Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0016795 Sechium edule HOM05D003751 ORTHO05D004765 4.5e-77 292.4 331 100.0
CsaV3_5G033180 Cucumis sativus L. HOM05D003751 ORTHO05D004765 1.8e-62 243.8 331 92.4
GSVIVG01012205001 Vitis vinifera HOM05D003751 ORTHO05D004765 1.3e-55 221.1 316 92.7
Lalb_Chr17g0341071 Lupinus albus HOM05D003751 ORTHO05D004765 6.3e-55 218.8 327 89.9
Ah.03g139090 Amaranthus hybridus HOM05D003751 ORTHO05D004765 1.8e-54 217.2 329 86.9
QL03p071051 Quercus lobata HOM05D003751 ORTHO05D004765 2.4e-54 216.9 327 86.9
Sed0012304 Sechium edule HOM05D003751 ORTHO05D004765 4.1e-54 216.1 321 88.5
Lj6A782T110 Lonicera japonica HOM05D003751 ORTHO05D004765 7.0e-54 215.3 319 91.5
Lsat_1_v5_gn_4_12041 Lactuca sativa HOM05D003751 ORTHO05D004765 9.2e-54 214.9 319 90.3
arahy.Tifrunner.gnm1.ann1.V223R1 Arachis hypogaea HOM05D003751 ORTHO05D004765 1.6e-53 214.2 327 89.6
arahy.Tifrunner.gnm1.ann1.Y3WTJM Arachis hypogaea HOM05D003751 ORTHO05D004765 1.6e-53 214.2 327 89.6
PGR102G2931 Punica granatum HOM05D003751 ORTHO05D004765 1.6e-53 214.2 327 88.1
Lsat_1_v5_gn_8_48161 Lactuca sativa HOM05D003751 ORTHO05D004765 2.7e-53 213.4 320 90.0
Lj2g0008638 Lotus japonicus HOM05D003751 ORTHO05D004765 7.7e-53 211.8 327 89.3
MD13G1065200 Malus domestica HOM05D003751 ORTHO05D004765 1.0e-52 211.5 332 88.0
Prupe.1G283000 Prunus persica HOM05D003751 ORTHO05D004765 1.0e-52 211.5 333 88.6
Hma1.2p1_0357F.1_g134490 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 1.3e-52 211.1 329 87.8
RcHm_v2.0_Chr4g0438711 Rosa chinensis HOM05D003751 ORTHO05D004765 1.3e-52 211.1 331 88.2
Cfa008900 Carpinus fangiana HOM05D003751 ORTHO05D004765 1.7e-52 210.7 325 90.5
CiPaw.05G127300 Carya illinoinensis HOM05D003751 ORTHO05D004765 1.7e-52 210.7 325 90.5
Nitab4.5_0000720g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 1.7e-52 210.7 332 88.0
Cpa.g.sc1.101 Carica papaya HOM05D003751 ORTHO05D004765 2.9e-52 209.9 322 89.4
Glyma.02G114800 Glycine max HOM05D003751 ORTHO05D004765 2.9e-52 209.9 306 93.8
Nitab4.5_0002832g0050 Nicotiana tabacum HOM05D003751 ORTHO05D004765 2.9e-52 209.9 326 89.0
VMungo1215G2610 Vigna mungo HOM05D003751 ORTHO05D004765 2.9e-52 209.9 306 93.5
Hund05853 Selenicereus undatus HOM05D003751 ORTHO05D004765 3.8e-52 209.5 320 87.8
Solyc01g011040.3 Solanum lycopersicum HOM05D003751 ORTHO05D004765 3.8e-52 209.5 324 90.4
Sopen01g034040 Solanum pennellii HOM05D003751 ORTHO05D004765 3.8e-52 209.5 324 90.4
PGSC0003DMG400004190 Solanum tuberosum HOM05D003751 ORTHO05D004765 3.8e-52 209.5 324 90.4
TPR.G24438 Trifolium pratense HOM05D003751 ORTHO05D004765 5.0e-52 209.1 332 88.9
Psat2g128600 Pisum sativum HOM05D003751 ORTHO05D004765 8.6e-52 208.4 306 93.5
SGA_v2.0_scaffold36G14436 Striga asiatica HOM05D003751 ORTHO05D004765 8.6e-52 208.4 323 89.2
Actinidia33247 Actinidia chinensis HOM05D003751 ORTHO05D004765 1.5e-51 207.6 329 88.4
Medtr5g043800 Medicago truncatula HOM05D003751 ORTHO05D004765 1.5e-51 207.6 320 90.0
Actinidia12325 Actinidia chinensis HOM05D003751 ORTHO05D004765 1.9e-51 207.2 329 88.1
Phvul.002G081300 Phaseolus vulgaris HOM05D003751 ORTHO05D004765 1.9e-51 207.2 326 88.7
