Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0016742 Sechium edule HOM05D007911 ORTHO05D009536 3.8e-299 1030.8 540 100.0
ClCG04G003660 Citrullus lanatus HOM05D007911 ORTHO05D009536 9.4e-165 584.3 560 62.0
CsaV3_4G027600 Cucumis sativus L. HOM05D007911 ORTHO05D009536 3.2e-141 506.1 544 56.8
MELO3C026340.2 Cucumis melo HOM05D007911 ORTHO05D009536 6.8e-139 498.4 560 55.5
Manes.08G052400 Manihot esculenta HOM05D007911 ORTHO05D009536 1.1e-24 119.0 653 25.4
COL.COLO4_33204 Corchorus olitorius HOM05D007911 ORTHO05D009536 5.5e-24 116.7 153 44.4
Duzib093G1996 Durio zibethinus HOM05D007911 ORTHO05D009536 3.4e-21 107.5 105 52.4
Haze_19798 Corylus avellana HOM05D007911 ORTHO05D009536 5.7e-21 106.7 218 35.3
Thecc.05G151800 Theobroma cacao HOM05D007911 ORTHO05D009536 5.7e-21 106.7 121 48.8
Gohir.D01G119650 Gossypium hirsutum HOM05D007911 ORTHO05D009536 9.8e-21 105.9 106 50.9
CiPaw.09G040100 Carya illinoinensis HOM05D007911 ORTHO05D009536 1.7e-20 105.1 732 25.3
Gorai.002G146100 Gossypium raimondii HOM05D007911 ORTHO05D009536 1.7e-20 105.1 122 46.7
QL07p003623 Quercus lobata HOM05D007911 ORTHO05D009536 2.2e-20 104.8 280 31.1
Cfa016782 Carpinus fangiana HOM05D007911 ORTHO05D009536 8.3e-20 102.8 417 29.0
Sabra06G0032200 Salix brachista HOM05D007911 ORTHO05D009536 2.4e-19 101.3 709 24.4
TWI53G0905 Tripterygium wilfordii HOM05D007911 ORTHO05D009536 3.1e-19 100.9 582 25.1
Ciclev10006879m.g Citrus clementina HOM05D007911 ORTHO05D009536 5.4e-19 100.1 105 46.7
Eucgr.A02312 Eucalyptus grandis HOM05D007911 ORTHO05D009536 9.1e-19 99.4 582 23.9
Atru.chr12.1999 Acer truncatum HOM05D007911 ORTHO05D009536 1.2e-18 99.0 179 37.4
Gohir.A01G130811 Gossypium hirsutum HOM05D007911 ORTHO05D009536 1.2e-18 99.0 109 46.8
Atru.chr1.1239 Acer truncatum HOM05D007911 ORTHO05D009536 2.0e-18 98.2 95 52.6
Cpa.g.sc1210.2 Carica papaya HOM05D007911 ORTHO05D009536 2.7e-18 97.8 112 49.1
Potri.016G043300 Populus trichocarpa HOM05D007911 ORTHO05D009536 4.5e-18 97.1 744 23.9
Potri.006G046700 Populus trichocarpa HOM05D007911 ORTHO05D009536 1.0e-17 95.9 675 25.2
TAR636G2018 Trochodendron aralioides HOM05D007911 ORTHO05D009536 3.8e-17 94.0 161 38.5
Duzib106G0073 Durio zibethinus HOM05D007911 ORTHO05D009536 5.0e-17 93.6 96 52.1
PGR004G0024 Punica granatum HOM05D007911 ORTHO05D009536 5.0e-17 93.6 188 33.5
Prupe.7G054000 Prunus persica HOM05D007911 ORTHO05D009536 8.6e-17 92.8 277 31.8
CANSAT80G1261 Cannabis sativa HOM05D007911 ORTHO05D009536 5.5e-16 90.1 105 45.7
TWI77G0280 Tripterygium wilfordii HOM05D007911 ORTHO05D009536 7.2e-16 89.7 571 23.6
RcHm_v2.0_Chr3g0483481 Rosa chinensis HOM05D020102 ORTHO05D009536 2.1e-15 88.2 105 43.8
TPR.G18258 Trifolium pratense HOM05D007911 ORTHO05D009536 2.1e-15 88.2 112 42.0
arahy.Tifrunner.gnm1.ann1.BL1IZ1 Arachis hypogaea HOM05D007911 ORTHO05D009536 1.4e-14 85.5 105 43.8
Ca_08429_v3 Cicer arietinum L. HOM05D007911 ORTHO05D009536 4.0e-14 84.0 105 40.0
CANSAT80G2434 Cannabis sativa HOM05D007911 ORTHO05D009536 6.8e-14 83.2 280 31.4
Psat3g074440 Pisum sativum HOM05D007911 ORTHO05D009536 6.8e-14 83.2 92 45.7
vmacro21970 Vaccinium macrocarpon HOM05D007911 ORTHO05D009536 6.8e-14 83.2 318 28.9
arahy.Tifrunner.gnm1.ann1.18RKPD Arachis hypogaea HOM05D007911 ORTHO05D009536 8.9e-14 82.8 105 42.9
Hma1.2p1_0005F.1_g004500 Hydrangea macrophylla HOM05D007911 ORTHO05D009536 1.2e-13 82.4 114 44.7
