Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0016650 Sechium edule HOM05D004325 ORTHO05D005470 1.6e-101 372.9 197 100.0
Sed0024233 Sechium edule HOM05D004325 ORTHO05D005470 6.8e-89 330.9 197 89.8
ClCG05G006650 Citrullus lanatus HOM05D004325 ORTHO05D005470 2.2e-87 325.9 193 89.6
CsaV3_3G015280 Cucumis sativus L. HOM05D004325 ORTHO05D005470 6.4e-87 324.3 193 89.1
Cfa015290 Carpinus fangiana HOM05D004325 ORTHO05D005470 2.9e-79 298.9 193 82.4
Thecc.04G303800 Theobroma cacao HOM05D004325 ORTHO05D005470 2.9e-79 298.9 197 80.7
Lj6g0013793 Lotus japonicus HOM05D004325 ORTHO05D005470 6.4e-79 297.7 191 81.2
Eucgr.E02007 Eucalyptus grandis HOM05D004325 ORTHO05D005470 8.3e-79 297.4 191 81.2
Duzib151G0878 Durio zibethinus HOM05D004325 ORTHO05D005470 1.1e-78 297.0 192 81.2
CANSAT78G0850 Cannabis sativa HOM05D004325 ORTHO05D005470 1.4e-78 296.6 193 79.3
Haze_01324 Corylus avellana HOM05D004325 ORTHO05D005470 3.2e-78 295.4 189 81.0
Gohir.A01G034900 Gossypium hirsutum HOM05D004325 ORTHO05D005470 3.2e-78 295.4 199 77.9
arahy.Tifrunner.gnm1.ann1.NK7FC1 Arachis hypogaea HOM05D004325 ORTHO05D005470 5.4e-78 294.7 186 81.7
Cpa.g.sc9.38 Carica papaya HOM05D004325 ORTHO05D005470 5.4e-78 294.7 183 83.6
MD13G1150800 Malus domestica HOM05D004325 ORTHO05D005470 5.4e-78 294.7 189 81.5
COL.COLO4_34588 Corchorus olitorius HOM05D004325 ORTHO05D005470 9.2e-78 293.9 192 80.2
arahy.Tifrunner.gnm1.ann1.H88EK8 Arachis hypogaea HOM05D004325 ORTHO05D005470 1.2e-77 293.5 186 81.7
arahy.Tifrunner.gnm1.ann1.RG9184 Arachis hypogaea HOM05D004325 ORTHO05D005470 1.2e-77 293.5 186 81.7
Duzib052G1161 Durio zibethinus HOM05D004325 ORTHO05D005470 1.2e-77 293.5 199 79.4
MD16G1151300 Malus domestica HOM05D004325 ORTHO05D005470 2.1e-77 292.7 183 82.0
ECA233G2476 Erigeron canadensis HOM05D004325 ORTHO05D005470 3.5e-77 292.0 191 80.1
Medtr2g033830 Medicago truncatula HOM05D004325 ORTHO05D005470 3.5e-77 292.0 193 79.8
Actinidia13352 Actinidia chinensis HOM05D004325 ORTHO05D005470 4.6e-77 291.6 186 81.7
CSS0027180 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 4.6e-77 291.6 187 80.2
Ciclev10005911m.g Citrus clementina HOM05D004325 ORTHO05D005470 4.6e-77 291.6 194 77.8
Gohir.D01G023556 Gossypium hirsutum HOM05D004325 ORTHO05D005470 4.6e-77 291.6 199 77.4
Gorai.002G030800 Gossypium raimondii HOM05D004325 ORTHO05D005470 4.6e-77 291.6 199 77.4
RcHm_v2.0_Chr4g0425791 Rosa chinensis HOM05D004325 ORTHO05D005470 4.6e-77 291.6 195 78.5
Dinv44270 Davidia involucrata HOM05D004325 ORTHO05D005470 7.8e-77 290.8 190 81.6
Cc03_g00680 Coffea canephora HOM05D004325 ORTHO05D005470 1.0e-76 290.4 192 80.2
Peaxi162Scf00228g00059 Petunia axillaris HOM05D004325 ORTHO05D005470 1.3e-76 290.0 197 77.7
Glyma.09G034400 Glycine max HOM05D004325 ORTHO05D005470 2.3e-76 289.3 191 78.5
