 391.0 364 56.3
FAN25G3001 Fragaria x ananassa HOM05D005476 ORTHO05D006886 1.3e-106 390.6 369 56.1
Peaxi162Scf00540g00426 Petunia axillaris HOM05D005476 ORTHO05D006886 1.3e-106 390.6 365 54.8
GSVIVG01024740001 Vitis vinifera HOM05D005476 ORTHO05D006886 6.5e-106 388.3 362 57.2
Carub.0008s1935 Capsella rubella HOM05D005476 ORTHO05D006886 1.1e-105 387.5 339 59.6
Sp6g20420 Schrenkiella parvula HOM05D005476 ORTHO05D006886 3.2e-105 386.0 318 61.6
Thhalv10014005m.g Eutrema salsugineum HOM05D005476 ORTHO05D006886 5.5e-105 385.2 328 61.0
CARHR272640 Cardamine hirsuta HOM05D005476 ORTHO05D006886 9.4e-105 384.4 318 61.3
SalBow2G2575 Salvia bowleyana HOM05D005476 ORTHO05D006886 2.7e-104 382.9 356 56.7
Hund18848 Selenicereus undatus HOM05D005476 ORTHO05D006886 3.6e-104 382.5 357 58.8
C09p50810 Brassica napus HOM05D005476 ORTHO05D006886 2.0e-102 376.7 323 59.4
Glyma.14G193500 Glycine max HOM05D005476 ORTHO05D006886 2.0e-102 376.7 366 53.0
BraA10t43679Z Brassica rapa HOM05D005476 ORTHO05D006886 3.3e-102 375.9 324 60.2
A10p15540 Brassica napus HOM05D005476 ORTHO05D006886 5.7e-102 375.2 329 59.0
PSO801G0319 Papaver somniferum HOM05D005476 ORTHO05D006886 9.7e-102 374.4 360 54.2
Glyma.02G226600 Glycine max HOM05D005476 ORTHO05D006886 1.3e-101 374.0 362 53.6
SGA_v2.0_scaffold146G36140 Striga asiatica HOM05D005476 ORTHO05D006886 1.3e-101 374.0 342 56.1
Cc01_g14180 Coffea canephora HOM05D005476 ORTHO05D006886 4.8e-101 372.1 333 56.8
Lsat_1_v5_gn_9_20101 Lactuca sativa HOM05D005476 ORTHO05D006886 4.8e-101 372.1 324 59.3
AUR62020130 Chenopodium quinoa HOM05D005476 ORTHO05D006886 6.3e-101 371.7 343 57.1
Ah.08g221180 Amaranthus hybridus HOM05D005476 ORTHO05D006886 1.1e-100 370.9 340 57.4
AUR62001646 Chenopodium quinoa HOM05D005476 ORTHO05D006886 1.1e-100 370.9 354 55.9
BolC9t57941H Brassica oleracea HOM05D005476 ORTHO05D006886 2.4e-100 369.8 323 58.8
PSO339G1712 Papaver somniferum HOM05D005476 ORTHO05D006886 2.4e-100 369.8 361 56.0
Nn2g11493 Nelumbo nucifera HOM05D005476 ORTHO05D006886 2.6e-99 366.3 285 63.5
PGR102G2402 Punica granatum HOM05D005476 ORTHO05D006886 2.6e-99 366.3 302 63.2
Migut.N00789 Erythranthe guttata HOM05D005476 ORTHO05D006886 1.0e-98 364.4 357 53.8
EL10Ac7g16167 Beta vulgaris HOM05D005476 ORTHO05D006886 1.3e-98 364.0 326 57.7
Lalb_Chr17g0345081 Lupinus albus HOM05D005476 ORTHO05D006886 2.2e-98 363.2 353 54.4
BcaC04g19834 Brassica carinata HOM05D005476 ORTHO05D006886 2.9e-98 362.8 323 58.5
SGA_v2.0_scaffold120G32912 Striga asiatica HOM05D005476 ORTHO05D006886 2.9e-98 362.8 345 53.0
Medtr5g070350 Medicago truncatula HOM05D005476 ORTHO05D006886 5.0e-98 362.1 366 53.0
TPR.G5779 Trifolium pratense HOM05D005476 ORTHO05D006886 5.0e-98 362.1 362 51.1
SalBow5G1841 Salvia bowleyana HOM05D005476 ORTHO05D006886 8.5e-98 361.3 330 57.3
vmacro02961 Vaccinium macrocarpon HOM05D005476 ORTHO05D006886 1.5e-97 360.5 428 47.7
Gohir.A09G090300 Gossypium hirsutum HOM05D005476 ORTHO05D006886 1.9e-97 360.1 281 64.4
Psat2g058600 Pisum sativum HOM05D005476 ORTHO05D006886 1.9e-97 360.1 366 52.2
HanXRQChr04g0109161 Helianthus annuus HOM05D005476 ORTHO05D006886 3.2e-97 359.4 319 58.3
arahy.Tifrunner.gnm1.ann1.Q06W8H Arachis hypogaea HOM05D005476 ORTHO05D006886 7.2e-97 358.2 376 52.1
MBI14_g42907_MAGBIO Magnolia biondii HOM05D005476 ORTHO05D006886 7.2e-97 358.2 316 55.7
Phvul.008G261400 Phaseolus vulgaris HOM05D005476 ORTHO05D006886 9.4e-97 357.8 357 53.2
Gohir.D09G090400 Gossypium hirsutum HOM05D005476 ORTHO05D006886 1.2e-96 357.5 281 64.1
Ca_05598_v3 Cicer arietinum L. HOM05D005476 ORTHO05D006886 3.6e-96 355.9 367 53.4
