Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0016660 Sechium edule HOM05D005134 ORTHO05D006548 2.4e-181 638.6 308 100.0
Sed0011924 Sechium edule HOM05D005134 ORTHO05D006548 1.7e-147 526.2 307 85.0
ClCG02G016990 Citrullus lanatus HOM05D005134 ORTHO05D006548 2.1e-145 519.2 327 78.3
MELO3C004420.2 Cucumis melo HOM05D005134 ORTHO05D006548 3.6e-145 518.5 308 81.8
CsaV3_2G003750 Cucumis sativus L. HOM05D005134 ORTHO05D006548 2.9e-134 482.3 374 66.6
CANSAT54G0719 Cannabis sativa HOM05D005134 ORTHO05D006548 1.5e-106 390.2 312 64.1
RcHm_v2.0_Chr3g0449951 Rosa chinensis HOM05D005134 ORTHO05D006548 8.1e-105 384.4 301 65.8
PGR004G2085 Punica granatum HOM05D005134 ORTHO05D006548 1.4e-104 383.6 321 61.1
Gohir.A13G168200 Gossypium hirsutum HOM05D005134 ORTHO05D006548 5.3e-104 381.7 312 63.5
Manes.09G148800 Manihot esculenta HOM05D005134 ORTHO05D006548 3.4e-103 379.0 306 62.7
Gohir.D13G173500 Gossypium hirsutum HOM05D005134 ORTHO05D006548 5.8e-103 378.3 312 62.5
Ciclev10001967m.g Citrus clementina HOM05D005134 ORTHO05D006548 7.6e-103 377.9 306 62.4
Thecc.05G272900 Theobroma cacao HOM05D005134 ORTHO05D006548 7.6e-103 377.9 312 62.8
Dinv14615 Davidia involucrata HOM05D005134 ORTHO05D006548 1.3e-102 377.1 316 61.7
Duzib177G0085 Durio zibethinus HOM05D005134 ORTHO05D006548 1.3e-102 377.1 312 62.2
TWI63G1834 Tripterygium wilfordii HOM05D005134 ORTHO05D006548 1.7e-102 376.7 226 78.3
CiPaw.08G117800 Carya illinoinensis HOM05D005134 ORTHO05D006548 4.9e-102 375.2 318 61.6
Nn1g02742 Nelumbo nucifera HOM05D005134 ORTHO05D006548 2.4e-101 372.9 319 61.8
TAR365G0228 Trochodendron aralioides HOM05D005134 ORTHO05D006548 5.4e-101 371.7 322 61.8
Cpa.g.sc162.33 Carica papaya HOM05D005134 ORTHO05D006548 1.2e-100 370.5 275 67.6
Prupe.6G348800 Prunus persica HOM05D005134 ORTHO05D006548 1.2e-100 370.5 304 63.5
Gorai.013G187000 Gossypium raimondii HOM05D005134 ORTHO05D006548 6.0e-100 368.2 300 63.0
QL03p031652 Quercus lobata HOM05D005134 ORTHO05D006548 6.0e-100 368.2 262 66.8
QL09p031144 Quercus lobata HOM05D005134 ORTHO05D006548 6.0e-100 368.2 262 66.8
MD12G1246100 Malus domestica HOM05D005134 ORTHO05D006548 1.8e-99 366.7 297 64.3
FvH4_6g02180 Fragaria vesca HOM05D005134 ORTHO05D006548 5.1e-99 365.2 292 64.4
FAN05G3609 Fragaria x ananassa HOM05D005134 ORTHO05D006548 1.5e-98 363.6 292 64.0
FAN14G0587 Fragaria x ananassa HOM05D005134 ORTHO05D006548 4.3e-98 362.1 299 62.5
Potri.013G045800 Populus trichocarpa HOM05D005134 ORTHO05D006548 2.1e-97 359.8 220 77.7
Potri.019G017900 Populus trichocarpa HOM05D005134 ORTHO05D006548 2.1e-97 359.8 315 59.7
THA.LOC104807079 Tarenaya hassleriana HOM05D005134 ORTHO05D006548 4.8e-97 358.6 243 72.4
Glyma.10G166800 Glycine max HOM05D005134 ORTHO05D006548 6.2e-97 358.2 242 71.1
VMungo0720G0573 Vigna mungo HOM05D005134 ORTHO05D006548 6.2e-97 358.2 225 76.0
GSVIVG01036192001 Vitis vinifera HOM05D005134 ORTHO05D006548 8.1e-97 357.8 315 58.4
MBI18_g13184_MAGBIO Magnolia biondii HOM05D005134 ORTHO05D006548 1.1e-96 357.5 220 77.7
