Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0016843 Sechium edule HOM05D003474 ORTHO05D003971 3.1e-110 401.7 196 100.0
ClCG01G018800 Citrullus lanatus HOM05D003474 ORTHO05D003971 1.2e-64 250.4 205 64.9
CsaV3_6G045460 Cucumis sativus L. HOM05D003474 ORTHO05D003971 4.6e-61 238.4 202 63.9
Thecc.01G102400 Theobroma cacao HOM05D003474 ORTHO05D003971 5.1e-52 208.4 200 58.5
QL06p049633 Quercus lobata HOM05D003474 ORTHO05D003971 6.2e-50 201.4 197 53.8
QL06p049618 Quercus lobata HOM05D003474 ORTHO05D003971 1.8e-49 199.9 197 53.3
COL.COLO4_09957 Corchorus olitorius HOM05D003474 ORTHO05D003971 2.4e-49 199.5 213 51.6
Prupe.6G186100 Prunus persica HOM05D003474 ORTHO05D003971 1.5e-48 196.8 195 54.4
QL06p049587 Quercus lobata HOM05D003474 ORTHO05D003971 7.6e-48 194.5 198 52.5
Potri.007G092300 Populus trichocarpa HOM05D003474 ORTHO05D003971 8.4e-47 191.0 192 51.6
Sabra07G0075900 Salix brachista HOM05D003474 ORTHO05D003971 8.4e-47 191.0 192 50.5
Sabra07G0076000 Salix brachista HOM05D003474 ORTHO05D003971 8.4e-47 191.0 192 50.5
Sabra07G0076200 Salix brachista HOM05D003474 ORTHO05D003971 8.4e-47 191.0 192 50.5
Sabra07G0076300 Salix brachista HOM05D003474 ORTHO05D003971 8.4e-47 191.0 192 50.5
Sabra07G0076100 Salix brachista HOM05D003474 ORTHO05D003971 1.1e-46 190.7 192 50.5
Ciclev10027277m.g Citrus clementina HOM05D003474 ORTHO05D003971 4.2e-46 188.7 204 52.5
Potri.005G076100 Populus trichocarpa HOM05D003474 ORTHO05D003971 1.6e-45 186.8 188 52.7
Cfa002670 Carpinus fangiana HOM05D003474 ORTHO05D003971 2.1e-45 186.4 200 52.5
RcHm_v2.0_Chr2g0114461 Rosa chinensis HOM05D003474 ORTHO05D003971 2.7e-45 186.0 198 54.5
CiPaw.04G099000 Carya illinoinensis HOM05D003474 ORTHO05D003971 6.0e-45 184.9 204 50.5
QL06p049593 Quercus lobata HOM05D003474 ORTHO05D003971 6.0e-45 184.9 198 51.0
Duzib187G1721 Durio zibethinus HOM05D003474 ORTHO05D003971 3.0e-44 182.6 198 52.0
RcHm_v2.0_Chr2g0114471 Rosa chinensis HOM05D003474 ORTHO05D003971 3.9e-44 182.2 201 52.7
Gorai.007G239100 Gossypium raimondii HOM05D003474 ORTHO05D003971 5.1e-44 181.8 192 51.6
Lj4P889T19 Lonicera japonica HOM05D003474 ORTHO05D003971 5.1e-44 181.8 197 47.2
Oeu002403.1 Olea europaea HOM05D003474 ORTHO05D003971 1.9e-43 179.9 193 49.2
Oeu056606.1 Olea europaea HOM05D003474 ORTHO05D003971 2.5e-43 179.5 198 50.5
FvH4_1g20980 Fragaria vesca HOM05D003474 ORTHO05D003971 9.6e-43 177.6 197 54.3
FAN19G2364 Fragaria x ananassa HOM05D003474 ORTHO05D003971 1.3e-42 177.2 197 53.8
CiPaw.03G141500 Carya illinoinensis HOM05D003474 ORTHO05D003971 1.6e-42 176.8 195 50.8
Gohir.A11G201900 Gossypium hirsutum HOM05D003474 ORTHO05D003971 1.6e-42 176.8 197 50.8
