Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0016620 Sechium edule HOM05D003667 ORTHO05D004397 9.4e-119 430.3 225 100.0
CsaV3_4G012110 Cucumis sativus L. HOM05D003667 ORTHO05D004397 1.7e-104 382.9 221 90.0
MELO3C008823.2 Cucumis melo HOM05D003667 ORTHO05D004397 5.0e-104 381.3 221 89.6
ClCG04G005470 Citrullus lanatus HOM05D003667 ORTHO05D004397 8.6e-104 380.6 221 90.0
Sed0010728 Sechium edule HOM05D003667 ORTHO05D004397 4.0e-101 371.7 225 86.7
ClCG02G007830 Citrullus lanatus HOM05D003667 ORTHO05D004397 8.9e-101 370.5 224 86.6
CANSAT78G1932 Cannabis sativa HOM05D003667 ORTHO05D004397 2.4e-90 335.9 223 76.2
Hma1.2p1_0106F.1_g051140 Hydrangea macrophylla HOM05D003667 ORTHO05D004397 1.0e-88 330.5 218 76.1
Nn7g37255 Nelumbo nucifera HOM05D003667 ORTHO05D004397 1.7e-88 329.7 227 75.3
RcHm_v2.0_Chr5g0045181 Rosa chinensis HOM05D003667 ORTHO05D004397 1.1e-87 327.0 221 74.7
MD02G1195300 Malus domestica HOM05D003667 ORTHO05D004397 1.9e-87 326.2 225 75.1
FAN25G1089 Fragaria x ananassa HOM05D003667 ORTHO05D004397 3.3e-87 325.5 221 74.7
TAR623G0153 Trochodendron aralioides HOM05D003667 ORTHO05D004397 4.3e-87 325.1 220 75.0
Lj2A112G40 Lonicera japonica HOM05D003667 ORTHO05D004397 9.5e-87 323.9 221 74.2
Nn6g34578 Nelumbo nucifera HOM05D003667 ORTHO05D004397 9.5e-87 323.9 221 74.2
Eucgr.K01520 Eucalyptus grandis HOM05D003667 ORTHO05D004397 3.6e-86 322.0 227 72.7
GSVIVG01029952001 Vitis vinifera HOM05D003667 ORTHO05D004397 3.6e-86 322.0 225 71.6
FvH4_3g25040 Fragaria vesca HOM05D003667 ORTHO05D004397 4.7e-86 321.6 218 74.3
Gohir.A11G231200 Gossypium hirsutum HOM05D003667 ORTHO05D004397 6.2e-86 321.2 221 72.4
Gohir.D11G242600 Gossypium hirsutum HOM05D003667 ORTHO05D004397 6.2e-86 321.2 221 72.9
Gorai.007G256800 Gossypium raimondii HOM05D003667 ORTHO05D004397 8.1e-86 320.9 221 72.4
Ciclev10022078m.g Citrus clementina HOM05D003667 ORTHO05D004397 1.1e-85 320.5 222 73.0
FAN11G0144 Fragaria x ananassa HOM05D003667 ORTHO05D004397 1.1e-85 320.5 218 73.9
FAN21G0540 Fragaria x ananassa HOM05D003667 ORTHO05D004397 1.1e-85 320.5 220 74.1
COL.COLO4_28620 Corchorus olitorius HOM05D003667 ORTHO05D004397 1.8e-85 319.7 223 72.2
Thecc.05G244000 Theobroma cacao HOM05D003667 ORTHO05D004397 5.2e-85 318.2 223 70.9
Duzib106G0749 Durio zibethinus HOM05D003667 ORTHO05D004397 6.8e-85 317.8 223 70.9
MBI17_g12494_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 3.4e-84 315.5 224 72.8
PSO541G6155 Papaver somniferum HOM05D003667 ORTHO05D004397 9.8e-84 313.9 225 69.3
Actinidia06203 Actinidia chinensis HOM05D003667 ORTHO05D004397 2.2e-83 312.8 230 68.7
Prupe.2G153200 Prunus persica HOM05D003667 ORTHO05D004397 2.2e-83 312.8 223 74.9
Actinidia07960 Actinidia chinensis HOM05D003667 ORTHO05D004397 4.9e-83 311.6 230 68.7
PSO170G5262 Papaver somniferum HOM05D003667 ORTHO05D004397 8.3e-83 310.8 221 68.8
PSO675G2224 Papaver somniferum HOM05D003667 ORTHO05D004397 2.4e-82 309.3 225 68.4