Sabra13G0042100 Salix brachista HOM05D005134 ORTHO05D006548 1.4e-96 357.1 243 71.6
Lj5g0005697 Lotus japonicus HOM05D005134 ORTHO05D006548 1.8e-96 356.7 240 70.8
Actinidia04451 Actinidia chinensis HOM05D005134 ORTHO05D006548 4.0e-96 355.5 247 69.2
Eucgr.H04250 Eucalyptus grandis HOM05D005134 ORTHO05D006548 4.0e-96 355.5 285 63.9
Eucgr.H04279 Eucalyptus grandis HOM05D005134 ORTHO05D006548 5.3e-96 355.1 229 74.2
FAN05G5817 Fragaria x ananassa HOM05D005134 ORTHO05D006548 3.4e-95 352.4 292 62.3
Phvul.L001688 Phaseolus vulgaris HOM05D005134 ORTHO05D006548 3.4e-95 352.4 235 72.3
Manes.08G138000 Manihot esculenta HOM05D005134 ORTHO05D006548 4.5e-95 352.1 302 60.3
CSS0005455 Camellia sinensis var. sinensis HOM05D005134 ORTHO05D006548 5.8e-95 351.7 229 72.9
Sopen09g032960 Solanum pennellii HOM05D005134 ORTHO05D006548 1.7e-94 350.1 244 70.5
Aqoxy5G00231 Aquilegia oxysepala HOM05D005134 ORTHO05D006548 2.2e-94 349.7 230 72.2
Peaxi162Scf00409g00421 Petunia axillaris HOM05D005134 ORTHO05D006548 2.9e-94 349.4 232 73.3
arahy.Tifrunner.gnm1.ann1.MCCA8X Arachis hypogaea HOM05D005134 ORTHO05D006548 3.8e-94 349.0 260 67.7
Atru.chr6.1561 Acer truncatum HOM05D005134 ORTHO05D006548 6.4e-94 348.2 275 64.7
arahy.Tifrunner.gnm1.ann1.JQR6X4 Arachis hypogaea HOM05D005134 ORTHO05D006548 6.4e-94 348.2 260 67.3
Sc09g0004160 Simmondsia chinensis HOM05D005134 ORTHO05D006548 6.4e-94 348.2 296 60.8
PGSC0003DMG400017174 Solanum tuberosum HOM05D005134 ORTHO05D006548 1.4e-93 347.1 223 74.0
MSTRG.21911 Avicennia marina HOM05D005134 ORTHO05D006548 1.9e-93 346.7 224 75.4
CAN.G793.56 Capsicum annuum HOM05D005134 ORTHO05D006548 2.4e-93 346.3 231 70.1
Cc03_g05430 Coffea canephora HOM05D005134 ORTHO05D006548 2.4e-93 346.3 219 74.4
Lalb_Chr02g0149171 Lupinus albus HOM05D005134 ORTHO05D006548 3.2e-93 345.9 229 72.1
Nitab4.5_0011884g0010 Nicotiana tabacum HOM05D005134 ORTHO05D006548 3.2e-93 345.9 248 69.8
CDE02G0996 Ceratophyllum demersum HOM05D005134 ORTHO05D006548 5.5e-93 345.1 311 58.5
Nitab4.5_0000044g0220 Nicotiana tabacum HOM05D005134 ORTHO05D006548 5.5e-93 345.1 232 71.6
Rhsim04G0183700 Rhododendron simsii HOM05D005134 ORTHO05D006548 9.3e-93 344.4 229 71.6
AL3G53380 Arabidopsis lyrata HOM05D005134 ORTHO05D006548 7.9e-92 341.3 236 68.6
TPR.G32267 Trifolium pratense HOM05D005134 ORTHO05D006548 7.9e-92 341.3 225 72.0
TAR636G3303 Trochodendron aralioides HOM05D005134 ORTHO05D006548 7.9e-92 341.3 303 59.4
Medtr1g079925 Medicago truncatula HOM05D005134 ORTHO05D006548 1.0e-91 340.9 226 72.6
Aa31LG2G12350 Aethionema arabicum HOM05D005134 ORTHO05D006548 1.8e-91 340.1 218 71.6
CARHR110960 Cardamine hirsuta HOM05D005134 ORTHO05D006548 2.3e-91 339.7 227 70.0
SHI23170 Sapria himalayana HOM05D005134 ORTHO05D006548 5.1e-91 338.6 302 57.6
Glyma.20G222300 Glycine max HOM05D005134 ORTHO05D006548 1.1e-90 337.4 225 72.4
Ah.04g155980 Amaranthus hybridus HOM05D005134 ORTHO05D006548 2.5e-90 336.3 256 63.7
EL10Ac3g05020 Beta vulgaris HOM05D005134 ORTHO05D006548 4.3e-90 335.5 222 70.3