CSS0038157 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 2.1e-42 176.4 201 50.7
CSS0039995 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 2.8e-42 176.0 209 47.4
ClCG01G018790 Citrullus lanatus HOM05D003474 ORTHO05D003971 2.8e-42 176.0 212 50.5
FAN23G2065 Fragaria x ananassa HOM05D003474 ORTHO05D003971 3.6e-42 175.6 197 52.3
TAR381G0511 Trochodendron aralioides HOM05D003474 ORTHO05D003971 8.1e-42 174.5 202 48.0
Duzib147G1557 Durio zibethinus HOM05D003474 ORTHO05D003971 1.4e-41 173.7 195 53.3
FAN28G0803 Fragaria x ananassa HOM05D003474 ORTHO05D003971 1.4e-41 173.7 197 51.8
Gohir.D11G221900 Gossypium hirsutum HOM05D003474 ORTHO05D003971 2.4e-41 172.9 197 49.7
Hma1.2p1_0047F.1_g027910 Hydrangea macrophylla HOM05D003474 ORTHO05D003971 2.4e-41 172.9 198 48.0
TWI74G0170 Tripterygium wilfordii HOM05D003474 ORTHO05D003971 3.1e-41 172.6 209 51.2
Cc07_g15300 Coffea canephora HOM05D003474 ORTHO05D003971 4.0e-41 172.2 200 48.5
CSS0044421 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 5.3e-41 171.8 210 47.1
FAN26G3130 Fragaria x ananassa HOM05D003474 ORTHO05D003971 6.9e-41 171.4 197 52.3
Nn5g30135 Nelumbo nucifera HOM05D003474 ORTHO05D003971 1.5e-40 170.2 204 46.6
Haze_24940 Corylus avellana HOM05D003474 ORTHO05D003971 7.6e-40 167.9 160 58.1
CSS0002095 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 2.9e-39 166.0 210 44.8
CSS0009549 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 2.9e-39 166.0 210 46.2
Cfa002671 Carpinus fangiana HOM05D003474 ORTHO05D003971 6.4e-39 164.9 199 46.7
Manes.12G135500 Manihot esculenta HOM05D003474 ORTHO05D003971 8.4e-39 164.5 204 47.1
Nn1g05334 Nelumbo nucifera HOM05D003474 ORTHO05D003971 2.4e-38 162.9 192 45.8
CSS0003854 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 1.2e-37 160.6 209 44.0
Cpa.g.sc213.15 Carica papaya HOM05D003474 ORTHO05D003971 4.6e-37 158.7 192 46.4
TAR625G0209 Trochodendron aralioides HOM05D003474 ORTHO05D003971 3.9e-36 155.6 181 47.0
THA.LOC104804926 Tarenaya hassleriana HOM05D003474 ORTHO05D003971 1.1e-35 154.1 187 43.9
TAR625G1533 Trochodendron aralioides HOM05D003474 ORTHO05D003971 2.5e-35 152.9 196 45.4
CAN.G441.1 Capsicum annuum HOM05D003474 ORTHO05D003971 5.6e-35 151.8 197 44.2
PGSC0003DMG400001891 Solanum tuberosum HOM05D003474 ORTHO05D003971 1.3e-34 150.6 206 42.2
Dinv13182 Davidia involucrata HOM05D003474 ORTHO05D003971 1.6e-34 150.2 139 55.4
Nitab4.5_0000104g0120 Nicotiana tabacum HOM05D003474 ORTHO05D003971 2.1e-34 149.8 181 47.0
Aqoxy6G00810 Aquilegia oxysepala HOM05D003474 ORTHO05D003971 4.8e-34 148.7 198 43.4
Peaxi162Scf00611g00012 Petunia axillaris HOM05D003474 ORTHO05D003971 4.8e-34 148.7 205 41.5