TWI38G1994 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 3.2e-82 308.9 222 69.4
Atru.chr2.1481 Acer truncatum HOM05D003667 ORTHO05D004397 4.1e-82 308.5 221 71.9
PSO357G0141 Papaver somniferum HOM05D003667 ORTHO05D004397 7.1e-82 307.8 221 68.3
CiPaw.03G011100 Carya illinoinensis HOM05D003667 ORTHO05D004397 2.1e-81 306.2 220 73.6
Rhsim13G0206500 Rhododendron simsii HOM05D003667 ORTHO05D004397 2.1e-81 306.2 219 72.1
CSS0004374 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 4.6e-81 305.1 222 70.3
Manes.09G137700 Manihot esculenta HOM05D003667 ORTHO05D004397 6.0e-81 304.7 222 68.5
CSS0013214 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 7.8e-81 304.3 222 69.8
Phvul.006G027100 Phaseolus vulgaris HOM05D003667 ORTHO05D004397 1.0e-80 303.9 223 70.9
HanXRQChr07g0197181 Helianthus annuus HOM05D003667 ORTHO05D004397 3.0e-80 302.4 221 71.9
Glyma.08G304700 Glycine max HOM05D003667 ORTHO05D004397 5.1e-80 301.6 227 69.6
Ca_13917_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 6.6e-80 301.2 226 71.2
MBI05_g12099_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 6.6e-80 301.2 209 72.2
arahy.Tifrunner.gnm1.ann1.FV18MX Arachis hypogaea HOM05D003667 ORTHO05D004397 3.3e-79 298.9 225 68.0
Medtr3g450200 Medicago truncatula HOM05D003667 ORTHO05D004397 3.3e-79 298.9 226 71.2
arahy.Tifrunner.gnm1.ann1.7QGR70 Arachis hypogaea HOM05D003667 ORTHO05D004397 9.5e-79 297.4 225 68.0
CARHR131380 Cardamine hirsuta HOM05D003667 ORTHO05D004397 1.2e-78 297.0 221 67.0
Carub.0004s1876 Capsella rubella HOM05D003667 ORTHO05D004397 1.6e-78 296.6 221 66.5
AL4G33130 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 2.1e-78 296.2 221 65.6
Sopen07g024170 Solanum pennellii HOM05D003667 ORTHO05D004397 2.1e-78 296.2 229 66.8
Haze_14026 Corylus avellana HOM05D003667 ORTHO05D004397 2.8e-78 295.8 219 71.7
arahy.Tifrunner.gnm1.ann1.VNW58P Arachis hypogaea HOM05D003667 ORTHO05D004397 4.7e-78 295.0 222 68.0
C04p11070 Brassica napus HOM05D003667 ORTHO05D004397 4.7e-78 295.0 221 67.0
BolC4t22755H Brassica oleracea HOM05D003667 ORTHO05D004397 4.7e-78 295.0 221 67.0
Oeu035461.1 Olea europaea HOM05D003667 ORTHO05D004397 4.7e-78 295.0 230 66.5
Solyc07g047720.3 Solanum lycopersicum HOM05D003667 ORTHO05D004397 4.7e-78 295.0 231 65.8
THA.LOC104823778 Tarenaya hassleriana HOM05D003667 ORTHO05D004397 4.7e-78 295.0 226 66.8
A05p08960 Brassica napus HOM05D003667 ORTHO05D004397 6.2e-78 294.7 221 67.0
Thhalv10017208m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 6.2e-78 294.7 221 66.5
BraA05t19858Z Brassica rapa HOM05D003667 ORTHO05D004397 8.1e-78 294.3 221 67.0
Glyma.18G114700 Glycine max HOM05D003667 ORTHO05D004397 8.1e-78 294.3 224 69.6
PGSC0003DMG400006127 Solanum tuberosum HOM05D003667 ORTHO05D004397 8.1e-78 294.3 238 64.3
TWI38G1198 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 8.1e-78 294.3 221 67.4
