Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0016830 Sechium edule HOM05D005714 ORTHO05D006812 2.7e-181 638.6 348 100.0
MELO3C023776.2 Cucumis melo HOM05D005714 ORTHO05D006812 5.0e-159 564.7 357 86.6
CsaV3_3G020470 Cucumis sativus L. HOM05D005714 ORTHO05D006812 6.7e-156 554.3 350 86.3
ClCG05G011990 Citrullus lanatus HOM05D005714 ORTHO05D006812 1.9e-155 552.7 365 84.9
Dinv33913 Davidia involucrata HOM05D005714 ORTHO05D006812 6.8e-116 421.4 353 66.9
CANSAT64G2721 Cannabis sativa HOM05D005714 ORTHO05D006812 2.9e-111 406.0 351 66.1
CSS0016024 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 3.3e-110 402.5 351 64.1
CSS0020756 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 5.6e-110 401.7 351 64.1
FvH4_6g45610 Fragaria vesca HOM05D005714 ORTHO05D006812 5.6e-110 401.7 352 65.6
MSTRG.2945 Avicennia marina HOM05D005714 ORTHO05D006812 6.1e-109 398.3 352 65.1
Thecc.04G144400 Theobroma cacao HOM05D005714 ORTHO05D006812 6.1e-109 398.3 354 65.3
COL.COLO4_03920 Corchorus olitorius HOM05D005714 ORTHO05D006812 1.0e-108 397.5 349 65.9
MD09G1081200 Malus domestica HOM05D005714 ORTHO05D006812 1.8e-108 396.7 351 65.8
Cfa007977 Carpinus fangiana HOM05D001801 ORTHO05D001739 2.3e-108 396.4 352 65.6
CiPaw.03G006400 Carya illinoinensis HOM05D005714 ORTHO05D006812 4.0e-108 395.6 352 64.8
Prupe.3G242300 Prunus persica HOM05D005714 ORTHO05D006812 6.8e-108 394.8 357 65.3
GSVIVG01036468001 Vitis vinifera HOM05D005714 ORTHO05D006812 6.8e-108 394.8 349 63.3
Lj7A8G44 Lonicera japonica HOM05D005714 ORTHO05D006812 1.5e-107 393.7 351 65.0
Potri.017G110300 Populus trichocarpa HOM05D005714 ORTHO05D006812 2.0e-107 393.3 351 63.8
RcHm_v2.0_Chr2g0163761 Rosa chinensis HOM05D005714 ORTHO05D006812 2.2e-106 389.8 352 63.6
Sabra17G0092200 Salix brachista HOM05D005714 ORTHO05D006812 3.7e-106 389.0 351 63.0
THA.LOC104802994 Tarenaya hassleriana HOM05D005714 ORTHO05D006812 1.8e-105 386.7 350 64.0
Manes.02G065100 Manihot esculenta HOM05D005714 ORTHO05D006812 3.2e-105 386.0 350 65.4
Oeu032870.1 Olea europaea HOM05D005714 ORTHO05D006812 3.2e-105 386.0 353 63.2
Rhsim10G0064900 Rhododendron simsii HOM05D005714 ORTHO05D006812 5.4e-105 385.2 362 61.9
SGA_v2.0_scaffold204G41660 Striga asiatica HOM05D005714 ORTHO05D006812 1.2e-104 384.0 350 62.9
Lalb_Chr21g0317991 Lupinus albus HOM05D005714 ORTHO05D006812 1.7e-103 380.2 353 63.5
Actinidia36301 Actinidia chinensis HOM05D005714 ORTHO05D006812 2.3e-103 379.8 351 62.7
Cpa.g.sc179.47 Carica papaya HOM05D005714 ORTHO05D006812 2.3e-103 379.8 350 64.3
PGR042G2576 Punica granatum HOM05D005714 ORTHO05D006812 5.0e-103 378.6 357 63.0
Medtr6g016870 Medicago truncatula HOM05D005714 ORTHO05D006812 1.5e-102 377.1 359 61.3
Migut.H00540 Erythranthe guttata HOM05D005714 ORTHO05D006812 4.3e-102 375.6 358 62.8
