Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0016828 Sechium edule HOM05D003947 ORTHO05D004614 1.3e-100 369.8 187 100.0
ClCG08G003050 Citrullus lanatus HOM05D003947 ORTHO05D004614 1.2e-79 300.1 181 84.5
Sed0008617 Sechium edule HOM05D003947 ORTHO05D004614 3.1e-75 285.4 186 79.0
Haze_17801 Corylus avellana HOM05D003947 ORTHO05D004614 1.4e-62 243.4 185 68.1
Cfa018286 Carpinus fangiana HOM05D003947 ORTHO05D004614 2.0e-61 239.6 184 67.9
MD10G1033900 Malus domestica HOM05D003947 ORTHO05D004614 2.0e-61 239.6 184 66.8
QL02p038162 Quercus lobata HOM05D003947 ORTHO05D004614 3.3e-61 238.8 186 66.7
Prupe.8G040000 Prunus persica HOM05D003947 ORTHO05D004614 9.7e-61 237.3 184 66.8
Thecc.08G158700 Theobroma cacao HOM05D003947 ORTHO05D004614 4.8e-60 235.0 185 65.9
TWI32G0514 Tripterygium wilfordii HOM05D003947 ORTHO05D004614 3.1e-59 232.3 184 64.7
Dinv41043 Davidia involucrata HOM05D003947 ORTHO05D004614 1.6e-58 229.9 185 64.3
Potri.005G196300 Populus trichocarpa HOM05D003947 ORTHO05D004614 1.6e-58 229.9 184 65.2
Manes.18G094500 Manihot esculenta HOM05D003947 ORTHO05D004614 2.0e-58 229.6 184 64.7
Cpa.g.sc26.88 Carica papaya HOM05D003947 ORTHO05D004614 2.6e-58 229.2 185 65.4
GSVIVG01034579001 Vitis vinifera HOM05D003947 ORTHO05D004614 1.0e-57 227.3 184 65.8
Manes.02G182900 Manihot esculenta HOM05D003947 ORTHO05D004614 1.3e-57 226.9 184 64.7
CANSAT25G3237 Cannabis sativa HOM05D003947 ORTHO05D004614 3.8e-57 225.3 186 65.1
CiPaw.15G012800 Carya illinoinensis HOM05D003947 ORTHO05D004614 3.8e-57 225.3 185 65.9
MD05G1032900 Malus domestica HOM05D003947 ORTHO05D004614 5.0e-57 224.9 184 63.6
Sabra02G0051800 Salix brachista HOM05D003947 ORTHO05D004614 5.0e-57 224.9 184 63.6
COL.COLO4_03360 Corchorus olitorius HOM05D003947 ORTHO05D004614 8.5e-57 224.2 187 63.1
Sabra05G0149600 Salix brachista HOM05D003947 ORTHO05D004614 8.5e-57 224.2 184 63.0
Atru.chr13.2012 Acer truncatum HOM05D003947 ORTHO05D004614 1.9e-56 223.0 189 64.0
Hma1.2p1_0358F.1_g134715 Hydrangea macrophylla HOM05D003947 ORTHO05D004614 4.2e-56 221.9 189 63.0
TWI60G0849 Tripterygium wilfordii HOM05D003947 ORTHO05D004614 9.4e-56 220.7 184 60.9
AUR62034897 Chenopodium quinoa HOM05D003947 ORTHO05D004614 2.1e-55 219.5 186 60.8
Glyma.10G221900 Glycine max HOM05D003947 ORTHO05D004614 4.7e-55 218.4 188 62.2
vmacro21121 Vaccinium macrocarpon HOM05D003947 ORTHO05D004614 4.7e-55 218.4 189 61.9
Eucgr.F04191 Eucalyptus grandis HOM05D003947 ORTHO05D004614 1.0e-54 217.2 184 63.0