Prupe.1G115000 Prunus persica HOM05D004325 ORTHO05D005470 2.3e-76 289.3 183 81.4
Atru.chr4.3046 Acer truncatum HOM05D004325 ORTHO05D005470 3.0e-76 288.9 198 78.3
Ca_00969_v3 Cicer arietinum L. HOM05D004325 ORTHO05D005470 3.0e-76 288.9 185 79.5
Lalb_Chr12g0200831 Lupinus albus HOM05D004325 ORTHO05D005470 3.0e-76 288.9 188 79.8
Sc25g0003210 Simmondsia chinensis HOM05D004325 ORTHO05D005470 3.0e-76 288.9 198 77.8
Glyma.15G139100 Glycine max HOM05D004325 ORTHO05D005470 5.1e-76 288.1 196 76.5
VMungo0540G0568 Vigna mungo HOM05D004325 ORTHO05D005470 6.6e-76 287.7 188 78.7
Migut.N00036 Erythranthe guttata HOM05D004325 ORTHO05D005470 1.1e-75 287.0 181 80.7
TAR362G0217 Trochodendron aralioides HOM05D004325 ORTHO05D005470 1.1e-75 287.0 183 81.4
MBI19_g03261_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 1.5e-75 286.6 175 85.1
Psat1g162400 Pisum sativum HOM05D004325 ORTHO05D005470 1.9e-75 286.2 188 78.2
TPR.G30807 Trifolium pratense HOM05D004325 ORTHO05D005470 1.9e-75 286.2 194 78.9
Os12g0562900 Oryza sativa ssp. japonica HOM05D004325 ORTHO05D005470 2.5e-75 285.8 175 84.6
PGR004G2019 Punica granatum HOM05D004325 ORTHO05D005470 2.5e-75 285.8 191 78.5
Thhalv10004957m.g Eutrema salsugineum HOM05D004325 ORTHO05D005470 3.3e-75 285.4 194 76.3
Carub.0008s0936 Capsella rubella HOM05D004325 ORTHO05D005470 4.3e-75 285.0 194 76.3
FvH4_4g20250 Fragaria vesca HOM05D004325 ORTHO05D005470 4.3e-75 285.0 191 77.5
Manes.03G206300 Manihot esculenta HOM05D004325 ORTHO05D005470 4.3e-75 285.0 188 77.7
Phvul.006G119000 Phaseolus vulgaris HOM05D004325 ORTHO05D005470 4.3e-75 285.0 178 81.5
AT5G49510 Arabidopsis thaliana HOM05D004325 ORTHO05D005470 5.6e-75 284.6 194 76.3
Potri.008G103400 Populus trichocarpa HOM05D004325 ORTHO05D005470 5.6e-75 284.6 199 76.4
Sabra08G0078100 Salix brachista HOM05D004325 ORTHO05D005470 5.6e-75 284.6 200 76.0
Eucgr.D01575 Eucalyptus grandis HOM05D004325 ORTHO05D005470 7.3e-75 284.3 191 78.0
Hma1.2p1_0013F.1_g008360 Hydrangea macrophylla HOM05D004325 ORTHO05D005470 7.3e-75 284.3 184 79.9
AL8G23260 Arabidopsis lyrata HOM05D004325 ORTHO05D005470 1.2e-74 283.5 194 75.8
MSTRG.24825 Avicennia marina HOM05D004325 ORTHO05D005470 1.6e-74 283.1 184 80.4
PGSC0003DMG400027209 Solanum tuberosum HOM05D004325 ORTHO05D005470 1.6e-74 283.1 177 83.1
Solyc05g053390.4 Solanum lycopersicum HOM05D004325 ORTHO05D005470 2.1e-74 282.7 191 79.1
Sopen05g031900 Solanum pennellii HOM05D004325 ORTHO05D005470 2.1e-74 282.7 191 79.1
CARHR287830 Cardamine hirsuta HOM05D004325 ORTHO05D005470 2.8e-74 282.3 189 77.8
Hund03133 Selenicereus undatus HOM05D004325 ORTHO05D005470 2.8e-74 282.3 175 82.3
Potri.010G147600 Populus trichocarpa HOM05D004325 ORTHO05D005470 3.6e-74 282.0 192 77.6
THA.LOC104827099 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 3.6e-74 282.0 179 79.9
