Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0016632 Sechium edule HOM05D003940 ORTHO05D004461 1.6e-49 199.1 104 100.0
ClCG06G006840 Citrullus lanatus HOM05D003940 ORTHO05D004461 2.8e-25 118.6 97 69.1
MELO3C022975.2 Cucumis melo HOM05D003940 ORTHO05D004461 2.0e-23 112.5 133 57.9
CsaV3_2G012950 Cucumis sativus L. HOM05D003940 ORTHO05D004461 1.1e-21 106.7 108 62.0
CiPaw.01G188000 Carya illinoinensis HOM05D003940 ORTHO05D004461 3.3e-18 95.1 113 58.4
CANSAT78G1835 Cannabis sativa HOM05D003940 ORTHO05D004461 3.7e-17 91.7 120 54.2
Psat6g132880 Pisum sativum HOM05D003940 ORTHO05D004461 6.3e-17 90.9 107 55.1
Sed0008236 Sechium edule HOM05D003940 ORTHO05D004461 2.4e-16 89.0 80 60.0
TPR.G26431 Trifolium pratense HOM05D006440 ORTHO05D003987 3.1e-16 88.6 94 58.5
Glyma.20G202600 Glycine max HOM05D003940 ORTHO05D004461 5.3e-16 87.8 88 61.4
Lalb_Chr21g0312371 Lupinus albus HOM05D003940 ORTHO05D004461 2.0e-15 85.9 88 56.8
PGR031G1035 Punica granatum HOM05D003940 ORTHO05D004461 2.6e-15 85.5 105 51.4
TWI73G0411 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 2.6e-15 85.5 111 52.3
QL06p016655 Quercus lobata HOM05D003940 ORTHO05D004461 3.4e-15 85.1 109 56.9
Ca_09815_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 7.7e-15 84.0 100 55.0
Hma1.2p1_0986F.1_g244370 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 7.7e-15 84.0 110 53.6
FAN12G3937 Fragaria x ananassa HOM05D003940 ORTHO05D004461 1.0e-14 83.6 126 50.8
Phvul.007G129450 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 1.0e-14 83.6 88 61.4
TAR362G0514 Trochodendron aralioides HOM05D003940 ORTHO05D004461 1.0e-14 83.6 111 48.6
Glyma.10G188200 Glycine max HOM05D003940 ORTHO05D004461 1.3e-14 83.2 88 60.2
THA.LOC104822248 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 1.7e-14 82.8 101 54.5
GSVIVG01027728001 Vitis vinifera HOM05D000515 ORTHO05D003188 1.7e-14 82.8 92 56.5
FAN17G2041 Fragaria x ananassa HOM05D003940 ORTHO05D004461 2.2e-14 82.4 126 50.8
TWI09G0780 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 2.9e-14 82.0 108 50.9
Ciclev10006290m.g Citrus clementina HOM05D003940 ORTHO05D004461 3.8e-14 81.6 113 52.2
FvH4_4g03100 Fragaria vesca HOM05D003940 ORTHO05D004461 5.0e-14 81.3 128 50.8
Sabra10G0034600 Salix brachista HOM05D003940 ORTHO05D004461 5.0e-14 81.3 113 52.2
Lalb_Chr19g0128361 Lupinus albus HOM05D003940 ORTHO05D004461 6.5e-14 80.9 105 51.4
FAN22G2069 Fragaria x ananassa HOM05D003940 ORTHO05D004461 8.5e-14 80.5 128 50.8
CSS0034657 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 1.1e-13 80.1 99 52.5
COL.COLO4_15828 Corchorus olitorius HOM05D003940 ORTHO05D004461 1.1e-13 80.1 115 51.3
AUR62002262 Chenopodium quinoa HOM05D003940 ORTHO05D004461 1.4e-13 79.7 89 59.6
MD16G1213100 Malus domestica HOM05D003940 ORTHO05D004461 1.4e-13 79.7 118 49.2
TAR365G0320 Trochodendron aralioides HOM05D003940 ORTHO05D004461 1.4e-13 79.7 115 48.7