TAR625G1169 Trochodendron aralioides HOM05D003947 ORTHO05D004614 1.0e-54 217.2 188 62.2
Glyma.20G169600 Glycine max HOM05D003947 ORTHO05D004614 1.8e-54 216.5 187 61.5
Sc02g0003850 Simmondsia chinensis HOM05D003947 ORTHO05D004614 1.8e-54 216.5 183 61.2
Potri.002G064900 Populus trichocarpa HOM05D003947 ORTHO05D004614 4.0e-54 215.3 184 60.9
Actinidia17770 Actinidia chinensis HOM05D003947 ORTHO05D004614 5.2e-54 214.9 185 62.2
Duzib093G0177 Durio zibethinus HOM05D003947 ORTHO05D004614 6.8e-54 214.5 185 61.6
Gorai.005G077400 Gossypium raimondii HOM05D003947 ORTHO05D004614 6.8e-54 214.5 187 62.0
RcHm_v2.0_Chr6g0274321 Rosa chinensis HOM05D003947 ORTHO05D004614 6.8e-54 214.5 185 62.7
Ca_10666_v3 Cicer arietinum L. HOM05D003947 ORTHO05D004614 8.8e-54 214.2 187 63.1
Gohir.A02G062801 Gossypium hirsutum HOM05D003947 ORTHO05D004614 8.8e-54 214.2 187 62.0
CSS0022992 Camellia sinensis var. sinensis HOM05D003947 ORTHO05D004614 1.2e-53 213.8 186 61.3
Duzib116G0212 Durio zibethinus HOM05D003947 ORTHO05D004614 1.2e-53 213.8 185 62.2
Gohir.D02G068500 Gossypium hirsutum HOM05D003947 ORTHO05D004614 2.0e-53 213.0 187 61.5
Psat6g190840 Pisum sativum HOM05D003947 ORTHO05D004614 2.6e-53 212.6 185 62.2
Peaxi162Scf00360g00029 Petunia axillaris HOM05D003947 ORTHO05D004614 3.4e-53 212.2 187 59.9
PGSC0003DMG401025066 Solanum tuberosum HOM05D003947 ORTHO05D004614 3.4e-53 212.2 187 61.5
arahy.Tifrunner.gnm1.ann1.P1AQDG Arachis hypogaea HOM05D003947 ORTHO05D004614 4.4e-53 211.8 184 61.4
Hma1.2p1_0678F.1_g202000 Hydrangea macrophylla HOM05D003947 ORTHO05D004614 5.7e-53 211.5 187 62.0
Nitab4.5_0002812g0010 Nicotiana tabacum HOM05D003947 ORTHO05D004614 5.7e-53 211.5 187 59.9
Actinidia29546 Actinidia chinensis HOM05D003947 ORTHO05D004614 9.8e-53 210.7 187 58.8
arahy.Tifrunner.gnm1.ann1.8MR9WY Arachis hypogaea HOM05D003947 ORTHO05D004614 1.7e-52 209.9 184 60.9
FvH4_2g13060 Fragaria vesca HOM05D003947 ORTHO05D004614 2.2e-52 209.5 185 60.5
FAN24G1125 Fragaria x ananassa HOM05D003947 ORTHO05D004614 2.2e-52 209.5 185 60.5
Nitab4.5_0000099g0180 Nicotiana tabacum HOM05D003947 ORTHO05D004614 2.2e-52 209.5 187 59.9
Lj5g0019118 Lotus japonicus HOM05D003947 ORTHO05D004614 2.8e-52 209.1 189 61.9
Sopen04g027950 Solanum pennellii HOM05D003947 ORTHO05D004614 2.8e-52 209.1 187 61.0
Phvul.007G083100 Phaseolus vulgaris HOM05D003947 ORTHO05D004614 3.7e-52 208.8 188 59.0
Solyc04g071970.4 Solanum lycopersicum HOM05D003947 ORTHO05D004614 3.7e-52 208.8 187 61.0