Potri.013G062900 Populus trichocarpa HOM05D003667 ORTHO05D004397 1.1e-77 293.9 222 67.1
AT2G36900 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 2.3e-77 292.7 221 65.2
Sp4g19200 Schrenkiella parvula HOM05D003667 ORTHO05D004397 2.3e-77 292.7 221 66.1
TPR.G8769 Trifolium pratense HOM05D003667 ORTHO05D004397 2.3e-77 292.7 225 68.9
Aqoxy1G00535 Aquilegia oxysepala HOM05D003667 ORTHO05D004397 4.0e-77 292.0 221 67.9
PGSC0003DMG400018832 Solanum tuberosum HOM05D003667 ORTHO05D004397 4.0e-77 292.0 236 65.7
Sabra13G0056100 Salix brachista HOM05D003667 ORTHO05D004397 6.8e-77 291.2 218 66.5
BcaB02g09321 Brassica carinata HOM05D003667 ORTHO05D004397 8.9e-77 290.8 220 66.4
CDE10G1021 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 1.5e-76 290.0 219 66.7
Aa31LG6G14320 Aethionema arabicum HOM05D003667 ORTHO05D004397 2.6e-76 289.3 223 66.8
Nitab4.5_0001774g0040 Nicotiana tabacum HOM05D003667 ORTHO05D004397 3.4e-76 288.9 235 63.4
Hund10761 Selenicereus undatus HOM05D003667 ORTHO05D004397 3.4e-76 288.9 219 66.2
CARHR257860 Cardamine hirsuta HOM05D003667 ORTHO05D004397 4.4e-76 288.5 220 66.4
Medtr5g090520 Medicago truncatula HOM05D003667 ORTHO05D004397 5.8e-76 288.1 225 67.6
Cpa.g.sc28.13 Carica papaya HOM05D003667 ORTHO05D004397 7.6e-76 287.7 218 66.5
Lj2g0005685 Lotus japonicus HOM05D003667 ORTHO05D004397 1.3e-75 287.0 222 68.0
Nitab4.5_0001741g0020 Nicotiana tabacum HOM05D003667 ORTHO05D004397 1.3e-75 287.0 231 65.8
CAN.G992.19 Capsicum annuum HOM05D003667 ORTHO05D004397 1.7e-75 286.6 235 63.8
MSTRG.26557 Avicennia marina HOM05D003667 ORTHO05D004397 2.2e-75 286.2 235 65.5
Psat5g209680 Pisum sativum HOM05D003667 ORTHO05D004397 2.2e-75 286.2 223 68.2
AL8G24670 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 6.4e-75 284.6 220 65.5
Lalb_Chr17g0348151 Lupinus albus HOM05D003667 ORTHO05D004397 1.1e-74 283.9 225 66.7
VMungo0540G2144 Vigna mungo HOM05D003667 ORTHO05D004397 1.4e-74 283.5 215 68.4
Carub.0008s1055 Capsella rubella HOM05D003667 ORTHO05D004397 1.9e-74 283.1 220 65.5
Psat2g018160 Pisum sativum HOM05D003667 ORTHO05D004397 9.2e-74 280.8 225 65.3
AT5G50440 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 1.2e-73 280.4 220 64.5
Ca_06238_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 2.7e-73 279.3 225 66.7
Thhalv10014611m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 4.6e-73 278.5 221 63.8
TPR.G14738 Trifolium pratense HOM05D003667 ORTHO05D004397 6.0e-73 278.1 223 67.7
Migut.L01870 Erythranthe guttata HOM05D003667 ORTHO05D004397 6.6e-72 274.6 232 63.4
Zm00001eb052810 Zea mays HOM05D003667 ORTHO05D004397 1.6e-70 270.0 228 61.4
SEGI_40073 Sequoiadendron giganteum HOM05D003667 ORTHO05D004397 8.1e-70 267.7 231 58.9
Os03g0655200 Oryza sativa ssp. japonica HOM05D003667 ORTHO05D004397 4.0e-69 265.4 231 59.3
Cc03_g11050 Coffea canephora HOM05D003667 ORTHO05D004397 7.6e-68 261.2 224 61.2
HPP92_027259 Vanilla planifolia HOM05D003667 ORTHO05D004397 7.6e-68 261.2 198 67.7