Dinv44656 Davidia involucrata HOM05D003940 ORTHO05D004461 1.9e-13 79.3 112 50.9
Cfa008351 Carpinus fangiana HOM05D003940 ORTHO05D004461 2.5e-13 79.0 110 50.9
Potri.008G164801 Populus trichocarpa HOM05D003940 ORTHO05D004461 2.5e-13 79.0 113 53.1
Prupe.1G034700 Prunus persica HOM05D003940 ORTHO05D004461 2.5e-13 79.0 120 49.2
EL10Ac3g05913 Beta vulgaris HOM05D003940 ORTHO05D004461 3.2e-13 78.6 94 54.3
CsaV3_3G012380 Cucumis sativus L. HOM05D000244 ORTHO05D000179 3.2e-13 78.6 110 48.2
Sp1g03140 Schrenkiella parvula HOM05D003940 ORTHO05D004461 3.2e-13 78.6 95 51.6
Haze_11334 Corylus avellana HOM05D003940 ORTHO05D004461 4.2e-13 78.2 115 49.6
Lj5g0009696 Lotus japonicus HOM05D003940 ORTHO05D004461 4.2e-13 78.2 91 56.0
THA.LOC104808609 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 4.2e-13 78.2 105 46.7
Glyma.10G008021 Glycine max HOM05D003940 ORTHO05D004461 5.5e-13 77.8 89 53.9
Duzib151G0370 Durio zibethinus HOM05D003940 ORTHO05D004461 7.2e-13 77.4 116 50.0
Peaxi162Scf00024g01711 Petunia axillaris HOM05D003940 ORTHO05D004461 7.2e-13 77.4 115 46.1
RcHm_v2.0_Chr4g0391391 Rosa chinensis HOM05D003940 ORTHO05D004461 7.2e-13 77.4 128 50.0
TPR.G15869 Trifolium pratense HOM05D003940 ORTHO05D004461 7.2e-13 77.4 107 48.6
C07p14380 Brassica napus HOM05D003940 ORTHO05D004461 9.4e-13 77.0 101 51.5
Duzib212G0271 Durio zibethinus HOM05D003940 ORTHO05D004461 9.4e-13 77.0 118 50.8
Sc25g0004050 Simmondsia chinensis HOM05D003940 ORTHO05D004461 9.4e-13 77.0 86 55.8
MSTRG.9915 Avicennia marina HOM05D003940 ORTHO05D004461 1.2e-12 76.6 105 52.4
Nitab4.5_0000342g0180 Nicotiana tabacum HOM05D003940 ORTHO05D004461 1.2e-12 76.6 115 47.8
BraA07t28731Z Brassica rapa HOM05D003940 ORTHO05D004461 2.1e-12 75.9 103 50.5
Thhalv10027546m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 2.1e-12 75.9 112 47.3
A07p09330 Brassica napus HOM05D003940 ORTHO05D004461 2.7e-12 75.5 103 50.5
Cpa.g.sc44.90 Carica papaya HOM05D003940 ORTHO05D004461 2.7e-12 75.5 102 52.0
Thhalv10009178m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 2.7e-12 75.5 95 50.5
Thhalv10021654m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 2.7e-12 75.5 88 51.1
Sc19g0003500 Simmondsia chinensis HOM05D003940 ORTHO05D004461 2.7e-12 75.5 85 57.6
Thecc.04G250000 Theobroma cacao HOM05D003940 ORTHO05D004461 2.7e-12 75.5 115 50.4
AL1G13930 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 3.6e-12 75.1 95 49.5
AL3G37790 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 3.6e-12 75.1 90 52.2
BcaB06g26449 Brassica carinata HOM05D003940 ORTHO05D004461 3.6e-12 75.1 101 50.5
AUR62015478 Chenopodium quinoa HOM05D000816 ORTHO05D005265 3.6e-12 75.1 90 56.7
Manes.15G038200 Manihot esculenta HOM05D003940 ORTHO05D004461 3.6e-12 75.1 115 48.7
AT1G04330 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 4.6e-12 74.7 95 49.5
CARHR003650 Cardamine hirsuta HOM05D003940 ORTHO05D004461 4.6e-12 74.7 95 50.5
