Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0016770 Sechium edule HOM05D001846 ORTHO05D005785 5.9e-229 797.3 455 100.0
ClCG02G023130 Citrullus lanatus HOM05D001846 ORTHO05D005785 5.3e-177 624.8 467 80.3
CsaV3_6G039320 Cucumis sativus L. HOM05D001846 ORTHO05D005785 6.9e-161 571.2 479 74.7
MELO3C014586.2 Cucumis melo HOM05D001846 ORTHO05D005785 9.7e-155 550.8 475 74.9
QL01p004435 Quercus lobata HOM05D001846 ORTHO05D005785 2.1e-88 330.5 514 44.7
QL01p004534 Quercus lobata HOM05D001846 ORTHO05D005785 2.7e-88 330.1 514 44.9
Atru.chr3.2697 Acer truncatum HOM05D001846 ORTHO05D005785 5.2e-84 315.8 514 43.6
Cpa.g.sc84.42 Carica papaya HOM05D001846 ORTHO05D005785 3.2e-81 306.6 496 43.1
TWI60G1588 Tripterygium wilfordii HOM05D001846 ORTHO05D005785 4.2e-81 306.2 512 43.9
Cfa009785 Carpinus fangiana HOM05D001846 ORTHO05D005785 3.0e-79 300.1 513 44.8
Duzib150G0388 Durio zibethinus HOM05D001846 ORTHO05D005785 3.3e-78 296.6 376 50.5
TAR369G0438 Trochodendron aralioides HOM05D001846 ORTHO05D005785 4.3e-78 296.2 500 42.8
Haze_23151 Corylus avellana HOM05D001846 ORTHO05D005785 1.1e-76 291.6 507 46.9
CiPaw.13G159200 Carya illinoinensis HOM05D001846 ORTHO05D005785 1.4e-76 291.2 503 41.4
Thecc.09G235700 Theobroma cacao HOM05D001846 ORTHO05D005785 2.4e-76 290.4 378 49.2
Thecc.09G236100 Theobroma cacao HOM05D001846 ORTHO05D005785 2.4e-76 290.4 378 49.2
Manes.06G163200 Manihot esculenta HOM05D001846 ORTHO05D005785 7.6e-75 285.4 507 40.6
Actinidia06915 Actinidia chinensis HOM05D001846 ORTHO05D005785 1.3e-74 284.6 444 44.8
TAR369G0720 Trochodendron aralioides HOM05D001846 ORTHO05D005785 2.2e-74 283.9 500 45.8
CANSAT54G0460 Cannabis sativa HOM05D001846 ORTHO05D005785 1.6e-72 277.7 474 42.6
AUR62019315 Chenopodium quinoa HOM05D001846 ORTHO05D005785 1.6e-72 277.7 377 49.1
Sabra09G0038200 Salix brachista HOM05D001846 ORTHO05D005785 7.8e-72 275.4 514 40.7
AUR62000135 Chenopodium quinoa HOM05D001846 ORTHO05D005785 1.0e-71 275.0 378 48.7
Dinv36247 Davidia involucrata HOM05D001846 ORTHO05D005785 1.7e-71 274.2 520 40.2
Ciclev10014939m.g Citrus clementina HOM05D001846 ORTHO05D005785 5.1e-71 272.7 455 43.7
CiPaw.14G118000 Carya illinoinensis HOM05D001846 ORTHO05D005785 6.6e-71 272.3 391 46.5
FAN16G0902 Fragaria x ananassa HOM05D001846 ORTHO05D005785 3.3e-70 270.0 539 39.3
Glyma.11G093300 Glycine max HOM05D001846 ORTHO05D005785 1.3e-69 268.1 446 41.7
Glyma.12G019500 Glycine max HOM05D001846 ORTHO05D005785 2.1e-69 267.3 444 42.1
FAN21G3148 Fragaria x ananassa HOM05D001846 ORTHO05D005785 3.6e-69 266.5 513 41.1
Eucgr.J00759 Eucalyptus grandis HOM05D001846 ORTHO05D005785 4.8e-69 266.2 510 38.6
GSVIVG01025241001 Vitis vinifera HOM05D001846 ORTHO05D005785 4.8e-69 266.2 496 39.1
Sabra16G0155900 Salix brachista HOM05D001846 ORTHO05D005785 1.1e-68 265.0 501 38.9
Manes.14G003700 Manihot esculenta HOM05D001846 ORTHO05D005785 1.4e-68 264.6 507 38.9
Prupe.4G251400 Prunus persica HOM05D001846 ORTHO05D005785 1.4e-68 264.6 513 40.5
Lj3g0017471 Lotus japonicus HOM05D001846 ORTHO05D005785 2.4e-68 263.8 482 40.9