Sc11g0002320 Simmondsia chinensis HOM05D003751 ORTHO05D004765 1.9e-51 207.2 331 84.6
Ca_04940_v3 Cicer arietinum L. HOM05D003751 ORTHO05D004765 2.5e-51 206.8 319 90.3
FAN22G1318 Fragaria x ananassa HOM05D003751 ORTHO05D004765 2.5e-51 206.8 331 87.6
HanXRQChr08g0211521 Helianthus annuus HOM05D003751 ORTHO05D004765 2.5e-51 206.8 320 89.1
HanXRQChr12g0379561 Helianthus annuus HOM05D003751 ORTHO05D004765 2.5e-51 206.8 319 90.0
Nn4g23361 Nelumbo nucifera HOM05D003751 ORTHO05D004765 2.5e-51 206.8 319 89.0
Rhsim12G0134600 Rhododendron simsii HOM05D003751 ORTHO05D004765 2.5e-51 206.8 313 82.7
CAN.G541.15 Capsicum annuum HOM05D003751 ORTHO05D004765 3.3e-51 206.5 305 93.1
CiPaw.06G090700 Carya illinoinensis HOM05D003751 ORTHO05D004765 3.3e-51 206.5 328 88.4
FAN17G0137 Fragaria x ananassa HOM05D003751 ORTHO05D004765 3.3e-51 206.5 331 87.3
Lalb_Chr10g0098641 Lupinus albus HOM05D003751 ORTHO05D004765 3.3e-51 206.5 328 88.1
Potri.010G160700 Populus trichocarpa HOM05D003751 ORTHO05D004765 3.3e-51 206.5 327 87.2
TAR622G0005 Trochodendron aralioides HOM05D003751 ORTHO05D004765 3.3e-51 206.5 321 85.0
Ciclev10021138m.g Citrus clementina HOM05D003751 ORTHO05D004765 4.3e-51 206.1 322 90.1
Migut.E00057 Erythranthe guttata HOM05D003751 ORTHO05D004765 4.3e-51 206.1 323 88.9
Glyma.01G056300 Glycine max HOM05D003751 ORTHO05D004765 4.3e-51 206.1 306 93.1
Gohir.A07G069400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 7.3e-51 205.3 324 88.3
TWI79G0662 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 7.3e-51 205.3 321 89.7
Manes.05G108200 Manihot esculenta HOM05D003751 ORTHO05D004765 9.5e-51 204.9 322 87.9
SGA_v2.0_scaffold16G07765 Striga asiatica HOM05D003751 ORTHO05D004765 9.5e-51 204.9 323 89.2
CANSAT80G0608 Cannabis sativa HOM05D003751 ORTHO05D004765 1.2e-50 204.5 325 88.0
CANSAT80G1362 Cannabis sativa HOM05D003751 ORTHO05D004765 1.2e-50 204.5 325 88.0
ECA233G2546 Erigeron canadensis HOM05D003751 ORTHO05D004765 1.2e-50 204.5 325 88.3
Gorai.001G078000 Gossypium raimondii HOM05D003751 ORTHO05D004765 1.2e-50 204.5 324 88.0
Potri.008G093400 Populus trichocarpa HOM05D003751 ORTHO05D004765 1.2e-50 204.5 322 88.8
AUR62007943 Chenopodium quinoa HOM05D003751 ORTHO05D004765 1.6e-50 204.1 324 75.0
Eucgr.B03173 Eucalyptus grandis HOM05D003751 ORTHO05D004765 1.6e-50 204.1 311 91.0
COL.COLO4_36892 Corchorus olitorius HOM05D003751 ORTHO05D004765 2.1e-50 203.8 319 89.7
MD16G1063500 Malus domestica HOM05D003751 ORTHO05D004765 2.1e-50 203.8 333 87.1
Sabra08G0070200 Salix brachista HOM05D003751 ORTHO05D004765 2.8e-50 203.4 325 87.4
Sp2g24470 Schrenkiella parvula HOM05D003751 ORTHO05D004765 3.6e-50 203.0 323 89.5
Gohir.D07G073800 Gossypium hirsutum HOM05D003751 ORTHO05D004765 4.7e-50 202.6 321 88.5
CARHR274990 Cardamine hirsuta HOM05D003751 ORTHO05D004765 6.1e-50 202.2 321 90.0
THA.LOC104818332 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 8.0e-50 201.8 323 89.5
Gorai.008G196500 Gossypium raimondii HOM05D003751 ORTHO05D004765 1.0e-49 201.4 327 87.5
Gohir.A12G180500 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.4e-49 201.1 327 85.6