HanXRQChr03g0091791 Helianthus annuus HOM05D005134 ORTHO05D006548 5.6e-90 335.1 222 71.6
Lj3A700T11 Lonicera japonica HOM05D005134 ORTHO05D006548 5.6e-90 335.1 248 65.3
Hma1.2p1_1006F.1_g247010 Hydrangea macrophylla HOM05D005134 ORTHO05D006548 7.4e-90 334.7 247 66.0
Carub.0003s3480 Capsella rubella HOM05D005134 ORTHO05D006548 9.6e-90 334.3 228 69.7
HPP92_015212 Vanilla planifolia HOM05D005134 ORTHO05D006548 1.3e-89 334.0 223 72.2
AUR62002121 Chenopodium quinoa HOM05D005134 ORTHO05D006548 1.6e-89 333.6 263 62.0
FAN02G2775 Fragaria x ananassa HOM05D005134 ORTHO05D006548 2.1e-89 333.2 360 51.9
AUR62028240 Chenopodium quinoa HOM05D005134 ORTHO05D006548 2.8e-89 332.8 263 62.0
BcaB04g20137 Brassica carinata HOM05D005134 ORTHO05D006548 3.7e-89 332.4 215 73.0
Oeu028977.1 Olea europaea HOM05D005134 ORTHO05D006548 4.8e-89 332.0 218 72.5
COL.COLO4_15462 Corchorus olitorius HOM05D005134 ORTHO05D006548 6.2e-89 331.6 286 59.8
Migut.N00267 Erythranthe guttata HOM05D005134 ORTHO05D006548 6.2e-89 331.6 228 70.2
Thhalv10027851m.g Eutrema salsugineum HOM05D005134 ORTHO05D006548 8.2e-89 331.3 223 70.4
ECA240G2747 Erigeron canadensis HOM05D005134 ORTHO05D006548 1.1e-88 330.9 221 71.0
SpUn0001_1010 Schrenkiella parvula HOM05D005134 ORTHO05D006548 2.4e-88 329.7 222 70.7
Solyc09g090050.4 Solanum lycopersicum HOM05D005134 ORTHO05D006548 3.1e-88 329.3 190 78.4
Haze_04438 Corylus avellana HOM05D005134 ORTHO05D006548 4.0e-88 328.9 262 63.0
PSO173G0035 Papaver somniferum HOM05D005134 ORTHO05D006548 6.9e-88 328.2 229 70.3
Lsat_1_v5_gn_3_118860 Lactuca sativa HOM05D005134 ORTHO05D006548 9.0e-88 327.8 221 69.7
AT2G20410 Arabidopsis thaliana HOM05D005134 ORTHO05D006548 2.6e-87 326.2 238 66.0
C01p34370 Brassica napus HOM05D005134 ORTHO05D006548 2.6e-87 326.2 222 70.3
BolC1t03407H Brassica oleracea HOM05D005134 ORTHO05D006548 2.6e-87 326.2 222 70.3
HPP92_025481 Vanilla planifolia HOM05D005134 ORTHO05D006548 4.5e-87 325.5 215 70.2
PSO170G6910 Papaver somniferum HOM05D005134 ORTHO05D006548 5.8e-87 325.1 212 71.7
BcaC09g49624 Brassica carinata HOM05D005134 ORTHO05D006548 7.6e-87 324.7 222 69.8
SEGI_05528 Sequoiadendron giganteum HOM05D005134 ORTHO05D006548 7.6e-87 324.7 229 66.4
vmacro02444 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 1.0e-86 324.3 226 68.6
ATR0730G220 Amborella trichopoda HOM05D005134 ORTHO05D006548 1.3e-86 323.9 253 64.0
SalBow3G1367 Salvia bowleyana HOM05D005134 ORTHO05D006548 3.8e-86 322.4 220 70.0
Aqoxy2G03635 Aquilegia oxysepala HOM05D005134 ORTHO05D006548 8.4e-86 321.2 224 70.5
GSVIVG01027798001 Vitis vinifera HOM05D005134 ORTHO05D006548 1.1e-85 320.9 210 71.4
Zm00001eb210280 Zea mays HOM05D005134 ORTHO05D006548 1.1e-85 320.9 219 69.4
Hund03036 Selenicereus undatus HOM05D005134 ORTHO05D006548 1.9e-85 320.1 255 60.8
unitig_0.g910 Utricularia gibba HOM05D005134 ORTHO05D006548 1.9e-85 320.1 215 71.6
Actinidia34743 Actinidia chinensis HOM05D005134 ORTHO05D006548 2.7e-84 316.2 216 70.4
EL10Ac4g09067 Beta vulgaris HOM05D005134 ORTHO05D006548 3.5e-84 315.8 315 54.9