Lsat_1_v5_gn_6_31701 Lactuca sativa HOM05D003667 ORTHO05D004397 2.9e-67 259.2 221 60.2
HanXRQChr14g0453611 Helianthus annuus HOM05D003667 ORTHO05D004397 3.8e-67 258.8 221 61.5
SGA_v2.0_scaffold41G15803 Striga asiatica HOM05D003667 ORTHO05D004397 8.4e-67 257.7 277 53.8
Mapoly0001s0234 Marchantia polymorpha HOM05D003667 ORTHO05D004397 1.4e-66 256.9 218 59.6
SMO358G0442 Selaginella moellendorffii HOM05D003667 ORTHO05D004397 3.2e-66 255.8 229 58.5
Peaxi162Scf00776g00027 Petunia axillaris HOM05D003667 ORTHO05D004397 2.1e-65 253.1 224 59.4
unitig_8.g4943 Utricularia gibba HOM05D003667 ORTHO05D004397 2.7e-65 252.7 222 59.9
SGA_v2.0_scaffold392G50657 Striga asiatica HOM05D003667 ORTHO05D004397 2.3e-64 249.6 253 55.7
Dinv05568 Davidia involucrata HOM05D003667 ORTHO05D004397 9.6e-63 244.2 167 73.1
Lsat_1_v5_gn_2_103600 Lactuca sativa HOM05D003667 ORTHO05D004397 1.1e-61 240.7 217 58.1
DCAR_013483 Daucus carota HOM05D003667 ORTHO05D004397 7.6e-60 234.6 163 73.0
Sc01g0006150 Simmondsia chinensis HOM05D003667 ORTHO05D004397 4.2e-58 228.8 171 67.8
Pp3c7_13000 Physcomitrium patens HOM05D003667 ORTHO05D004397 4.6e-57 225.3 249 47.4
AUR62008662 Chenopodium quinoa HOM05D003667 ORTHO05D004397 1.3e-56 223.8 218 55.0
Prupe.7G022400 Prunus persica HOM05D003667 ORTHO05D004397 1.3e-56 223.8 161 73.3
Pp3c11_11980 Physcomitrium patens HOM05D003667 ORTHO05D004397 2.3e-56 223.0 242 49.2
EL10Ac7g17477 Beta vulgaris HOM05D003667 ORTHO05D004397 1.9e-55 219.9 219 54.8
BcaC02g11814 Brassica carinata HOM05D003667 ORTHO05D004397 3.3e-55 219.2 163 66.9
CiPaw.04G007600 Carya illinoinensis HOM05D003667 ORTHO05D004397 2.1e-54 216.5 159 71.7
ECA238G3478 Erigeron canadensis HOM05D003667 ORTHO05D004397 4.8e-54 215.3 221 52.5
Ah.02g128310 Amaranthus hybridus HOM05D003667 ORTHO05D004397 2.2e-51 206.5 168 63.7
Lj6g0022641 Lotus japonicus HOM05D003667 ORTHO05D004397 5.5e-50 201.8 152 67.8
Rhsim02G0195900 Rhododendron simsii HOM05D003667 ORTHO05D004397 5.5e-50 201.8 141 73.8
arahy.Tifrunner.gnm1.ann1.B982CP Arachis hypogaea HOM05D003667 ORTHO05D004397 1.6e-49 200.3 225 52.9
CDE10G1036 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 2.1e-46 189.9 219 48.4
Dinv25059 Davidia involucrata HOM05D003667 ORTHO05D004397 4.0e-45 185.7 146 62.3
MSTRG.10431 Avicennia marina HOM05D003667 ORTHO05D004397 1.2e-44 184.1 145 65.5
AagrBONN_evm.TU.Sc2ySwM_117.3822 Anthoceros agrestis HOM05D003667 ORTHO05D004397 4.6e-41 172.2 187 51.3
Nitab4.5_0001701g0060 Nicotiana tabacum HOM05D003667 ORTHO05D004397 6.0e-41 171.8 221 46.6
AagrBONN_evm.TU.Sc2ySwM_362.869 Anthoceros agrestis HOM05D003667 ORTHO05D004397 2.3e-40 169.9 193 49.2
unitig_578.g16057 Utricularia gibba HOM05D003667 ORTHO05D004397 5.1e-40 168.7 206 49.0
Cre12.g554200 Chlamydomonas reinhardtii HOM05D003667 ORTHO05D004397 2.4e-37 159.8 222 44.1
Lalb_Chr10g0106501 Lupinus albus HOM05D003667 ORTHO05D004397 4.5e-36 155.6 113 70.8