Nitab4.5_0000104g0070 Nicotiana tabacum HOM05D003474 ORTHO05D003971 8.1e-34 147.9 186 47.3
Rhsim08G0010000 Rhododendron simsii HOM05D003474 ORTHO05D003971 3.1e-33 146.0 199 45.7
CARHR293740 Cardamine hirsuta HOM05D003474 ORTHO05D003971 9.0e-33 144.4 194 42.3
AUR62002014 Chenopodium quinoa HOM05D003474 ORTHO05D003971 1.2e-32 144.1 206 41.3
MELO3C007759.2 Cucumis melo HOM05D003474 ORTHO05D003971 1.2e-32 144.1 133 62.4
Aqoxy6G00809 Aquilegia oxysepala HOM05D003474 ORTHO05D003971 1.5e-32 143.7 180 43.9
Eucgr.I00429 Eucalyptus grandis HOM05D003474 ORTHO05D003971 4.5e-32 142.1 206 42.2
Eucgr.I00430 Eucalyptus grandis HOM05D003474 ORTHO05D003971 4.5e-32 142.1 206 42.2
Atru.chr4.70 Acer truncatum HOM05D003474 ORTHO05D003971 5.8e-32 141.7 234 42.7
AL8G42540 Arabidopsis lyrata HOM05D003474 ORTHO05D003971 7.6e-32 141.4 198 41.9
Nitab4.5_0016805g0010 Nicotiana tabacum HOM05D003474 ORTHO05D003971 7.6e-32 141.4 185 44.3
DCAR_003501 Daucus carota HOM05D003474 ORTHO05D003971 9.9e-32 141.0 199 40.7
Thhalv10005637m.g Eutrema salsugineum HOM05D003474 ORTHO05D003971 9.9e-32 141.0 196 42.9
MBI02_g08731_MAGBIO Magnolia biondii HOM05D003474 ORTHO05D003971 9.9e-32 141.0 190 43.2
Ca_16530_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 1.3e-31 140.6 193 42.5
DCAR_003502 Daucus carota HOM05D003474 ORTHO05D003971 1.3e-31 140.6 198 41.4
Ca_16531_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 1.7e-31 140.2 193 42.0
Ca_16532_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 1.7e-31 140.2 193 42.5
AUR62003788 Chenopodium quinoa HOM05D003474 ORTHO05D003971 2.2e-31 139.8 206 40.3
Carub.0008s2587 Capsella rubella HOM05D003474 ORTHO05D003971 4.9e-31 138.7 194 41.8
Ca_16533_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 4.9e-31 138.7 204 40.7
VMungo1383G0909 Vigna mungo HOM05D003474 ORTHO05D003971 4.9e-31 138.7 204 41.7
PSO541G6092 Papaver somniferum HOM05D003474 ORTHO05D003971 8.4e-31 137.9 200 39.0
TPR.G17834 Trifolium pratense HOM05D003474 ORTHO05D003971 8.4e-31 137.9 196 42.3
Ah.02g122460 Amaranthus hybridus HOM05D003474 ORTHO05D003971 1.1e-30 137.5 204 40.2
AT5G65030 Arabidopsis thaliana HOM05D003474 ORTHO05D003971 1.9e-30 136.7 198 39.9
TPR.G17845 Trifolium pratense HOM05D003474 ORTHO05D003971 1.9e-30 136.7 196 41.3
BcaC01g02734 Brassica carinata HOM05D003474 ORTHO05D003971 2.5e-30 136.3 196 38.8
C03p61160 Brassica napus HOM05D003474 ORTHO05D003971 2.5e-30 136.3 196 38.8
BolC3t18376H Brassica oleracea HOM05D003474 ORTHO05D003971 2.5e-30 136.3 196 38.8
SalBow5G0419 Salvia bowleyana HOM05D003474 ORTHO05D003971 3.2e-30 136.0 193 37.8
SalBow5G4466 Salvia bowleyana HOM05D003474 ORTHO05D003971 3.2e-30 136.0 193 37.8