Hund06912 Selenicereus undatus HOM05D005134 ORTHO05D006548 2.4e-80 303.1 220 68.2
Eucgr.H04252 Eucalyptus grandis HOM05D005134 ORTHO05D006548 4.5e-79 298.9 278 57.2
Cfa006341 Carpinus fangiana HOM05D005617 ORTHO05D006548 3.0e-75 286.2 186 74.2
FAN09G4497 Fragaria x ananassa HOM05D005134 ORTHO05D006548 4.8e-73 278.9 198 68.7
vmacro08495 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 1.4e-72 277.3 393 42.2
Ca_10010_v3 Cicer arietinum L. HOM05D005134 ORTHO05D006548 2.4e-72 276.6 206 66.0
MD04G1229000 Malus domestica HOM05D005134 ORTHO05D006548 2.5e-69 266.5 329 47.1
GSVIVG01027796001 Vitis vinifera HOM05D005134 ORTHO05D006548 5.5e-69 265.4 207 61.8
Rhsim13G0009400 Rhododendron simsii HOM05D005134 ORTHO05D006548 1.6e-68 263.8 265 52.8
Mapoly0025s0138 Marchantia polymorpha HOM05D005134 ORTHO05D006548 1.0e-67 261.2 210 59.5
Ah.06g191930 Amaranthus hybridus HOM05D005134 ORTHO05D006548 2.3e-67 260.0 227 61.2
AUR62004857 Chenopodium quinoa HOM05D005134 ORTHO05D006548 2.0e-66 256.9 224 59.8
Eucgr.H04289 Eucalyptus grandis HOM05D005134 ORTHO05D006548 9.7e-66 254.6 232 59.1
SGA_v2.0_scaffold308G48086 Striga asiatica HOM05D005134 ORTHO05D006548 2.6e-58 229.9 129 77.5
Os03g0860000 Oryza sativa ssp. japonica HOM05D005134 ORTHO05D006548 9.7e-58 228.0 123 78.9
HPP92_015224 Vanilla planifolia HOM05D005134 ORTHO05D006548 1.3e-57 227.6 223 56.1
Actinidia01853 Actinidia chinensis HOM05D005134 ORTHO05D006548 1.1e-56 224.6 226 53.1
AUR62040940 Chenopodium quinoa HOM05D005134 ORTHO05D006548 2.4e-56 223.4 161 63.4
SMO367G0112 Selaginella moellendorffii HOM05D005134 ORTHO05D006548 5.9e-55 218.8 162 62.3
Eucgr.H04247 Eucalyptus grandis HOM05D005134 ORTHO05D006548 1.3e-54 217.6 127 75.6
Actinidia38945 Actinidia chinensis HOM05D005134 ORTHO05D006548 3.2e-53 213.0 136 72.8
DCAR_002321 Daucus carota HOM05D005134 ORTHO05D006548 2.7e-52 209.9 171 62.0
Dinv29871 Davidia involucrata HOM05D005134 ORTHO05D006548 4.2e-45 186.0 164 59.1
Psat6g143200 Pisum sativum HOM05D005134 ORTHO05D006548 2.3e-43 180.3 186 52.7
SEGI_11048 Sequoiadendron giganteum HOM05D005134 ORTHO05D006548 6.8e-43 178.7 165 55.2
AagrBONN_evm.TU.Sc2ySwM_344.1164 Anthoceros agrestis HOM05D005134 ORTHO05D006548 1.5e-42 177.6 125 60.0
Cre16.g655100 Chlamydomonas reinhardtii HOM05D005134 ORTHO05D006548 1.3e-38 164.5 186 42.5
vmacro02443 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 1.3e-33 147.9 86 73.3
Manes.15G040000 Manihot esculenta HOM05D005134 ORTHO05D006548 7.3e-29 132.1 90 65.6
Eucgr.H04286 Eucalyptus grandis HOM05D005134 ORTHO05D006548 1.6e-23 114.4 133 48.9
Duzib177G1154 Durio zibethinus HOM05D005134 ORTHO05D013855 1.3e-17 94.7 151 43.7
FAN14G5434 Fragaria x ananassa HOM05D005134 ORTHO05D006548 3.3e-13 80.1 143 43.4
RcHm_v2.0_Chr6g0274061 Rosa chinensis HOM05D005134 ORTHO05D006548 5.4e-08 62.8 65 60.0
FAN06G2241 Fragaria x ananassa HOM05D005134 ORTHO05D006548 1.6e-07 61.2 32 78.1


User provided reference genes

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