ClCG05G004480 Citrullus lanatus HOM05D003940 ORTHO05D004461 4.6e-12 74.7 98 52.0
Nn1g00062 Nelumbo nucifera HOM05D003940 ORTHO05D004461 4.6e-12 74.7 135 43.0
Nn1g02702 Nelumbo nucifera HOM05D003940 ORTHO05D004461 4.6e-12 74.7 135 43.0
Aqoxy5G00265 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 6.1e-12 74.3 119 43.7
BcaC05g24452 Brassica carinata HOM05D003940 ORTHO05D004461 6.1e-12 74.3 94 48.9
Rhsim04G0188200 Rhododendron simsii HOM05D003940 ORTHO05D004461 6.1e-12 74.3 109 45.9
PGSC0003DMG400016324 Solanum tuberosum HOM05D003940 ORTHO05D004461 6.1e-12 74.3 111 48.6
THA.LOC104822808 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 6.1e-12 74.3 102 48.0
BolC7t41935H Brassica oleracea HOM05D003940 ORTHO05D004461 7.9e-12 73.9 101 50.5
Gorai.006G248700 Gossypium raimondii HOM05D003940 ORTHO05D004461 7.9e-12 73.9 117 47.9
Potri.010G073900 Populus trichocarpa HOM05D003940 ORTHO05D004461 7.9e-12 73.9 115 48.7
Solyc06g053700.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 7.9e-12 73.9 111 47.7
Sopen06g018810 Solanum pennellii HOM05D003940 ORTHO05D004461 7.9e-12 73.9 111 47.7
CSS0017531 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 1.0e-11 73.6 84 51.2
Gohir.A09G225100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.0e-11 73.6 117 47.9
Gohir.D09G226800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.0e-11 73.6 120 47.5
Psat6g138240 Pisum sativum HOM05D003940 ORTHO05D004461 1.0e-11 73.6 109 47.7
AT3G23170 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 1.4e-11 73.2 92 50.0
Carub.0001s0351 Capsella rubella HOM05D003940 ORTHO05D004461 1.4e-11 73.2 92 50.0
Gohir.D10G154400 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.4e-11 73.2 109 50.5
Gorai.011G172300 Gossypium raimondii HOM05D003940 ORTHO05D004461 1.4e-11 73.2 109 50.5
Nitab4.5_0007234g0020 Nicotiana tabacum HOM05D003940 ORTHO05D004461 1.4e-11 73.2 115 47.0
C05p02510 Brassica napus HOM05D003940 ORTHO05D004461 1.8e-11 72.8 95 48.4
Phvul.007G272100 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 1.8e-11 72.8 92 50.0
Cc03_g05120 Coffea canephora HOM05D003940 ORTHO05D004461 2.3e-11 72.4 114 50.0
Hma1.2p1_0310F.1_g120730 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 2.3e-11 72.4 119 46.2
MD13G1210200 Malus domestica HOM05D003940 ORTHO05D004461 2.3e-11 72.4 121 48.8
Medtr1g073910 Medicago truncatula HOM05D003940 ORTHO05D004461 2.3e-11 72.4 100 52.0
TWI53G1738 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 2.3e-11 72.4 110 49.1
TWI53G1893 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 2.3e-11 72.4 110 49.1
TAR636G1753 Trochodendron aralioides HOM05D003940 ORTHO05D004461 3.0e-11 72.0 111 46.8
A10p02740 Brassica napus HOM05D003940 ORTHO05D004461 3.9e-11 71.6 95 48.4
BraA10t42542Z Brassica rapa HOM05D003940 ORTHO05D004461 3.9e-11 71.6 95 48.4
BolC5t29030H Brassica oleracea HOM05D003940 ORTHO05D004461 5.1e-11 71.2 95 47.4