Duzib041G0104 Durio zibethinus HOM05D003947 ORTHO05D004614 4.8e-52 208.4 187 59.4
arahy.Tifrunner.gnm1.ann1.H1TMWI Arachis hypogaea HOM05D003947 ORTHO05D004614 6.3e-52 208.0 184 62.0
Cc10_g15190 Coffea canephora HOM05D003947 ORTHO05D004614 6.3e-52 208.0 183 60.7
VMungo0720G0983 Vigna mungo HOM05D003947 ORTHO05D004614 6.3e-52 208.0 187 59.4
Gohir.A05G246100 Gossypium hirsutum HOM05D003947 ORTHO05D004614 4.1e-51 205.3 186 61.3
Gohir.D05G247600 Gossypium hirsutum HOM05D003947 ORTHO05D004614 5.4e-51 204.9 186 61.3
Gorai.009G258400 Gossypium raimondii HOM05D003947 ORTHO05D004614 9.1e-51 204.1 186 61.3
arahy.Tifrunner.gnm1.ann1.2W58SS Arachis hypogaea HOM05D003947 ORTHO05D004614 1.2e-50 203.8 184 61.4
FAN27G1126 Fragaria x ananassa HOM05D003947 ORTHO05D004614 1.2e-50 203.8 185 59.5
Ciclev10002453m.g Citrus clementina HOM05D003947 ORTHO05D004614 1.6e-50 203.4 191 61.8
AUR62026639 Chenopodium quinoa HOM05D003947 ORTHO05D004614 2.7e-50 202.6 186 58.1
Hund17479 Selenicereus undatus HOM05D003947 ORTHO05D004614 2.7e-50 202.6 185 58.4
Ah.05g168170 Amaranthus hybridus HOM05D003947 ORTHO05D004614 3.5e-50 202.2 183 58.5
FAN15G1092 Fragaria x ananassa HOM05D003947 ORTHO05D004614 3.5e-50 202.2 184 59.2
Lalb_Chr21g0305571 Lupinus albus HOM05D003947 ORTHO05D004614 3.5e-50 202.2 185 61.1
TAR628G1588 Trochodendron aralioides HOM05D003947 ORTHO05D004614 3.5e-50 202.2 183 59.0
Lj7P382T65 Lonicera japonica HOM05D003947 ORTHO05D004614 4.5e-50 201.8 190 58.9
PGR044G0664 Punica granatum HOM05D003947 ORTHO05D004614 4.5e-50 201.8 189 58.2
Medtr1g098260 Medicago truncatula HOM05D003947 ORTHO05D004614 5.9e-50 201.4 188 60.1
CiPaw.16G008700 Carya illinoinensis HOM05D003947 ORTHO05D004614 1.7e-49 199.9 184 64.1
Glyma.16G163700 Glycine max HOM05D003947 ORTHO05D004614 1.6e-47 193.4 184 58.2
MSTRG.25300 Avicennia marina HOM05D003947 ORTHO05D004614 3.6e-47 192.2 201 53.7
SalBow6G2315 Salvia bowleyana HOM05D003947 ORTHO05D004614 3.6e-47 192.2 194 56.2
SalBow7G0665 Salvia bowleyana HOM05D003947 ORTHO05D004614 4.7e-47 191.8 189 56.1
TAR376G1220 Trochodendron aralioides HOM05D003947 ORTHO05D004614 6.1e-47 191.4 183 56.8
TAR381G1088 Trochodendron aralioides HOM05D003947 ORTHO05D004614 1.0e-46 190.7 181 58.6
Oeu051281.1 Olea europaea HOM05D003947 ORTHO05D004614 2.6e-45 186.0 192 56.8
Lalb_Chr02g0141531 Lupinus albus HOM05D003947 ORTHO05D004614 9.8e-45 184.1 185 56.8
Aqoxy6G00408 Aquilegia oxysepala HOM05D003947 ORTHO05D004614 2.2e-44 183.0 188 54.3