Gohir.D11G174600 Gossypium hirsutum HOM05D005714 ORTHO05D006812 5.6e-102 375.2 352 63.6
Cc07_g04960 Coffea canephora HOM05D005714 ORTHO05D006812 1.2e-101 374.0 359 61.8
MD17G1072600 Malus domestica HOM05D005714 ORTHO05D006812 1.2e-101 374.0 351 63.2
Gorai.007G187100 Gossypium raimondii HOM05D005714 ORTHO05D006812 2.1e-101 373.2 352 63.4
Eucgr.J01456 Eucalyptus grandis HOM05D005714 ORTHO05D006812 8.0e-101 371.3 353 61.2
Aa31LG11G13710 Aethionema arabicum HOM05D005714 ORTHO05D006812 1.2e-99 367.5 350 60.9
Nn3g17645 Nelumbo nucifera HOM05D005714 ORTHO05D006812 1.2e-99 367.5 361 60.1
SalBow1G2935 Salvia bowleyana HOM05D005714 ORTHO05D006812 2.0e-99 366.7 352 59.9
Nitab4.5_0000612g0140 Nicotiana tabacum HOM05D005714 ORTHO05D006812 2.6e-99 366.3 350 61.7
SalBow1G3421 Salvia bowleyana HOM05D005714 ORTHO05D006812 5.8e-99 365.2 352 59.9
Phvul.004G049100 Phaseolus vulgaris HOM05D005714 ORTHO05D006812 4.9e-98 362.1 349 61.0
Thhalv10015850m.g Eutrema salsugineum HOM05D005714 ORTHO05D006812 6.4e-98 361.7 350 60.6
Sp6g28230 Schrenkiella parvula HOM05D005714 ORTHO05D006812 8.3e-98 361.3 350 60.9
Duzib138G1804 Durio zibethinus HOM05D005714 ORTHO05D006812 1.1e-97 360.9 355 60.3
Atru.BG.225.p Acer truncatum HOM05D005714 ORTHO05D006812 1.4e-97 360.5 354 62.7
Carub.0006s1407 Capsella rubella HOM05D005714 ORTHO05D006812 1.9e-97 360.1 350 60.9
CARHR197420 Cardamine hirsuta HOM05D005714 ORTHO05D006812 1.9e-97 360.1 350 60.3
Ca_20731_v3 Cicer arietinum L. HOM05D005714 ORTHO05D006812 1.9e-97 360.1 355 61.1
MBI15_g36941_MAGBIO Magnolia biondii HOM05D005714 ORTHO05D006812 4.1e-97 359.0 353 58.9
Peaxi162Scf00479g00037 Petunia axillaris HOM05D005714 ORTHO05D006812 5.4e-97 358.6 350 60.3
AT5G15880 Arabidopsis thaliana HOM05D005714 ORTHO05D006812 2.0e-96 356.7 350 60.3
Sc10g0001430 Simmondsia chinensis HOM05D005714 ORTHO05D006812 2.7e-96 356.3 351 60.7
C03p08510 Brassica napus HOM05D005714 ORTHO05D006812 4.6e-96 355.5 349 59.9
C03p08640 Brassica napus HOM05D005714 ORTHO05D006812 1.0e-95 354.4 351 59.5
BolC3t13366H Brassica oleracea HOM05D005714 ORTHO05D006812 1.0e-95 354.4 351 59.5
Potri.004G105400 Populus trichocarpa HOM05D005714 ORTHO05D006812 1.7e-95 353.6 356 60.4
QL02p053457 Quercus lobata HOM05D005714 ORTHO05D006812 3.0e-95 352.8 351 60.1
BolC3t13356H Brassica oleracea HOM05D005714 ORTHO05D006812 3.9e-95 352.4 349 59.6
Aqoxy3G03832 Aquilegia oxysepala HOM05D005714 ORTHO05D006812 6.6e-95 351.7 349 59.6
PSO063G3590 Papaver somniferum HOM05D005714 ORTHO05D006812 6.6e-95 351.7 356 58.4
AL6G26770 Arabidopsis lyrata HOM05D005714 ORTHO05D006812 8.6e-95 351.3 350 60.3
AL6G26782 Arabidopsis lyrata HOM05D005714 ORTHO05D006812 8.6e-95 351.3 350 60.3
A03p07460 Brassica napus HOM05D005714 ORTHO05D006812 1.5e-94 350.5 351 59.5
BraA03t10075Z Brassica rapa HOM05D005714 ORTHO05D006812 2.5e-94 349.7 351 59.5