TAR633G1272 Trochodendron aralioides HOM05D004325 ORTHO05D005470 3.6e-74 282.0 181 80.1
Aa31LG11G8140 Aethionema arabicum HOM05D004325 ORTHO05D005470 6.2e-74 281.2 202 73.8
Sp2g19810 Schrenkiella parvula HOM05D004325 ORTHO05D005470 8.1e-74 280.8 194 75.3
SpUn0021_0040 Schrenkiella parvula HOM05D004325 ORTHO05D005470 8.1e-74 280.8 194 75.3
SGA_v2.0_scaffold528G52737 Striga asiatica HOM05D004325 ORTHO05D005470 8.1e-74 280.8 207 72.5
TWI73G0086 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 8.1e-74 280.8 185 77.8
CSS0047955 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 1.1e-73 280.4 176 80.7
HanXRQChr17g0569361 Helianthus annuus HOM05D004325 ORTHO05D005470 1.1e-73 280.4 192 75.5
Lsat_1_v5_gn_1_117981 Lactuca sativa HOM05D004325 ORTHO05D005470 1.1e-73 280.4 186 78.0
PSO832G3679 Papaver somniferum HOM05D004325 ORTHO05D005470 1.1e-73 280.4 197 76.6
Rhsim02G0002800 Rhododendron simsii HOM05D004325 ORTHO05D005470 1.1e-73 280.4 186 78.5
Nitab4.5_0000647g0250 Nicotiana tabacum HOM05D004325 ORTHO05D005470 2.4e-73 279.3 178 80.3
PSO421G0271 Papaver somniferum HOM05D004325 ORTHO05D005470 2.4e-73 279.3 186 78.0
AUR62039261 Chenopodium quinoa HOM05D004325 ORTHO05D005470 3.1e-73 278.9 189 76.2
PSO724G0368 Papaver somniferum HOM05D004325 ORTHO05D005470 5.2e-73 278.1 192 77.6
THA.LOC104802708 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 5.2e-73 278.1 195 77.4
Zm00001eb136920 Zea mays HOM05D004325 ORTHO05D005470 5.2e-73 278.1 183 78.7
Ah.13g071390 Amaranthus hybridus HOM05D004325 ORTHO05D005470 8.9e-73 277.3 192 77.6
BcaC04g23736 Brassica carinata HOM05D004325 ORTHO05D005470 8.9e-73 277.3 194 74.2
C09p05230 Brassica napus HOM05D004325 ORTHO05D005470 8.9e-73 277.3 194 74.2
A09p04850 Brassica napus HOM05D004325 ORTHO05D005470 1.5e-72 276.6 194 74.2
Nitab4.5_0004165g0020 Nicotiana tabacum HOM05D004325 ORTHO05D005470 1.5e-72 276.6 178 79.8
Zm00001eb028520 Zea mays HOM05D004325 ORTHO05D005470 1.5e-72 276.6 183 79.2
BraA09t36122Z Brassica rapa HOM05D004325 ORTHO05D005470 2.0e-72 276.2 194 73.7
BcaB04g19615 Brassica carinata HOM05D004325 ORTHO05D005470 3.4e-72 275.4 189 75.1
CDE01G0033 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 3.4e-72 275.4 179 77.1
PSO063G1209 Papaver somniferum HOM05D004325 ORTHO05D005470 3.4e-72 275.4 197 75.1
HPP92_027563 Vanilla planifolia HOM05D004325 ORTHO05D005470 3.4e-72 275.4 199 74.4
AUR62016229 Chenopodium quinoa HOM05D004325 ORTHO05D005470 5.8e-72 274.6 182 77.5
A06p38330 Brassica napus HOM05D004325 ORTHO05D005470 7.6e-72 274.2 194 73.7
C07p39920 Brassica napus HOM05D004325 ORTHO05D005470 7.6e-72 274.2 194 73.7
BolC7t44524H Brassica oleracea HOM05D004325 ORTHO05D005470 7.6e-72 274.2 194 73.7
BraA06t26747Z Brassica rapa HOM05D004325 ORTHO05D005470 7.6e-72 274.2 194 73.7