BcaC04g19322 Brassica carinata HOM05D003474 ORTHO05D003971 4.2e-30 135.6 199 39.7
C09p67210 Brassica napus HOM05D003474 ORTHO05D003971 4.2e-30 135.6 199 39.7
Glyma.18G017500 Glycine max HOM05D003474 ORTHO05D003971 5.5e-30 135.2 204 40.2
A10p27350 Brassica napus HOM05D003474 ORTHO05D003971 7.1e-30 134.8 199 39.2
Lsat_1_v5_gn_5_43320 Lactuca sativa HOM05D003474 ORTHO05D003971 9.3e-30 134.4 190 40.0
BcaB08g37131 Brassica carinata HOM05D003474 ORTHO05D003971 1.2e-29 134.0 198 40.4
BcaB02g09856 Brassica carinata HOM05D003474 ORTHO05D003971 1.6e-29 133.7 196 38.8
Lsat_1_v5_gn_5_43140 Lactuca sativa HOM05D003474 ORTHO05D003971 1.6e-29 133.7 190 38.9
Lsat_1_v5_gn_5_43240 Lactuca sativa HOM05D003474 ORTHO05D003971 1.6e-29 133.7 190 38.9
Psat5g089920 Pisum sativum HOM05D003474 ORTHO05D003971 1.6e-29 133.7 197 40.6
Sc16g0005640 Simmondsia chinensis HOM05D003474 ORTHO05D003971 1.6e-29 133.7 197 45.7
TPR.G17847 Trifolium pratense HOM05D003474 ORTHO05D003971 1.6e-29 133.7 196 40.8
BraA06t26118Z Brassica rapa HOM05D003474 ORTHO05D003971 2.1e-29 133.3 199 40.2
Medtr3g087280 Medicago truncatula HOM05D003474 ORTHO05D003971 2.1e-29 133.3 201 39.3
PSO781G0183 Papaver somniferum HOM05D003474 ORTHO05D003971 2.1e-29 133.3 200 38.5
SalBow5G3228 Salvia bowleyana HOM05D003474 ORTHO05D003971 2.1e-29 133.3 195 37.4
TPR.G17848 Trifolium pratense HOM05D003474 ORTHO05D003971 2.7e-29 132.9 196 40.3
Atru.chr4.72 Acer truncatum HOM05D003474 ORTHO05D003971 3.5e-29 132.5 237 40.5
Atru.chr4.73 Acer truncatum HOM05D003474 ORTHO05D003971 3.5e-29 132.5 237 40.5
PSO781G0184 Papaver somniferum HOM05D003474 ORTHO05D003971 3.5e-29 132.5 200 37.5
EL10Ac6g15097 Beta vulgaris HOM05D003474 ORTHO05D003971 4.6e-29 132.1 204 37.7
Lsat_1_v5_gn_5_43280 Lactuca sativa HOM05D003474 ORTHO05D003971 4.6e-29 132.1 190 40.0
Sp2g28110 Schrenkiella parvula HOM05D003474 ORTHO05D003971 4.6e-29 132.1 199 40.2
Actinidia28867 Actinidia chinensis HOM05D003474 ORTHO05D003971 7.9e-29 131.3 168 45.2
BolC9t59492H Brassica oleracea HOM05D003474 ORTHO05D003971 7.9e-29 131.3 199 39.2
PSO781G0331 Papaver somniferum HOM05D003474 ORTHO05D003971 1.0e-28 131.0 199 39.2
Psat5g089840 Pisum sativum HOM05D003474 ORTHO05D003971 1.3e-28 130.6 197 40.1
BraA10t44786Z Brassica rapa HOM05D003474 ORTHO05D003971 3.0e-28 129.4 199 38.2
PGR004G1795 Punica granatum HOM05D003474 ORTHO05D003971 3.0e-28 129.4 206 40.3
Sabra05G0062700 Salix brachista HOM05D003474 ORTHO05D003971 5.1e-28 128.6 164 43.3
Lsat_1_v5_gn_5_43760 Lactuca sativa HOM05D003474 ORTHO05D003971 6.7e-28 128.3 210 38.6
Sp6g33190 Schrenkiella parvula HOM05D003474 ORTHO05D003971 6.7e-28 128.3 200 39.0