BraA03t10072Z Brassica rapa HOM05D005714 ORTHO05D006812 1.2e-93 347.4 351 59.3
TPR.G9671 Trifolium pratense HOM05D005714 ORTHO05D006812 2.1e-93 346.7 356 59.3
FAN09G3422 Fragaria x ananassa HOM05D005714 ORTHO05D006812 3.6e-93 345.9 352 59.7
PGSC0003DMG400018763 Solanum tuberosum HOM05D005714 ORTHO05D006812 3.6e-93 345.9 351 58.4
BraA10t44382Z Brassica rapa HOM05D005714 ORTHO05D006812 6.2e-93 345.1 351 60.4
BcaB08g36870 Brassica carinata HOM05D005714 ORTHO05D006812 2.3e-92 343.2 350 60.3
ECA232G3066 Erigeron canadensis HOM05D005714 ORTHO05D006812 3.1e-92 342.8 356 59.0
CSS0044543 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 4.0e-92 342.4 352 59.1
CSS0047938 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 4.0e-92 342.4 352 59.1
Nitab4.5_0003161g0010 Nicotiana tabacum HOM05D005714 ORTHO05D006812 6.8e-92 341.7 343 59.2
Hund16108 Selenicereus undatus HOM05D005714 ORTHO05D006812 2.6e-91 339.7 364 58.5
CAN.G551.30 Capsicum annuum HOM05D005714 ORTHO05D006812 3.4e-91 339.3 348 58.9
EL10Ac2g04627 Beta vulgaris HOM05D005714 ORTHO05D006812 4.9e-90 335.5 351 57.0
vmacro05584 Vaccinium macrocarpon HOM05D005714 ORTHO05D006812 4.9e-90 335.5 403 52.4
Sabra04G0076700 Salix brachista HOM05D005714 ORTHO05D006812 1.4e-89 334.0 422 51.2
Lj2g0024465 Lotus japonicus HOM05D005714 ORTHO05D006812 9.2e-89 331.3 348 57.5
Ah.10g037360 Amaranthus hybridus HOM05D005714 ORTHO05D006812 6.0e-88 328.6 339 57.5
arahy.Tifrunner.gnm1.ann1.AEQW57 Arachis hypogaea HOM05D005714 ORTHO05D006812 1.7e-87 327.0 350 57.7
HanXRQChr15g0490211 Helianthus annuus HOM05D005714 ORTHO05D006812 1.7e-87 327.0 352 58.2
BolC9t58957H Brassica oleracea HOM05D005714 ORTHO05D006812 2.5e-86 323.2 355 58.0
TWI74G1644 Tripterygium wilfordii HOM05D005714 ORTHO05D006812 2.5e-86 323.2 356 57.0
PSO782G2399 Papaver somniferum HOM05D005714 ORTHO05D006812 6.2e-85 318.5 342 55.6
BcaB01g05015 Brassica carinata HOM05D005714 ORTHO05D006812 2.3e-84 316.6 347 56.5
Ciclev10012317m.g Citrus clementina HOM05D005714 ORTHO05D006812 3.4e-83 312.8 297 60.3
arahy.Tifrunner.gnm1.ann1.R8VTVZ Arachis hypogaea HOM05D005714 ORTHO05D006812 5.8e-83 312.0 372 54.0
CDE02G2817 Ceratophyllum demersum HOM05D005714 ORTHO05D006812 1.3e-82 310.8 383 51.7
HPP92_027404 Vanilla planifolia HOM05D005714 ORTHO05D006812 8.4e-82 308.1 352 52.8
Lsat_1_v5_gn_4_175801 Lactuca sativa HOM05D005714 ORTHO05D006812 7.1e-81 305.1 293 61.1
Os09g0108400 Oryza sativa ssp. japonica HOM05D005714 ORTHO05D006812 3.3e-78 296.2 351 50.7
Gohir.A11G168300 Gossypium hirsutum HOM05D005714 ORTHO05D006812 1.3e-69 267.7 256 60.9
unitig_899.g15126 Utricularia gibba HOM05D005714 ORTHO05D006812 1.3e-69 267.7 351 49.6
Actinidia18116 Actinidia chinensis HOM05D005714 ORTHO05D006812 3.4e-67 259.6 353 51.0
Zm00001eb208920 Zea mays HOM05D005714 ORTHO05D006812 9.6e-62 241.5 332 46.1