FvH4_3g28690 Fragaria vesca HOM05D001846 ORTHO05D005785 3.1e-68 263.5 510 40.6
MD11G1191400 Malus domestica HOM05D001846 ORTHO05D005785 4.0e-68 263.1 513 40.2
Dinv22169 Davidia involucrata HOM05D001846 ORTHO05D005785 6.9e-68 262.3 359 46.2
Solyc11g065630.3 Solanum lycopersicum HOM05D001846 ORTHO05D005785 9.0e-68 261.9 467 42.8
Hma1.2p1_1313F.1_g274970 Hydrangea macrophylla HOM05D001846 ORTHO05D005785 2.6e-67 260.4 513 39.8
VMungo1127G1936 Vigna mungo HOM05D001846 ORTHO05D005785 3.4e-67 260.0 366 46.4
Gorai.006G127900 Gossypium raimondii HOM05D001846 ORTHO05D005785 7.6e-67 258.8 460 44.8
Gohir.D09G110300 Gossypium hirsutum HOM05D001846 ORTHO05D005785 9.9e-67 258.5 459 42.7
Phvul.011G021900 Phaseolus vulgaris HOM05D001846 ORTHO05D005785 1.3e-66 258.1 494 39.5
PGR119G1478 Punica granatum HOM05D001846 ORTHO05D005785 1.3e-66 258.1 525 39.6
Ah.06g194060 Amaranthus hybridus HOM05D001846 ORTHO05D005785 1.4e-65 254.6 373 46.6
Potri.009G052400 Populus trichocarpa HOM05D001846 ORTHO05D005785 5.4e-65 252.7 459 40.5
Sopen11g025350 Solanum pennellii HOM05D001846 ORTHO05D005785 5.4e-65 252.7 475 40.8
Potri.001G256700 Populus trichocarpa HOM05D001846 ORTHO05D005785 7.1e-65 252.3 507 38.1
EL10Ac4g10235 Beta vulgaris HOM05D001846 ORTHO05D005785 1.6e-64 251.1 500 43.0
Nn7g36246 Nelumbo nucifera HOM05D001846 ORTHO05D005785 1.6e-64 251.1 395 44.6
Nitab4.5_0002741g0070 Nicotiana tabacum HOM05D001846 ORTHO05D005785 6.7e-63 245.7 485 42.5
FAN11G2083 Fragaria x ananassa HOM05D001846 ORTHO05D005785 1.5e-62 244.6 536 38.1
Cc01_g04530 Coffea canephora HOM05D001846 ORTHO05D005785 1.9e-62 244.2 402 41.0
Sc16g0011440 Simmondsia chinensis HOM05D001846 ORTHO05D005785 9.6e-62 241.9 491 37.5
Lsat_1_v5_gn_6_25301 Lactuca sativa HOM05D001846 ORTHO05D005785 1.8e-60 237.7 382 39.8
DCAR_023761 Daucus carota HOM05D001846 ORTHO05D005785 2.4e-60 237.3 369 44.7
Aqoxy2G00165 Aquilegia oxysepala HOM05D001846 ORTHO05D005785 1.2e-59 235.0 519 40.8
CAN.G71.16 Capsicum annuum HOM05D001846 ORTHO05D005785 1.5e-59 234.6 481 38.9
FAN25G3740 Fragaria x ananassa HOM05D001846 ORTHO05D005785 3.4e-59 233.4 465 38.9
Gohir.D13G220500 Gossypium hirsutum HOM05D001846 ORTHO05D005785 3.4e-59 233.4 447 38.9
RcHm_v2.0_Chr5g0052391 Rosa chinensis HOM05D001846 ORTHO05D005785 7.6e-59 232.3 509 37.5
Medtr4g077160 Medicago truncatula HOM05D001846 ORTHO05D005785 2.9e-58 230.3 490 39.0
PSO700G0220 Papaver somniferum HOM05D001846 ORTHO05D005785 1.9e-57 227.6 471 38.6
Duzib168G1640 Durio zibethinus HOM05D001846 ORTHO05D005785 9.3e-57 225.3 468 37.4
MBI04_g43760_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 1.2e-56 224.9 373 42.6
Ca_18965_v3 Cicer arietinum L. HOM05D001846 ORTHO05D005785 7.9e-56 222.2 410 40.7
Gorai.013G251400 Gossypium raimondii HOM05D001846 ORTHO05D005785 1.8e-55 221.1 490 36.9
SGA_v2.0_scaffold8G04581 Striga asiatica HOM05D001846 ORTHO05D005785 3.0e-55 220.3 325 46.5
Actinidia16341 Actinidia chinensis HOM05D001846 ORTHO05D005785 3.9e-55 219.9 479 37.4