Lj6g0005521 Lotus japonicus HOM05D003474 ORTHO05D003971 8.7e-28 127.9 195 40.5
Medtr3g087270 Medicago truncatula HOM05D003474 ORTHO05D003971 8.7e-28 127.9 201 38.3
Lj6g0019645 Lotus japonicus HOM05D003474 ORTHO05D003971 1.1e-27 127.5 195 40.5
Psat5g089880 Pisum sativum HOM05D003474 ORTHO05D003971 1.5e-27 127.1 196 39.8
PGSC0003DMG400021798 Solanum tuberosum HOM05D003474 ORTHO05D003971 1.5e-27 127.1 200 41.0
Lsat_1_v5_gn_5_43380 Lactuca sativa HOM05D003474 ORTHO05D003971 3.3e-27 125.9 201 38.3
Psat5g089720 Pisum sativum HOM05D003474 ORTHO05D003971 3.3e-27 125.9 197 40.1
Glyma.11G239900 Glycine max HOM05D003474 ORTHO05D003971 4.3e-27 125.6 206 40.3
Lj6g0012852 Lotus japonicus HOM05D003474 ORTHO05D003971 7.4e-27 124.8 194 39.2
Psat5g089800 Pisum sativum HOM05D003474 ORTHO05D003971 9.6e-27 124.4 197 39.1
Medtr3g087330 Medicago truncatula HOM05D003474 ORTHO05D003971 1.3e-26 124.0 194 39.7
QL06p049605 Quercus lobata HOM05D003474 ORTHO05D003971 1.3e-26 124.0 106 59.4
Medtr3g087275 Medicago truncatula HOM05D003474 ORTHO05D003971 1.6e-26 123.6 173 41.6
TPR.G17829 Trifolium pratense HOM05D003474 ORTHO05D003971 2.1e-26 123.2 196 37.8
Medtr3g087278 Medicago truncatula HOM05D003474 ORTHO05D003971 2.8e-26 122.9 196 38.3
AT5G10210 Arabidopsis thaliana HOM05D003474 ORTHO05D003971 3.7e-26 122.5 192 39.6
PSO781G0304 Papaver somniferum HOM05D003474 ORTHO05D003971 3.7e-26 122.5 201 36.3
DCAR_003503 Daucus carota HOM05D003474 ORTHO05D003971 4.8e-26 122.1 171 40.9
ECA246G4897 Erigeron canadensis HOM05D003474 ORTHO05D003971 4.8e-26 122.1 197 33.5
Aa31LG3G16930 Aethionema arabicum HOM05D003474 ORTHO05D003971 6.2e-26 121.7 192 37.5
Thhalv10014734m.g Eutrema salsugineum HOM05D003474 ORTHO05D003971 6.2e-26 121.7 198 37.4
Sabra07G0076400 Salix brachista HOM05D003474 ORTHO05D003971 6.2e-26 121.7 184 38.6
Migut.L00118 Erythranthe guttata HOM05D003474 ORTHO05D003971 8.2e-26 121.3 192 39.1
Medtr3g087325 Medicago truncatula HOM05D003474 ORTHO05D003971 8.2e-26 121.3 196 38.8
Migut.H02362 Erythranthe guttata HOM05D003474 ORTHO05D003971 1.4e-25 120.6 217 36.9
SalBow3G2422 Salvia bowleyana HOM05D003474 ORTHO05D003971 1.4e-25 120.6 190 38.9
Carub.0006s0867 Capsella rubella HOM05D003474 ORTHO05D003971 3.1e-25 119.4 191 38.7
A06p31850 Brassica napus HOM05D003474 ORTHO05D003971 9.0e-25 117.9 170 37.6
CARHR203080 Cardamine hirsuta HOM05D003474 ORTHO05D003971 2.6e-24 116.3 190 36.8
TPR.G17835 Trifolium pratense HOM05D003474 ORTHO05D003971 4.5e-24 115.5 196 38.3
AL6G20700 Arabidopsis lyrata HOM05D003474 ORTHO05D003971 5.8e-24 115.2 190 38.4
CANSAT01G0924 Cannabis sativa HOM05D003474 ORTHO05D003971 2.9e-23 112.8 211 38.4