Psat1g062640 Pisum sativum HOM05D005714 ORTHO05D006812 1.1e-60 238.0 233 60.5
FAN05G0119 Fragaria x ananassa HOM05D005714 ORTHO05D006812 1.2e-56 224.6 201 62.7
Solyc03g046260.2 Solanum lycopersicum HOM05D005714 ORTHO05D006812 5.3e-52 209.1 232 54.3
VMungo0464G1377 Vigna mungo HOM05D005714 ORTHO05D006812 2.6e-51 206.8 235 55.3
TAR622G1272 Trochodendron aralioides HOM05D005714 ORTHO05D006812 4.5e-51 206.1 159 67.3
Cfa007975 Carpinus fangiana HOM05D005714 ORTHO05D006812 1.3e-50 204.5 318 47.5
RcHm_v2.0_Chr2g0163701 Rosa chinensis HOM05D005714 ORTHO05D006812 2.9e-50 203.4 143 74.1
Glyma.19G041200 Glycine max HOM05D005714 ORTHO05D006812 3.3e-46 189.9 179 63.7
AagrBONN_evm.TU.Sc2ySwM_344.4539 Anthoceros agrestis HOM05D005714 ORTHO05D006812 7.9e-40 168.7 293 38.6
MD17G1072400 Malus domestica HOM05D005714 ORTHO05D006812 7.4e-38 162.2 202 51.5
ATR0752G125 Amborella trichopoda HOM05D005714 ORTHO05D006812 1.4e-36 157.9 150 61.3
Pp3c1_6350 Physcomitrium patens HOM05D005714 ORTHO05D006812 2.0e-35 154.1 378 33.3
AUR62014554 Chenopodium quinoa HOM05D005714 ORTHO05D006812 8.5e-34 148.7 233 43.3
AUR62008947 Chenopodium quinoa HOM05D005714 ORTHO05D006812 2.5e-33 147.1 236 43.6
C09p61160 Brassica napus HOM05D005714 ORTHO05D006812 1.8e-31 141.0 106 70.8
A10p17320 Brassica napus HOM05D000327 ORTHO05D006812 8.8e-31 138.7 229 45.4
SMO139G0044 Selaginella moellendorffii HOM05D005714 ORTHO05D006812 1.5e-30 137.9 338 34.3
Sopen03g009720 Solanum pennellii HOM05D005714 ORTHO05D006812 2.2e-29 134.0 98 68.4
ATR0752G036 Amborella trichopoda HOM05D005714 ORTHO05D006812 2.4e-28 130.6 229 42.8
Mapoly0066s0019 Marchantia polymorpha HOM05D005714 ORTHO05D006812 4.1e-28 129.8 370 30.8
C09p61150 Brassica napus HOM05D005714 ORTHO05D006812 9.7e-22 108.6 101 63.4
BcaC04g18926 Brassica carinata HOM05D005714 ORTHO05D006812 2.8e-21 107.1 314 33.8
Medtr3g067495 Medicago truncatula HOM05D005714 ORTHO05D006812 1.1e-20 105.1 93 63.4
SMO145G0024 Selaginella moellendorffii HOM05D005714 ORTHO05D006812 5.3e-20 102.8 324 32.1
SEGI_16525 Sequoiadendron giganteum HOM05D005714 ORTHO05D006812 8.0e-16 89.0 99 47.5
RcHm_v2.0_Chr2g0163721 Rosa chinensis HOM05D005714 ORTHO05D006812 5.2e-15 86.3 68 67.6
BcaB07g33635 Brassica carinata HOM05D005714 ORTHO05D006812 4.4e-14 83.2 122 48.4
SEGI_18448 Sequoiadendron giganteum HOM05D005714 ORTHO05D006812 1.7e-13 81.3 237 32.5
RcHm_v2.0_Chr2g0163711 Rosa chinensis HOM05D005714 ORTHO05D006812 2.2e-13 80.9 74 63.5
RcHm_v2.0_Chr2g0163621 Rosa chinensis HOM05D005714 ORTHO05D006812 1.3e-10 71.6 86 53.5
SGA_v2.0_scaffold254G45250 Striga asiatica HOM05D005714 ORTHO05D051379 1.6e-08 64.7 47 72.3
FAN09G3753 Fragaria x ananassa HOM05D001104 ORTHO05D008876 3.6e-08 63.5 52 63.5


User provided reference genes

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