Nitab4.5_0000891g0010 Nicotiana tabacum HOM05D004325 ORTHO05D005470 7.6e-72 274.2 195 73.8
ATR0693G272 Amborella trichopoda HOM05D004325 ORTHO05D005470 2.2e-71 272.7 179 78.2
unitig_0.g2580 Utricularia gibba HOM05D004325 ORTHO05D005470 2.9e-71 272.3 178 77.5
Nitab4.5_0000177g0050 Nicotiana tabacum HOM05D004325 ORTHO05D005470 1.1e-70 270.4 195 72.8
vmacro15176 Vaccinium macrocarpon HOM05D004325 ORTHO05D005470 2.4e-70 269.2 233 64.8
FAN12G3971 Fragaria x ananassa HOM05D004325 ORTHO05D005470 5.4e-70 268.1 224 66.1
Aqoxy3G01635 Aquilegia oxysepala HOM05D004325 ORTHO05D005470 2.7e-69 265.8 187 75.9
Hund11985 Selenicereus undatus HOM05D004325 ORTHO05D005470 3.5e-69 265.4 181 74.0
FAN07G0536 Fragaria x ananassa HOM05D004325 ORTHO05D005470 7.8e-69 264.2 233 63.5
Sabra10G0113800 Salix brachista HOM05D004325 ORTHO05D005470 2.5e-67 259.2 238 63.4
Lj3A833G34 Lonicera japonica HOM05D004325 ORTHO05D005470 2.1e-66 256.1 156 85.3
SalBow5G2618 Salvia bowleyana HOM05D004325 ORTHO05D005470 1.1e-65 253.8 162 80.9
BolC9t53449H Brassica oleracea HOM05D004325 ORTHO05D005470 2.4e-65 252.7 254 57.5
TWI09G1034 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 1.3e-63 246.9 185 71.9
Nn3g21742 Nelumbo nucifera HOM05D004325 ORTHO05D005470 7.1e-62 241.1 180 72.8
Eucgr.E01999 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.6e-61 240.0 191 69.1
EL10Ac3g05527 Beta vulgaris HOM05D004325 ORTHO05D005470 2.7e-61 239.2 164 78.0
SEGI_09014 Sequoiadendron giganteum HOM05D004325 ORTHO05D005470 6.0e-61 238.0 188 67.0
MELO3C006723.2 Cucumis melo HOM05D004325 ORTHO05D005470 1.1e-59 233.8 140 87.9
CAN.G945.3 Capsicum annuum HOM05D004325 ORTHO05D005470 4.3e-59 231.9 141 85.8
Mapoly0057s0039 Marchantia polymorpha HOM05D004325 ORTHO05D005470 6.2e-58 228.0 172 66.3
SMO116G0307 Selaginella moellendorffii HOM05D004325 ORTHO05D005470 6.2e-58 228.0 185 64.3
TPR.G28959 Trifolium pratense HOM05D004325 ORTHO05D005470 5.3e-57 224.9 143 79.7
GSVIVG01034969001 Vitis vinifera HOM05D004325 ORTHO05D005470 6.9e-57 224.6 130 86.9
Oeu001162.1 Olea europaea HOM05D004325 ORTHO05D005470 2.6e-56 222.6 138 84.1
AagrBONN_evm.TU.Sc2ySwM_344.4436 Anthoceros agrestis HOM05D004325 ORTHO05D005470 8.4e-55 217.6 177 60.5
Pp3c8_18130 Physcomitrium patens HOM05D004325 ORTHO05D005470 3.5e-53 212.2 177 61.0
CiPaw.01G136700 Carya illinoinensis HOM05D004325 ORTHO05D005470 4.6e-53 211.8 129 82.9
Lalb_Chr13g0298551 Lupinus albus HOM05D004325 ORTHO05D005470 9.0e-49 197.6 133 77.4
Eucgr.E01982 Eucalyptus grandis HOM05D004325 ORTHO05D005470 5.8e-48 194.9 125 82.4
HPP92_017247 Vanilla planifolia HOM05D004325 ORTHO05D005470 8.4e-47 191.0 130 78.5
CDE12G0495 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 1.4e-46 190.3 127 74.8
Sopen01g024490 Solanum pennellii HOM05D004325 ORTHO05D005470 3.0e-44 182.6 112 84.8