Manes.01G029800 Manihot esculenta HOM05D003751 ORTHO05D004765 1.4e-49 201.1 322 86.0
Thecc.03G096900 Theobroma cacao HOM05D003751 ORTHO05D004765 1.4e-49 201.1 324 88.9
Migut.L01211 Erythranthe guttata HOM05D003751 ORTHO05D004765 1.8e-49 200.7 322 88.5
PSO063G1864 Papaver somniferum HOM05D003751 ORTHO05D004765 1.8e-49 200.7 303 92.7
Thecc.02G335000 Theobroma cacao HOM05D003751 ORTHO05D004765 1.8e-49 200.7 325 86.5
AL8G37900 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 3.0e-49 199.9 331 86.7
BcaC06g33170 Brassica carinata HOM05D003751 ORTHO05D004765 3.0e-49 199.9 321 90.0
Hund14089 Selenicereus undatus HOM05D003751 ORTHO05D004765 3.0e-49 199.9 323 85.1
AT5G61240 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 4.0e-49 199.5 321 89.7
A03p46870 Brassica napus HOM05D003751 ORTHO05D004765 5.2e-49 199.1 321 90.0
Duzib205G0623 Durio zibethinus HOM05D003751 ORTHO05D004765 5.2e-49 199.1 324 86.4
BcaC04g23458 Brassica carinata HOM05D003751 ORTHO05D004765 6.8e-49 198.7 321 89.4
BcaC06g33219 Brassica carinata HOM05D003751 ORTHO05D004765 8.9e-49 198.4 321 89.7
C07p44920 Brassica napus HOM05D003751 ORTHO05D004765 8.9e-49 198.4 321 89.7
Thhalv10004587m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 8.9e-49 198.4 321 89.7
Nn3g17386 Nelumbo nucifera HOM05D003751 ORTHO05D004765 8.9e-49 198.4 319 88.1
THA.LOC104801343 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 2.0e-48 197.2 305 91.1
Carub.0008s2191 Capsella rubella HOM05D003751 ORTHO05D004765 2.6e-48 196.8 321 89.4
A09p07270 Brassica napus HOM05D003751 ORTHO05D004765 3.4e-48 196.4 321 89.4
Cc11_g12270 Coffea canephora HOM05D003751 ORTHO05D004765 5.7e-48 195.7 324 88.6
Actinidia19010 Actinidia chinensis HOM05D003751 ORTHO05D004765 7.5e-48 195.3 328 86.0
Aa31LG11G2120 Aethionema arabicum HOM05D003751 ORTHO05D004765 1.3e-47 194.5 335 86.3
Hma1.2p1_0322F.1_g124910 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 1.3e-47 194.5 329 86.3
C09p08130 Brassica napus HOM05D003751 ORTHO05D004765 1.7e-47 194.1 321 89.1
ClCG05G023830 Citrullus lanatus HOM05D003751 ORTHO05D004765 1.7e-47 194.1 104 87.5
Duzib251G0914 Durio zibethinus HOM05D003751 ORTHO05D004765 1.7e-47 194.1 318 88.1
MSTRG.7761 Avicennia marina HOM05D003751 ORTHO05D004765 2.9e-47 193.4 322 87.9
MELO3C012139.2 Cucumis melo HOM05D003751 ORTHO05D004765 2.9e-47 193.4 104 87.5
COL.COLO4_27919 Corchorus olitorius HOM05D003751 ORTHO05D004765 4.9e-47 192.6 315 87.0
Dinv34089 Davidia involucrata HOM05D003751 ORTHO05D004765 4.9e-47 192.6 297 92.6
SalBow2G2522 Salvia bowleyana HOM05D003751 ORTHO05D004765 4.9e-47 192.6 343 83.4
BraA03t13807Z Brassica rapa HOM05D003751 ORTHO05D004765 6.4e-47 192.2 330 76.1
AUR62003123 Chenopodium quinoa HOM05D003751 ORTHO05D004765 6.4e-47 192.2 245 84.9
Haze_11929 Corylus avellana HOM05D003751 ORTHO05D004765 6.4e-47 192.2 370 65.4
TWI75G1095 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 8.3e-47 191.8 241 88.4
CDE07G1785 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 1.4e-46 191.0 317 87.7
CSS0038990 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 1.8e-46 190.7 330 77.9