MBI04_g08942_MAGBIO Magnolia biondii HOM05D003947 ORTHO05D004614 2.8e-44 182.6 186 57.5
Oeu017623.1 Olea europaea HOM05D003947 ORTHO05D004614 4.9e-44 181.8 192 52.6
Glyma.02G079300 Glycine max HOM05D003947 ORTHO05D004614 8.3e-44 181.0 184 57.1
Oeu002064.1 Olea europaea HOM05D003947 ORTHO05D004614 1.1e-43 180.6 190 54.2
Oeu022056.3 Olea europaea HOM05D003947 ORTHO05D004614 1.1e-43 180.6 194 51.5
VMungo0464G0903 Vigna mungo HOM05D003947 ORTHO05D004614 1.1e-43 180.6 185 56.2
Lj4P703T37 Lonicera japonica HOM05D003947 ORTHO05D004614 1.4e-43 180.3 191 55.0
Rhsim11G0087300 Rhododendron simsii HOM05D003947 ORTHO05D004614 5.4e-43 178.3 186 55.4
Aa31LG7G6750 Aethionema arabicum HOM05D003947 ORTHO05D004614 7.0e-43 177.9 186 55.4
Hund26679 Selenicereus undatus HOM05D003947 ORTHO05D004614 7.0e-43 177.9 184 53.3
MSTRG.24219 Avicennia marina HOM05D003947 ORTHO05D004614 4.5e-42 175.3 193 53.9
DCAR_001161 Daucus carota HOM05D003947 ORTHO05D004614 4.5e-42 175.3 186 52.7
Rhsim06G0091600 Rhododendron simsii HOM05D003947 ORTHO05D004614 2.3e-41 172.9 206 53.9
MSTRG.1106 Avicennia marina HOM05D003947 ORTHO05D004614 2.9e-41 172.6 194 51.0
HPP92_002802 Vanilla planifolia HOM05D003947 ORTHO05D004614 1.1e-40 170.6 184 52.2
THA.LOC104810422 Tarenaya hassleriana HOM05D003947 ORTHO05D004614 3.3e-40 169.1 187 52.4
Actinidia04751 Actinidia chinensis HOM05D003947 ORTHO05D004614 5.6e-40 168.3 184 54.3
Migut.C00963 Erythranthe guttata HOM05D003947 ORTHO05D004614 5.6e-40 168.3 201 53.2
vmacro01489 Vaccinium macrocarpon HOM05D003947 ORTHO05D004614 5.6e-40 168.3 186 52.2
AL1G36340 Arabidopsis lyrata HOM05D003947 ORTHO05D004614 1.2e-39 167.2 192 52.1
Carub.0001s2230 Capsella rubella HOM05D003947 ORTHO05D004614 1.2e-39 167.2 195 52.3
Dinv25896 Davidia involucrata HOM05D003947 ORTHO05D004614 1.6e-39 166.8 189 50.3
PSO675G7401 Papaver somniferum HOM05D003947 ORTHO05D004614 1.6e-39 166.8 185 53.5
AT1G22790 Arabidopsis thaliana HOM05D003947 ORTHO05D004614 3.6e-39 165.6 194 52.6
Manes.16G051400 Manihot esculenta HOM05D003947 ORTHO05D004614 4.7e-39 165.2 149 58.4
THA.LOC104806764 Tarenaya hassleriana HOM05D003947 ORTHO05D004614 8.0e-39 164.5 186 50.5
CARHR023150 Cardamine hirsuta HOM05D003947 ORTHO05D004614 1.8e-38 163.3 204 52.0
PSO541G4258 Papaver somniferum HOM05D003947 ORTHO05D004614 2.3e-38 162.9 185 51.4
THA.LOC104813088 Tarenaya hassleriana HOM05D003947 ORTHO05D004614 1.5e-37 160.2 186 50.0