AUR62026093 Chenopodium quinoa HOM05D021336 ORTHO05D009536 1.5e-13 82.0 108 39.8
Rhsim03G0028700 Rhododendron simsii HOM05D007911 ORTHO05D009536 1.5e-13 82.0 203 33.0
Nn2g15134 Nelumbo nucifera HOM05D007911 ORTHO05D009536 2.6e-13 81.3 130 35.4
arahy.Tifrunner.gnm1.ann1.XA9LH2 Arachis hypogaea HOM05D007911 ORTHO05D009536 4.4e-13 80.5 107 44.9
Actinidia09304 Actinidia chinensis HOM05D007911 ORTHO05D009536 1.3e-12 79.0 236 30.5
Peaxi162Scf00130g00827 Petunia axillaris HOM05D017238 ORTHO05D009536 1.7e-12 78.6 105 41.9
Medtr7g091040 Medicago truncatula HOM05D007911 ORTHO05D009536 2.2e-12 78.2 110 40.9
Actinidia39204 Actinidia chinensis HOM05D007911 ORTHO05D009536 3.7e-12 77.4 179 38.0
AUR62024506 Chenopodium quinoa HOM05D021336 ORTHO05D009536 4.9e-12 77.0 570 23.0
CAN.G676.9 Capsicum annuum HOM05D017238 ORTHO05D009536 6.3e-12 76.6 103 44.7
Hund19135 Selenicereus undatus HOM05D021336 ORTHO05D009536 1.4e-11 75.5 132 36.4
Lalb_Chr25g0287291 Lupinus albus HOM05D007911 ORTHO05D009536 1.8e-11 75.1 108 39.8
CSS0030068 Camellia sinensis var. sinensis HOM05D007911 ORTHO05D009536 2.4e-11 74.7 565 24.6
Ah.04g151450 Amaranthus hybridus HOM05D021336 ORTHO05D009536 4.1e-11 73.9 99 38.4
Oeu035501.1 Olea europaea HOM05D007911 ORTHO05D009536 7.0e-11 73.2 97 41.2
FAN05G5247 Fragaria x ananassa HOM05D020102 ORTHO05D009536 2.7e-10 71.2 89 41.6
Nitab4.5_0001618g0290 Nicotiana tabacum HOM05D017238 ORTHO05D009536 2.7e-10 71.2 111 37.8
Lalb_Chr01g0017411 Lupinus albus HOM05D007911 ORTHO05D009536 3.5e-10 70.9 589 22.4
Lj1g0009156 Lotus japonicus HOM05D007911 ORTHO05D009536 5.9e-10 70.1 107 40.2
FAN09G4584 Fragaria x ananassa HOM05D020102 ORTHO05D009536 7.8e-10 69.7 89 41.6
Hund24682 Selenicereus undatus HOM05D007911 ORTHO05D009536 7.8e-10 69.7 117 35.9
EL10Ac3g07134 Beta vulgaris HOM05D021336 ORTHO05D009536 1.3e-09 68.9 240 26.2
Nitab4.5_0000826g0230 Nicotiana tabacum HOM05D017238 ORTHO05D009536 1.3e-09 68.9 119 35.3
MSTRG.6410 Avicennia marina HOM05D007911 ORTHO05D009536 1.7e-09 68.6 238 28.6
Solyc04g016290.3 Solanum lycopersicum HOM05D017238 ORTHO05D009536 8.6e-09 66.2 273 27.5
Glyma.03G133900 Glycine max HOM05D007911 ORTHO05D009536 1.1e-08 65.9 91 41.8
SGA_v2.0_scaffold105G30375 Striga asiatica HOM05D007911 ORTHO05D009536 1.1e-08 65.9 98 39.8
Medtr2g012890 Medicago truncatula HOM05D007911 ORTHO05D009536 1.9e-08 65.1 108 36.1
PSO339G2888 Papaver somniferum HOM05D007911 ORTHO05D009536 1.9e-08 65.1 109 35.8
Phvul.001G129400 Phaseolus vulgaris HOM05D007911 ORTHO05D009536 1.9e-08 65.1 581 23.1
Sopen04g008390 Solanum pennellii HOM05D017238 ORTHO05D009536 1.9e-08 65.1 269 27.1
FAN14G4000 Fragaria x ananassa HOM05D020102 ORTHO05D009536 2.5e-08 64.7 89 38.2
SGA_v2.0_scaffold69G23124 Striga asiatica HOM05D007911 ORTHO05D009536 2.5e-08 64.7 98 39.8
Aqoxy1G00297 Aquilegia oxysepala HOM05D007911 ORTHO05D009536 7.3e-08 63.2 119 34.5
VMungo1383G2470 Vigna mungo HOM05D007911 ORTHO05D009536 1.2e-07 62.4 590 23.6
VMungo0720G0307 Vigna mungo HOM05D007911 ORTHO05D009536 2.1e-07 61.6 94 38.3
FvH4_6g24470 Fragaria vesca HOM05D020102 ORTHO05D009536 6.1e-07 60.1 453 23.2
Glyma.19G136200 Glycine max HOM05D007911 ORTHO05D009536 1.4e-06 58.9 91 38.5
PSO384G4398 Papaver somniferum HOM05D007911 ORTHO05D009536 4.0e-06 57.4 109 35.8


User provided reference genes

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