ECA233G5307 Erigeron canadensis HOM05D001846 ORTHO05D005785 5.1e-55 219.5 376 41.2
arahy.Tifrunner.gnm1.ann1.8PYD8T Arachis hypogaea HOM05D001846 ORTHO05D005785 3.3e-54 216.9 406 39.7
arahy.Tifrunner.gnm1.ann1.563I02 Arachis hypogaea HOM05D001846 ORTHO05D005785 5.6e-54 216.1 461 41.0
Carub.0001s4028 Capsella rubella HOM05D001846 ORTHO05D005785 9.6e-54 215.3 451 41.5
Psat7g170880 Pisum sativum HOM05D001846 ORTHO05D005785 9.6e-54 215.3 404 40.6
MD03G1173500 Malus domestica HOM05D001846 ORTHO05D005785 2.8e-53 213.8 515 37.5
FAN25G3220 Fragaria x ananassa HOM05D001846 ORTHO05D005785 4.8e-53 213.0 311 49.5
PSO170G6025 Papaver somniferum HOM05D001846 ORTHO05D005785 8.2e-53 212.2 402 41.5
Hund22024 Selenicereus undatus HOM05D001846 ORTHO05D005785 8.2e-53 212.2 361 42.1
Lalb_Chr19g0139851 Lupinus albus HOM05D001846 ORTHO05D005785 1.1e-52 211.8 433 37.9
Lj1A326G19 Lonicera japonica HOM05D001846 ORTHO05D005785 6.9e-52 209.1 389 40.1
Lj3g0008415 Lotus japonicus HOM05D001846 ORTHO05D005785 2.0e-51 207.6 413 38.3
Lj3g0026618 Lotus japonicus HOM05D001846 ORTHO05D005785 2.0e-51 207.6 413 38.3
AT1G51405 Arabidopsis thaliana HOM05D001846 ORTHO05D005785 7.6e-51 205.7 448 42.0
COL.COLO4_06126 Corchorus olitorius HOM05D001846 ORTHO05D005785 3.8e-50 203.4 254 52.4
THA.LOC104817913 Tarenaya hassleriana HOM05D001846 ORTHO05D005785 3.8e-50 203.4 479 35.9
HanXRQChr13g0401091 Helianthus annuus HOM05D001846 ORTHO05D005785 4.2e-49 199.9 406 37.7
CDE05G0547 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 1.2e-48 198.4 395 40.0
Thhalv10011423m.g Eutrema salsugineum HOM05D001846 ORTHO05D005785 3.5e-48 196.8 446 39.7
FAN25G3801 Fragaria x ananassa HOM05D001846 ORTHO05D005785 3.5e-48 196.8 472 36.0
MSTRG.17597 Avicennia marina HOM05D001846 ORTHO05D005785 4.3e-46 189.9 403 39.2
Migut.D00610 Erythranthe guttata HOM05D001846 ORTHO05D005785 2.2e-45 187.6 310 44.2
Sp1g38080 Schrenkiella parvula HOM05D001846 ORTHO05D005785 2.8e-45 187.2 455 37.8
MSTRG.12465 Avicennia marina HOM05D001846 ORTHO05D005785 4.8e-45 186.4 373 39.1
THA.LOC104811173 Tarenaya hassleriana HOM05D001846 ORTHO05D005785 1.4e-44 184.9 359 37.0
Oeu026419.1 Olea europaea HOM05D001846 ORTHO05D005785 2.4e-44 184.1 387 38.0
Aa31LG10G3580 Aethionema arabicum HOM05D000089 ORTHO05D005785 2.6e-43 180.6 441 38.5
SalBow1G1572 Salvia bowleyana HOM05D001846 ORTHO05D005785 1.7e-42 177.9 346 37.6
HanXRQChr02g0051491 Helianthus annuus HOM05D001846 ORTHO05D005785 3.8e-42 176.8 368 35.9
CARHR041560 Cardamine hirsuta HOM05D001846 ORTHO05D005785 2.5e-41 174.1 449 35.9
BraA06t23456Z Brassica rapa HOM05D001846 ORTHO05D005785 1.2e-40 171.8 403 34.5
Peaxi162Scf00004g02629 Petunia axillaris HOM05D001846 ORTHO05D005785 6.1e-40 169.5 507 34.3
Oeu016678.1 Olea europaea HOM05D001846 ORTHO05D005785 1.0e-39 168.7 285 41.1
Nitab4.5_0007154g0020 Nicotiana tabacum HOM05D001846 ORTHO05D005785 1.8e-39 167.9 486 36.8
C06p06570 Brassica napus HOM05D001846 ORTHO05D005785 1.1e-38 165.2 405 37.5
AL1G59260 Arabidopsis lyrata HOM05D001846 ORTHO05D005785 5.7e-38 162.9 437 39.4