Lsat_1_v5_gn_1_5261 Lactuca sativa HOM05D003947 ORTHO05D004614 2.6e-37 159.5 220 47.3
CSS0014660 Camellia sinensis var. sinensis HOM05D003947 ORTHO05D004614 3.7e-36 155.6 184 47.8
SGA_v2.0_scaffold108G30867 Striga asiatica HOM05D003947 ORTHO05D004614 4.9e-36 155.2 187 52.4
Lalb_Chr19g0130101 Lupinus albus HOM05D003947 ORTHO05D004614 8.3e-36 154.5 184 51.1
TPR.G17018 Trifolium pratense HOM05D003947 ORTHO05D004614 5.4e-35 151.8 152 55.9
Aa31LG4G8980 Aethionema arabicum HOM05D003947 ORTHO05D004614 7.0e-35 151.4 186 49.5
Os01g0589700 Oryza sativa ssp. japonica HOM05D003947 ORTHO05D004614 7.0e-35 151.4 188 47.9
Thhalv10008850m.g Eutrema salsugineum HOM05D003947 ORTHO05D004614 3.5e-34 149.1 186 47.8
Nn1g06005 Nelumbo nucifera HOM05D003947 ORTHO05D004614 3.5e-34 149.1 190 48.4
ECA246G0665 Erigeron canadensis HOM05D003947 ORTHO05D006423 4.6e-34 148.7 193 47.2
Aa31LG6G8230 Aethionema arabicum HOM05D003947 ORTHO05D004614 1.0e-33 147.5 184 48.4
Migut.N03200 Erythranthe guttata HOM05D003947 ORTHO05D004614 1.7e-33 146.7 200 46.5
HanXRQChr10g0278611 Helianthus annuus HOM05D003947 ORTHO05D004614 1.7e-33 146.7 193 49.2
PGR042G2534 Punica granatum HOM05D003947 ORTHO05D004614 3.0e-33 146.0 186 48.4
Phvul.004G091200 Phaseolus vulgaris HOM05D003947 ORTHO05D004614 5.0e-33 145.2 184 47.8
SGA_v2.0_scaffold195G40776 Striga asiatica HOM05D003947 ORTHO05D004614 5.0e-33 145.2 170 51.2
Sp1g29270 Schrenkiella parvula HOM05D003947 ORTHO05D004614 4.3e-32 142.1 185 47.0
MELO3C008326.2 Cucumis melo HOM05D003947 ORTHO05D004614 9.5e-32 141.0 187 48.7
CsaV3_6G005040 Cucumis sativus L. HOM05D003947 ORTHO05D004614 3.6e-31 139.0 187 47.1
Lj2g0016258 Lotus japonicus HOM05D003947 ORTHO05D004614 4.7e-31 138.7 187 50.3
Carub.0001s3209 Capsella rubella HOM05D003947 ORTHO05D004614 6.2e-31 138.3 189 47.1
AL1G48450 Arabidopsis lyrata HOM05D003947 ORTHO05D004614 1.8e-30 136.7 186 46.2
HanXRQChr05g0162361 Helianthus annuus HOM05D003947 ORTHO05D004614 1.8e-30 136.7 194 45.9
CARHR033390 Cardamine hirsuta HOM05D003947 ORTHO05D004614 8.9e-30 134.4 194 46.9
BcaB07g33023 Brassica carinata HOM05D030501 ORTHO05D004614 1.2e-29 134.0 186 45.7
BraA09t38788Z Brassica rapa HOM05D003947 ORTHO05D004614 1.2e-29 134.0 185 45.9
Zm00001eb357510 Zea mays HOM05D003947 ORTHO05D004614 1.5e-29 133.7 191 41.9
A09p32460 Brassica napus HOM05D003947 ORTHO05D004614 2.0e-29 133.3 184 45.7
BolC5t32518H Brassica oleracea HOM05D003947 ORTHO05D004614 2.0e-29 133.3 184 43.5