LjContig00155g0002690 Lotus japonicus HOM05D005476 ORTHO05D006886 4.7e-96 355.5 341 53.4
Sc06g0008450 Simmondsia chinensis HOM05D005476 ORTHO05D006886 1.4e-95 354.0 357 54.9
HPP92_002247 Vanilla planifolia HOM05D005476 ORTHO05D006886 5.2e-95 352.1 312 55.8
unitig_8.g3687 Utricularia gibba HOM05D005476 ORTHO05D006886 6.7e-95 351.7 316 55.4
ECA247G2000 Erigeron canadensis HOM05D005476 ORTHO05D006886 1.4e-92 344.0 330 54.8
CDE04G1962 Ceratophyllum demersum HOM05D005476 ORTHO05D006886 1.2e-91 340.9 337 51.0
unitig_22.g5210 Utricularia gibba HOM05D005476 ORTHO05D006886 4.5e-91 339.0 335 52.5
SHI19142 Sapria himalayana HOM05D005476 ORTHO05D006886 7.7e-91 338.2 324 54.6
Rhsim13G0069500 Rhododendron simsii HOM05D005476 ORTHO05D006886 2.2e-90 336.7 371 49.9
VMungo0647G0678 Vigna mungo HOM05D005476 ORTHO05D006886 7.2e-89 331.6 282 58.2
SalBow8G4850 Salvia bowleyana HOM05D005476 ORTHO05D006886 1.5e-86 323.9 330 52.7
ATR0618G050 Amborella trichopoda HOM05D005476 ORTHO05D006886 6.1e-80 302.0 332 47.9
Os03g0737701 Oryza sativa ssp. japonica HOM05D005476 ORTHO05D006886 8.0e-80 301.6 324 49.4
Oeu013433.3 Olea europaea HOM05D005476 ORTHO05D006886 1.8e-79 300.4 272 55.9
Zm00001eb056490 Zea mays HOM05D005476 ORTHO05D006886 3.4e-78 296.2 287 51.6
Lj1A137G45 Lonicera japonica HOM05D005476 ORTHO05D006886 3.1e-76 289.7 331 50.8
CDE02G0680 Ceratophyllum demersum HOM05D005476 ORTHO05D006886 2.3e-74 283.5 283 50.9
Mapoly0060s0007 Marchantia polymorpha HOM05D005476 ORTHO05D006886 3.0e-66 256.5 280 48.2
Oeu000377.2 Olea europaea HOM05D005476 ORTHO05D006886 5.0e-66 255.8 262 53.1
AL1010U10010 Arabidopsis lyrata HOM05D005476 ORTHO05D006886 6.6e-66 255.4 189 66.7
Pp3c1_3930 Physcomitrium patens HOM05D005476 ORTHO05D006886 1.8e-63 247.3 280 45.4
SEGI_26423 Sequoiadendron giganteum HOM05D005476 ORTHO05D006886 2.6e-62 243.4 289 46.0
Pp3c7_18020 Physcomitrium patens HOM05D005476 ORTHO05D006886 2.4e-60 236.9 279 43.7
AagrBONN_evm.TU.Sc2ySwM_362.363 Anthoceros agrestis HOM05D005476 ORTHO05D006886 5.4e-60 235.7 278 46.0
SMO329G0019 Selaginella moellendorffii HOM05D005476 ORTHO05D006886 2.3e-55 220.3 269 42.8
arahy.Tifrunner.gnm1.ann1.70CJD0 Arachis hypogaea HOM05D005476 ORTHO05D006886 4.9e-53 212.6 221 51.1
CBR_g23861 Chara braunii HOM05D005476 ORTHO05D006886 7.3e-49 198.7 272 40.8
Gohir.D05G089750 Gossypium hirsutum HOM05D005476 ORTHO05D006886 1.6e-43 181.0 164 56.7
A03p12050 Brassica napus HOM05D005476 ORTHO05D006886 1.1e-41 174.9 144 62.5
RcHm_v2.0_Chr6g0276161 Rosa chinensis HOM05D005476 ORTHO05D006886 1.1e-36 158.3 137 59.1
RcHm_v2.0_Chr7g0201761 Rosa chinensis HOM05D005476 ORTHO05D006886 9.3e-36 155.2 128 60.9
HanXRQChr16g0507541 Helianthus annuus HOM05D005476 ORTHO05D006886 2.9e-21 107.1 86 58.1
SalBow8G2493 Salvia bowleyana HOM05D005476 ORTHO05D006886 7.1e-20 102.4 175 38.3
BraA03t10517Z Brassica rapa HOM05D005476 ORTHO05D006886 1.6e-19 101.3 74 67.6
RcHm_v2.0_Chr7g0242751 Rosa chinensis HOM05D005476 ORTHO05D006886 6.0e-19 99.4 86 58.1
C03p15890 Brassica napus HOM05D000062 ORTHO05D021669 8.7e-18 95.5 125 47.2
BolC3t14020H Brassica oleracea HOM05D000062 ORTHO05D006886 8.7e-18 95.5 125 47.2
arahy.Tifrunner.gnm1.ann1.Y3WSKM Arachis hypogaea HOM05D005476 ORTHO05D006886 9.6e-17 92.0 99 51.5
Actinidia23243 Actinidia chinensis HOM05D005476 ORTHO05D006886 4.5e-14 83.2 62 64.5
Pp3c11_9540 Physcomitrium patens HOM05D005476 ORTHO05D006886 6.7e-10 69.3 97 42.3
SalBow5G5594 Salvia bowleyana HOM05D005476 ORTHO05D006886 4.3e-09 66.6 71 50.7
RcHm_v2.0_Chr6g0303391 Rosa chinensis HOM05D005476 ORTHO05D006886 1.3e-08 65.1 44 70.5


User provided reference genes

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