CiPaw.02G073600 Carya illinoinensis HOM05D004325 ORTHO05D005470 1.1e-43 180.6 202 54.5
MSTRG.3849 Avicennia marina HOM05D004325 ORTHO05D005470 1.6e-42 176.8 124 70.2
QL06p012738 Quercus lobata HOM05D004325 ORTHO05D005470 1.9e-38 163.3 97 84.5
Eucgr.D01586 Eucalyptus grandis HOM05D004325 ORTHO05D005470 4.2e-38 162.2 104 80.8
Eucgr.D01598 Eucalyptus grandis HOM05D004325 ORTHO05D005470 9.3e-38 161.0 111 77.5
Actinidia18462 Actinidia chinensis HOM05D004325 ORTHO05D005470 1.5e-35 153.7 115 73.0
PRCOL_00000812 Prasinoderma coloniale HOM05D004325 ORTHO05D005470 1.3e-34 150.6 168 48.2
Eucgr.D01580 Eucalyptus grandis HOM05D004325 ORTHO05D005470 2.8e-34 149.4 83 89.2
HPP92_017255 Vanilla planifolia HOM05D004325 ORTHO05D005470 5.3e-33 145.2 106 75.5
Eucgr.D01581 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.1e-30 137.5 81 85.2
QL06p012730 Quercus lobata HOM05D004325 ORTHO05D005470 5.5e-30 135.2 95 76.8
Haze_26161 Corylus avellana HOM05D004325 ORTHO05D005470 7.2e-30 134.8 173 41.0
Dinv15146 Davidia involucrata HOM05D004325 ORTHO05D005470 9.4e-30 134.4 104 69.2
MCO08G322 Micromonas commoda HOM05D004325 ORTHO05D005470 2.7e-29 132.9 164 43.9
DCAR_026989 Daucus carota HOM05D004325 ORTHO05D005470 7.9e-29 131.3 92 77.2
Eucgr.D01577 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.1e-27 127.5 92 71.7
CBR_g12436 Chara braunii HOM05D004325 ORTHO05D005470 1.4e-25 120.6 88 67.0
Cre06.g261650 Chlamydomonas reinhardtii HOM05D004325 ORTHO05D005470 4.1e-25 119.0 187 37.4
MBI14_g36884_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 1.2e-24 117.5 106 63.2
Glyma.17G035301 Glycine max HOM05D004325 ORTHO05D005470 8.5e-23 111.3 101 61.4
Glyma.07G238200 Glycine max HOM05D004325 ORTHO05D005470 1.1e-22 110.9 77 72.7
Actinidia31558 Actinidia chinensis HOM05D004325 ORTHO05D005470 2.6e-19 99.8 60 81.7
Eucgr.E01978 Eucalyptus grandis HOM05D004325 ORTHO05D005470 2.0e-16 90.1 60 73.3
Solyc01g058597.1 Solanum lycopersicum HOM05D004325 ORTHO05D005470 2.2e-10 70.1 42 81.0
TPR.G26018 Trifolium pratense HOM05D004325 ORTHO05D049290 8.2e-10 68.2 63 58.7
CSS0004484 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 1.1e-09 67.8 116 46.6
CSS0039135 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 3.1e-09 66.2 116 45.7
CSS0044452 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 3.1e-09 66.2 116 45.7
TPR.G25439 Trifolium pratense HOM05D004325 ORTHO05D005470 7.0e-09 65.1 115 42.6
CSS0031168 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 1.2e-08 64.3 116 44.8
CSS0013046 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 1.6e-08 63.9 114 43.9
Actinidia14254 Actinidia chinensis HOM05D004325 ORTHO05D005470 2.9e-07 59.7 36 83.3


User provided reference genes

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