ClCG08G007400 Citrullus lanatus HOM05D003947 ORTHO05D004614 2.0e-29 133.3 187 46.0
Zm00001eb160770 Zea mays HOM05D003947 ORTHO05D004614 2.6e-29 132.9 189 44.4
AT1G34010 Arabidopsis thaliana HOM05D003947 ORTHO05D004614 1.3e-28 130.6 188 44.1
C05p37750 Brassica napus HOM05D003947 ORTHO05D004614 3.7e-28 129.0 186 41.9
unitig_32.g11256 Utricularia gibba HOM05D003947 ORTHO05D004614 8.3e-28 127.9 204 42.2
BcaC08g43824 Brassica carinata HOM05D003947 ORTHO05D004614 1.4e-27 127.1 184 46.2
BolC6t36345H Brassica oleracea HOM05D003947 ORTHO05D004614 1.4e-27 127.1 184 46.2
C06p12080 Brassica napus HOM05D003947 ORTHO05D004614 1.9e-27 126.7 184 46.2
BcaC05g27781 Brassica carinata HOM05D003947 ORTHO05D004614 5.4e-27 125.2 184 41.8
BraA05t21288Z Brassica rapa HOM05D003947 ORTHO05D006423 7.0e-27 124.8 186 41.4
A05p24080 Brassica napus HOM05D003947 ORTHO05D004614 2.7e-26 122.9 184 41.8
BcaNung06442 Brassica carinata HOM05D003947 ORTHO05D004614 3.3e-24 115.9 211 43.1
SHI09085 Sapria himalayana HOM05D003947 ORTHO05D004614 1.6e-23 113.6 190 43.2
BraA09t39684Z Brassica rapa HOM05D003947 ORTHO05D004614 8.1e-23 111.3 206 43.7
SalBow7G0026 Salvia bowleyana HOM05D003947 ORTHO05D004614 1.4e-22 110.5 101 59.4
PSO700G0284 Papaver somniferum HOM05D003947 ORTHO05D004614 8.9e-22 107.8 190 38.9
Actinidia26828 Actinidia chinensis HOM05D003947 ORTHO05D004614 1.5e-21 107.1 149 45.6
PSO170G0396 Papaver somniferum HOM05D003947 ORTHO05D004614 3.7e-20 102.4 195 38.5
ATR1120G111 Amborella trichopoda HOM05D003947 ORTHO05D004614 1.4e-19 100.5 198 41.4
Lsat_1_v5_gn_6_101640 Lactuca sativa HOM05D003947 ORTHO05D004614 3.5e-18 95.9 194 38.7
Sed0006124 Sechium edule HOM05D003947 ORTHO05D004614 1.3e-17 94.0 141 41.8
Sed0022469 Sechium edule HOM05D003947 ORTHO05D004614 1.2e-15 87.4 151 41.1
Os05g0591450 Oryza sativa ssp. japonica HOM05D003947 ORTHO05D004614 4.7e-15 85.5 88 53.4
Lsat_1_v5_gn_9_42121 Lactuca sativa HOM05D003947 ORTHO05D004614 6.2e-15 85.1 158 38.0
BcaNung06106 Brassica carinata HOM05D003947 ORTHO05D004614 2.6e-13 79.7 153 41.8
A09p41960 Brassica napus HOM05D003947 ORTHO05D004614 4.4e-13 79.0 196 37.8
C05p21890 Brassica napus HOM05D003947 ORTHO05D004614 7.6e-13 78.2 151 41.7
BolC5t30884H Brassica oleracea HOM05D003947 ORTHO05D004614 1.3e-12 77.4 212 35.8
Aqoxy5G02026 Aquilegia oxysepala HOM05D003947 ORTHO05D004614 6.6e-09 65.1 152 34.9
HPP92_002804 Vanilla planifolia HOM05D003947 ORTHO05D004614 3.6e-07 59.3 122 38.5


User provided reference genes

Program Settings