Migut.G00452 Erythranthe guttata HOM05D003940 ORTHO05D004461 6.7e-11 70.9 88 51.1
CARHR220660 Cardamine hirsuta HOM05D003940 ORTHO05D004461 8.8e-11 70.5 92 45.7
AT4G14450 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 1.5e-10 69.7 111 44.1
Migut.G00451 Erythranthe guttata HOM05D003940 ORTHO05D004461 1.5e-10 69.7 88 54.5
HanXRQChr03g0092241 Helianthus annuus HOM05D003940 ORTHO05D004461 1.5e-10 69.7 80 53.8
PSO210G0601 Papaver somniferum HOM05D003940 ORTHO05D004461 1.5e-10 69.7 97 49.5
TAR602G0001 Trochodendron aralioides HOM05D003940 ORTHO05D004461 1.5e-10 69.7 111 44.1
Ca_05393_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 2.0e-10 69.3 108 48.1
Lj6g0004880 Lotus japonicus HOM05D003940 ORTHO05D004461 2.5e-10 68.9 98 53.1
CAN.G738.11 Capsicum annuum HOM05D003940 ORTHO05D004461 3.3e-10 68.6 111 45.9
Lsat_1_v5_gn_5_72560 Lactuca sativa HOM05D003940 ORTHO05D004461 3.3e-10 68.6 87 51.7
Oeu063884.1 Olea europaea HOM05D003940 ORTHO05D004461 3.3e-10 68.6 108 48.1
Aa31LG8G9650 Aethionema arabicum HOM05D003940 ORTHO05D004461 4.3e-10 68.2 113 44.2
AL7G41690 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 4.3e-10 68.2 110 44.5
PGR004G1022 Punica granatum HOM05D003940 ORTHO05D004461 4.3e-10 68.2 113 45.1
BcaC07g42173 Brassica carinata HOM05D003940 ORTHO05D004461 5.7e-10 67.8 75 53.3
BcaC07g42193 Brassica carinata HOM05D003940 ORTHO05D004461 5.7e-10 67.8 75 53.3
SalBow3G4424 Salvia bowleyana HOM05D003940 ORTHO05D004461 5.7e-10 67.8 86 54.7
CAN.G793.6 Capsicum annuum HOM05D003940 ORTHO05D004461 7.4e-10 67.4 109 44.0
ECA233G6082 Erigeron canadensis HOM05D003940 ORTHO05D004461 7.4e-10 67.4 90 47.8
Eucgr.H03139 Eucalyptus grandis HOM05D003940 ORTHO05D004461 7.4e-10 67.4 118 45.8
Peaxi162Scf00325g00012 Petunia axillaris HOM05D003940 ORTHO05D004461 7.4e-10 67.4 105 49.5
Peaxi162Scf00325g00015 Petunia axillaris HOM05D003940 ORTHO05D004461 7.4e-10 67.4 105 49.5
Sp7g12530 Schrenkiella parvula HOM05D003940 ORTHO05D004461 7.4e-10 67.4 112 42.9
Lsat_1_v5_gn_3_122140 Lactuca sativa HOM05D003940 ORTHO05D004461 9.7e-10 67.0 91 50.5
Solyc09g089650.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 9.7e-10 67.0 110 44.5
PGSC0003DMG400017255 Solanum tuberosum HOM05D003940 ORTHO05D004461 9.7e-10 67.0 108 45.4
Sopen09g032590 Solanum pennellii HOM05D003940 ORTHO05D004461 1.7e-09 66.2 110 44.5
Actinidia04462 Actinidia chinensis HOM05D003940 ORTHO05D004461 2.2e-09 65.9 101 48.5
CiPaw.02G114800 Carya illinoinensis HOM05D003940 ORTHO05D004461 2.2e-09 65.9 113 48.7
vmacro08448 Vaccinium macrocarpon HOM05D003940 ORTHO05D004461 2.2e-09 65.9 109 45.0
Gorai.006G070500 Gossypium raimondii HOM05D003940 ORTHO05D004461 4.8e-09 64.7 113 46.9
Oeu025569.1 Olea europaea HOM05D003940 ORTHO05D004461 4.8e-09 64.7 109 45.9
Sed0000021 Sechium edule HOM05D003940 ORTHO05D004461 4.8e-09 64.7 112 44.6
BcaC02g09310 Brassica carinata HOM05D003940 ORTHO05D004461 6.3e-09 64.3 102 45.1