Sabra10G0122300 Salix brachista HOM05D003751 ORTHO05D004765 1.8e-46 190.7 246 87.0
Peaxi162Scf00097g00610 Petunia axillaris HOM05D003751 ORTHO05D004765 3.2e-46 189.9 341 59.5
SalBow2G2568 Salvia bowleyana HOM05D003751 ORTHO05D004765 5.4e-46 189.1 343 75.5
CsaV3_5G025510 Cucumis sativus L. HOM05D003751 ORTHO05D004765 9.2e-46 188.3 331 85.8
BolC7t45015H Brassica oleracea HOM05D003751 ORTHO05D004765 1.2e-45 188.0 337 73.0
vmacro01326 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 4.6e-45 186.0 348 63.8
MELO3C002928.2 Cucumis melo HOM05D003751 ORTHO05D004765 7.8e-45 185.3 331 85.5
SEGI_02286 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 7.8e-45 185.3 306 88.2
Peaxi162Scf00314g00122 Petunia axillaris HOM05D003751 ORTHO05D004765 1.0e-44 184.9 296 90.2
BraA09t36376Z Brassica rapa HOM05D003751 ORTHO05D004765 3.0e-44 183.3 340 71.5
THA.LOC104824065 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 3.0e-44 183.3 325 84.0
Gohir.D02G128600 Gossypium hirsutum HOM05D003751 ORTHO05D004765 8.6e-44 181.8 324 82.7
Gorai.005G144300 Gossypium raimondii HOM05D003751 ORTHO05D004765 8.6e-44 181.8 324 82.7
ClCG09G022210 Citrullus lanatus HOM05D003751 ORTHO05D004765 1.1e-43 181.4 335 71.0
MSTRG.738 Avicennia marina HOM05D003751 ORTHO05D004765 2.1e-42 177.2 322 83.9
FvH4_4g30420 Fragaria vesca HOM05D003751 ORTHO05D004765 2.8e-42 176.8 324 85.5
Gohir.D12G183125 Gossypium hirsutum HOM05D003751 ORTHO05D004765 6.2e-42 175.6 327 78.3
Gohir.D12G183200 Gossypium hirsutum HOM05D003751 ORTHO05D004765 6.2e-42 175.6 327 78.3
Aqoxy3G03571 Aquilegia oxysepala HOM05D003751 ORTHO05D004765 1.4e-41 174.5 319 85.9
AL1G25740 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 1.8e-41 174.1 328 81.4
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 3.1e-41 173.3 228 90.8
SHI26375 Sapria himalayana HOM05D003751 ORTHO05D004765 3.1e-41 173.3 243 67.5
Sp1g12050 Schrenkiella parvula HOM05D003751 ORTHO05D004765 4.0e-41 172.9 307 84.7
PSO384G1483 Papaver somniferum HOM05D003751 ORTHO05D004765 5.2e-41 172.6 303 89.1
QL03p070738 Quercus lobata HOM05D003751 ORTHO05D004765 2.0e-40 170.6 102 81.4
ATR0064G031 Amborella trichopoda HOM05D003751 ORTHO05D004765 5.8e-40 169.1 92 85.9
HPP92_007743 Vanilla planifolia HOM05D003751 ORTHO05D004765 5.8e-40 169.1 92 85.9
Dinv38780 Davidia involucrata HOM05D003751 ORTHO05D004765 9.8e-40 168.3 105 78.1
Thhalv10008166m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 9.8e-40 168.3 307 86.0
DCAR_005254 Daucus carota HOM05D003751 ORTHO05D004765 1.3e-39 167.9 96 85.4
DCAR_016919 Daucus carota HOM05D003751 ORTHO05D004765 1.3e-39 167.9 96 85.4
AT1G13910 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 1.7e-39 167.5 325 81.5
FAN07G2601 Fragaria x ananassa HOM05D003751 ORTHO05D004765 1.7e-39 167.5 105 78.1
vmacro16373 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 3.7e-39 166.4 97 83.5
vmacro23251 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 3.7e-39 166.4 97 83.5
SalBow2G0317 Salvia bowleyana HOM05D003751 ORTHO05D004765 4.9e-39 166.0 283 74.9