BcaB07g33587 Brassica carinata HOM05D001846 ORTHO05D005785 5.7e-38 162.9 410 37.8
vmacro04149 Vaccinium macrocarpon HOM05D001846 ORTHO05D005785 3.1e-36 157.1 372 33.9
A06p02500 Brassica napus HOM05D001846 ORTHO05D005785 9.1e-36 155.6 405 37.8
BolC6t35770H Brassica oleracea HOM05D001846 ORTHO05D005785 9.1e-36 155.6 405 36.5
SEGI_01920 Sequoiadendron giganteum HOM05D001846 ORTHO05D005785 9.1e-36 155.6 449 31.2
BcaC08g43310 Brassica carinata HOM05D001846 ORTHO05D005785 1.2e-35 155.2 405 36.3
BraA08t32338Z Brassica rapa HOM05D001846 ORTHO05D005785 1.0e-34 152.1 376 35.6
A08p03060 Brassica napus HOM05D001846 ORTHO05D005785 4.2e-33 146.7 376 35.6
C03p89760 Brassica napus HOM05D001846 ORTHO05D005785 2.1e-32 144.4 374 34.5
ATR0332G095 Amborella trichopoda HOM05D001846 ORTHO05D005785 2.7e-32 144.1 377 31.6
BcaC01g01249 Brassica carinata HOM05D001846 ORTHO05D005785 3.6e-32 143.7 375 34.4
MSTRG.18433 Avicennia marina HOM05D001846 ORTHO05D005785 7.9e-32 142.5 320 36.6
BolC3t21298H Brassica oleracea HOM05D001846 ORTHO05D005785 1.4e-31 141.7 375 34.1
BcaB04g17234 Brassica carinata HOM05D001846 ORTHO05D005785 2.3e-31 141.0 369 33.9
Gohir.A09G113700 Gossypium hirsutum HOM05D001846 ORTHO05D005785 3.0e-31 140.6 181 49.7
CDE05G3609 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 8.8e-31 139.0 291 40.2
Zm00001eb008800 Zea mays HOM05D001846 ORTHO05D005785 1.1e-28 132.1 408 32.4
Rhsim13G0220400 Rhododendron simsii HOM05D001846 ORTHO05D005785 7.7e-27 125.9 498 27.9
Zm00001eb400050 Zea mays HOM05D001846 ORTHO05D005785 1.0e-26 125.6 522 29.3
MBI04_g45701_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 8.0e-24 115.9 368 31.8
Gohir.A09G113600 Gossypium hirsutum HOM05D001846 ORTHO05D005785 5.7e-22 109.8 217 43.3
PGSC0003DMG400010305 Solanum tuberosum HOM05D001846 ORTHO05D005785 4.8e-21 106.7 207 46.9
Nn2g13769 Nelumbo nucifera HOM05D001846 ORTHO05D005785 9.1e-20 102.4 259 35.9
Nn6g35051 Nelumbo nucifera HOM05D001846 ORTHO05D005785 9.1e-20 102.4 122 45.9
Actinidia26798 Actinidia chinensis HOM05D001846 ORTHO05D005785 1.2e-19 102.1 241 34.4
SGA_v2.0_scaffold247G44890 Striga asiatica HOM05D001846 ORTHO05D005785 2.6e-14 84.3 67 58.2
HPP92_007908 Vanilla planifolia HOM05D001846 ORTHO05D005785 4.4e-14 83.6 270 29.6
CDE05G1816 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 7.5e-14 82.8 58 65.5
MSTRG.21370 Avicennia marina HOM05D001846 ORTHO05D005785 3.7e-13 80.5 62 59.7
Glyma.06G203350 Glycine max HOM05D001846 ORTHO05D005785 4.8e-13 80.1 143 42.0
QL02p066233 Quercus lobata HOM05D001846 ORTHO05D005785 3.5e-11 73.9 110 45.5
unitig_62.g23880 Utricularia gibba HOM05D001846 ORTHO05D005785 1.0e-10 72.4 118 39.8
Os03g0216900 Oryza sativa ssp. japonica HOM05D001846 ORTHO05D005785 8.8e-07 59.3 51 52.9
Zm00001eb393780 Zea mays HOM05D001846 ORTHO05D005785 2.0e-06 58.2 50 56.0
MBI04_g34435_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 7.5e-06 56.2 82 45.1


User provided reference genes

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