A04p07580 Brassica napus HOM05D003940 ORTHO05D004461 6.3e-09 64.3 102 42.2
C04p41270 Brassica napus HOM05D003940 ORTHO05D004461 6.3e-09 64.3 102 45.1
BolC4t25705H Brassica oleracea HOM05D003940 ORTHO05D004461 6.3e-09 64.3 102 45.1
Sp3g20820 Schrenkiella parvula HOM05D003940 ORTHO05D004461 6.3e-09 64.3 99 46.5
BraA04t16449Z Brassica rapa HOM05D003940 ORTHO05D004461 8.2e-09 63.9 102 42.2
CARHR099110 Cardamine hirsuta HOM05D003940 ORTHO05D004461 8.2e-09 63.9 89 49.4
VMungo0720G0726 Vigna mungo HOM05D003940 ORTHO05D004461 8.2e-09 63.9 95 48.4
Medtr1g044125 Medicago truncatula HOM05D003940 ORTHO05D004461 1.1e-08 63.5 106 45.3
SalBow2G1766 Salvia bowleyana HOM05D003940 ORTHO05D004461 1.1e-08 63.5 99 48.5
Sc13g0005150 Simmondsia chinensis HOM05D003940 ORTHO05D004461 1.1e-08 63.5 83 47.0
Migut.N00250 Erythranthe guttata HOM05D003940 ORTHO05D004461 1.4e-08 63.2 89 51.7
Gohir.A10G112500 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.4e-08 63.2 116 45.7
HanXRQChr13g0425481 Helianthus annuus HOM05D003940 ORTHO05D004461 1.4e-08 63.2 93 46.2
MBI18_g43342_MAGBIO Magnolia biondii HOM05D003940 ORTHO05D004461 1.4e-08 63.2 107 43.0
SGA_v2.0_scaffold101G29832 Striga asiatica HOM05D003940 ORTHO05D004461 1.4e-08 63.2 106 50.0
Carub.0003s2339 Capsella rubella HOM05D003940 ORTHO05D004461 1.8e-08 62.8 97 45.4
SHI00703 Sapria himalayana HOM05D003940 ORTHO05D004461 1.8e-08 62.8 99 43.4
BcaB02g08606 Brassica carinata HOM05D003940 ORTHO05D004461 2.4e-08 62.4 102 41.2
Gohir.D09G056900 Gossypium hirsutum HOM05D003940 ORTHO05D004461 4.1e-08 61.6 113 46.0
Aqoxy2G03616 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 6.9e-08 60.8 108 44.4
Nn3g19606 Nelumbo nucifera HOM05D003940 ORTHO05D004461 6.9e-08 60.8 121 39.7
Gohir.D02G043800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.2e-07 60.1 115 44.3
Gohir.A09G057700 Gossypium hirsutum HOM05D003940 ORTHO05D004461 2.0e-07 59.3 113 43.4
Gorai.005G048200 Gossypium raimondii HOM05D003940 ORTHO05D004461 2.6e-07 58.9 115 43.5
Atru.chr4.2138 Acer truncatum HOM05D003940 ORTHO05D004461 3.4e-07 58.5 118 45.8
A03p43180 Brassica napus HOM05D003940 ORTHO05D004461 4.5e-07 58.2 87 44.8
Gohir.A02G037100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 4.5e-07 58.2 116 44.0
DCAR_027292 Daucus carota HOM05D003940 ORTHO05D004461 5.9e-07 57.8 104 40.4
DCAR_027293 Daucus carota HOM05D003940 ORTHO05D004461 5.9e-07 57.8 104 40.4
BraA03t13459Z Brassica rapa HOM05D003940 ORTHO05D004461 7.7e-07 57.4 88 43.2
unitig_32.g11714 Utricularia gibba HOM05D003940 ORTHO05D004461 1.7e-06 56.2 78 44.9
Aa31LG9G2850 Aethionema arabicum HOM05D003940 ORTHO05D004461 2.2e-06 55.8 84 45.2
FvH4_7g33480 Fragaria vesca HOM05D003940 ORTHO05D004461 2.9e-06 55.5 70 52.9
Carub.0007s2777 Capsella rubella HOM05D003940 ORTHO05D004461 6.5e-06 54.3 113 37.2


User provided reference genes

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