CSS0000444 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 8.3e-39 165.2 328 68.0
FAN12G0947 Fragaria x ananassa HOM05D003751 ORTHO05D004765 1.4e-38 164.5 105 78.1
DCAR_007183 Daucus carota HOM05D003751 ORTHO05D004765 4.1e-38 162.9 339 79.6
CDE04G0854 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 5.4e-38 162.5 92 81.5
Cpa.g.sc94.5 Carica papaya HOM05D003751 ORTHO05D004765 2.7e-37 160.2 319 52.4
Carub.0001s1361 Capsella rubella HOM05D003751 ORTHO05D004765 4.6e-37 159.5 332 80.4
MBI16_g16360_MAGBIO Magnolia biondii HOM05D003751 ORTHO05D004765 6.0e-37 159.1 92 81.5
Zm00001eb008460 Zea mays HOM05D003751 ORTHO05D004765 6.0e-37 159.1 104 76.0
Os03g0211900 Oryza sativa ssp. japonica HOM05D003751 ORTHO05D004765 1.3e-36 157.9 100 80.0
Aa31LG1G1100 Aethionema arabicum HOM05D002953 ORTHO05D003249 3.6e-34 149.8 248 77.8
Hund25193 Selenicereus undatus HOM05D003751 ORTHO05D004765 2.1e-29 134.0 73 84.9
CARHR014280 Cardamine hirsuta HOM05D003751 ORTHO05D004765 5.1e-28 129.4 101 61.4
AagrBONN_evm.TU.Sc2ySwM_228.5257 Anthoceros agrestis HOM05D003751 ORTHO05D004765 4.3e-27 126.3 326 74.5
SMO307G0068 Selaginella moellendorffii HOM05D003751 ORTHO05D004765 8.1e-26 122.1 304 77.3
Oeu031422.1 Olea europaea HOM05D003751 ORTHO05D004765 6.8e-25 119.0 75 77.3
Actinidia28633 Actinidia chinensis HOM05D003751 ORTHO05D004765 9.2e-22 108.6 276 78.6
Nitab4.5_0004304g0080 Nicotiana tabacum HOM05D003751 ORTHO05D004765 7.3e-19 99.0 73 67.1
Nitab4.5_0017073g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 9.6e-19 98.6 65 73.8
SMO239G0097 Selaginella moellendorffii HOM05D003751 ORTHO05D011646 8.9e-17 92.0 64 60.9
Sopen05g021560 Solanum pennellii HOM05D003751 ORTHO05D004765 2.0e-16 90.9 50 78.0
SMO239G0021 Selaginella moellendorffii HOM05D003751 ORTHO05D011646 1.7e-15 87.8 64 59.4
Dinv16710 Davidia involucrata HOM05D003751 ORTHO05D004765 1.4e-14 84.7 244 69.7
CSS0008157 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 5.4e-14 82.8 118 84.7
SEGI_40768 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 1.2e-13 81.6 62 61.3
Gohir.A03G103400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 2.1e-13 80.9 258 84.9
RcHm_v2.0_Chr3g0459551 Rosa chinensis HOM05D003751 ORTHO05D004765 7.8e-13 79.0 48 83.3
Sopen05g021540 Solanum pennellii HOM05D003751 ORTHO05D004765 6.6e-12 75.9 43 79.1
Lj3A1031T31 Lonicera japonica HOM05D003751 ORTHO05D004765 1.5e-11 74.7 118 48.3
BolC2t12198H Brassica oleracea HOM05D003751 ORTHO05D017703 1.5e-08 64.7 34 91.2
CAN.G607.6 Capsicum annuum HOM05D003751 ORTHO05D024790 3.4e-08 63.5 41 68.3
C02p61470 Brassica napus HOM05D003751 ORTHO05D017703 1.3e-07 61.6 34 85.3
Sopen01g022300 Solanum pennellii HOM05D003751 ORTHO05D004765 1.3e-07 61.6 40 72.5
Gohir.D13G128551 Gossypium hirsutum HOM05D003751 ORTHO05D024790 6.4e-07 59.3 41 68.3
BraA02t09094Z Brassica rapa HOM05D003751 ORTHO05D004765 1.1e-06 58.5 26 100.0
BcaB06g25490 Brassica carinata HOM05D000570 ORTHO05D001174 5.4e-06 56.2 104 35.6
Gorai.013G144600 Gossypium raimondii HOM05D003751 ORTHO05D024790 5.4e-06 56.2 41 65.9


User provided reference genes

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