Lalb_Chr23g0277351 Lupinus albus HOM05D003474 ORTHO05D003971 2.9e-23 112.8 202 36.1
Phvul.001G251900 Phaseolus vulgaris HOM05D003474 ORTHO05D003971 6.5e-23 111.7 150 41.3
CANSAT01G1468 Cannabis sativa HOM05D003474 ORTHO05D003971 1.1e-22 110.9 211 37.9
Sopen03g021520 Solanum pennellii HOM05D003474 ORTHO05D003971 1.1e-22 110.9 201 37.3
SalBow5G5729 Salvia bowleyana HOM05D003474 ORTHO05D003971 2.5e-22 109.8 156 37.8
CANSAT73G0001 Cannabis sativa HOM05D003474 ORTHO05D003971 7.1e-22 108.2 215 39.1
SalBow5G1505 Salvia bowleyana HOM05D003474 ORTHO05D003971 9.3e-22 107.8 127 41.7
DCAR_003504 Daucus carota HOM05D003474 ORTHO05D003971 1.6e-21 107.1 162 37.7
Solyc03g078620.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 1.6e-21 107.1 206 36.4
Lalb_Chr08g0231081 Lupinus albus HOM05D003474 ORTHO05D003971 3.9e-20 102.4 197 33.0
Nitab4.5_0006517g0020 Nicotiana tabacum HOM05D003474 ORTHO05D003971 1.9e-19 100.1 139 41.0
PGSC0003DMG400001890 Solanum tuberosum HOM05D003474 ORTHO05D003971 1.6e-18 97.1 135 38.5
Solyc04g055140.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 4.8e-18 95.5 137 38.7
SalBow5G3492 Salvia bowleyana HOM05D003474 ORTHO05D003971 1.4e-17 94.0 137 36.5
Solyc04g055150.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 1.8e-17 93.6 137 38.0
Lalb_Chr08g0231071 Lupinus albus HOM05D003474 ORTHO05D003971 2.4e-17 93.2 203 34.5
Sopen04g025010 Solanum pennellii HOM05D003474 ORTHO05D003971 5.3e-17 92.0 135 38.5
Sopen04g025000 Solanum pennellii HOM05D003474 ORTHO05D003971 1.5e-16 90.5 135 39.3
Medtr3g087300 Medicago truncatula HOM05D003474 ORTHO05D003971 3.4e-16 89.4 190 34.2
TPR.G17838 Trifolium pratense HOM05D003474 ORTHO05D003971 5.9e-16 88.6 190 33.2
Solyc04g055130.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 7.7e-16 88.2 135 37.8
BcaB08g37129 Brassica carinata HOM05D003474 ORTHO05D003971 1.3e-15 87.4 99 42.4
Peaxi162Scf00212g00111 Petunia axillaris HOM05D003474 ORTHO05D003971 1.1e-14 84.3 80 52.5
Peaxi162Scf00212g00105 Petunia axillaris HOM05D003474 ORTHO05D003971 2.5e-14 83.2 129 43.4
PGSC0003DMG400001892 Solanum tuberosum HOM05D003474 ORTHO05D003971 3.2e-14 82.8 125 37.6
BcaC04g19323 Brassica carinata HOM05D003474 ORTHO05D003971 1.0e-12 77.8 88 43.2
ATR0753G036 Amborella trichopoda HOM05D003474 ORTHO05D003971 2.8e-10 69.7 186 29.6
SEGI_26050 Sequoiadendron giganteum HOM05D003474 ORTHO05D003971 4.8e-10 68.9 234 28.6
Zm00001eb109720 Zea mays HOM05D003474 ORTHO05D003971 9.1e-09 64.7 108 35.2
Nitab4.5_0000897g0040 Nicotiana tabacum HOM05D003474 ORTHO05D003971 2.9e-07 59.7 91 38.5


User provided reference genes

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