Haze_20440 Corylus avellana HOM05D003667 ORTHO05D004397 1.3e-35 154.1 113 69.9
Cfa017699 Carpinus fangiana HOM05D003667 ORTHO05D004397 2.9e-35 152.9 113 68.1
Oeu063104.1 Olea europaea HOM05D003667 ORTHO05D004397 5.0e-35 152.1 230 43.5
Solyc05g040100.4 Solanum lycopersicum HOM05D003667 ORTHO05D004397 1.4e-34 150.6 191 46.6
Oeu003870.1 Olea europaea HOM05D003667 ORTHO05D004397 7.2e-34 148.3 126 65.1
BcaC02g10601 Brassica carinata HOM05D003667 ORTHO05D004397 6.1e-33 145.2 184 47.3
MCO05G601 Micromonas commoda HOM05D003667 ORTHO05D004397 2.3e-32 143.3 217 38.7
CSS0044789 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 6.7e-32 141.7 141 55.3
PRCOL_00002098 Prasinoderma coloniale HOM05D003667 ORTHO05D004397 2.5e-31 139.8 219 38.4
Actinidia03933 Actinidia chinensis HOM05D003667 ORTHO05D004397 3.3e-31 139.4 145 51.7
AagrBONN_evm.TU.Sc2ySwM_368.3326 Anthoceros agrestis HOM05D003667 ORTHO05D004397 2.9e-27 126.3 181 42.5
BcaB06g28959 Brassica carinata HOM05D003667 ORTHO05D004397 3.8e-27 125.9 223 37.7
QL07p048797 Quercus lobata HOM05D000002 ORTHO05D000001 1.9e-26 123.6 184 48.9
Rhsim02G0194700 Rhododendron simsii HOM05D003667 ORTHO05D004397 2.7e-25 119.8 77 76.6
Rhsim02G0195800 Rhododendron simsii HOM05D003667 ORTHO05D004397 2.7e-25 119.8 77 76.6
arahy.Tifrunner.gnm1.ann1.K13S6W Arachis hypogaea HOM05D004599 ORTHO05D005564 1.4e-24 117.5 141 48.2
AUR62033108 Chenopodium quinoa HOM05D003667 ORTHO05D004397 3.0e-24 116.3 90 65.6
arahy.Tifrunner.gnm1.ann1.835HL2 Arachis hypogaea HOM05D004313 ORTHO05D004397 7.4e-23 111.7 93 61.3
Glyma.02G282800 Glycine max HOM05D003667 ORTHO05D004397 9.1e-21 104.8 116 53.4
CSS0038188 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 1.5e-20 104.0 77 70.1
Actinidia37807 Actinidia chinensis HOM05D003667 ORTHO05D004397 5.9e-20 102.1 172 40.1
CAN.G1036.8 Capsicum annuum HOM05D003667 ORTHO05D004397 1.0e-19 101.3 139 43.2
arahy.Tifrunner.gnm1.ann1.SJAT5A Arachis hypogaea HOM05D003667 ORTHO05D003672 2.9e-19 99.8 152 42.1
arahy.Tifrunner.gnm1.ann1.SS7A45 Arachis hypogaea HOM05D000726 ORTHO05D004397 5.0e-19 99.0 127 48.0
C04p25660 Brassica napus HOM05D003667 ORTHO05D004397 1.1e-18 97.8 203 36.0
C05p50890 Brassica napus HOM05D003667 ORTHO05D004397 1.1e-18 97.8 203 36.0
CBR_g20321 Chara braunii HOM05D003667 ORTHO05D004397 1.9e-18 97.1 106 50.0
FAN16G1288 Fragaria x ananassa HOM05D003667 ORTHO05D004397 7.2e-18 95.1 58 82.8
Nitab4.5_0002669g0010 Nicotiana tabacum HOM05D003667 ORTHO05D004397 7.2e-18 95.1 93 54.8
Lalb_Chr10g0106511 Lupinus albus HOM05D003667 ORTHO05D004397 3.6e-17 92.8 83 60.2
arahy.Tifrunner.gnm1.ann1.X6I371 Arachis hypogaea HOM05D003667 ORTHO05D004397 3.0e-16 89.7 87 56.3
BolC4t28047H Brassica oleracea HOM05D003667 ORTHO05D004397 2.6e-15 86.7 53 75.5
VMungo0720G0063 Vigna mungo HOM05D003667 ORTHO05D004397 5.7e-15 85.5 72 59.7
BraA04t18306Z Brassica rapa HOM05D003667 ORTHO05D004397 7.4e-15 85.1 52 75.0
Ah.08g213160 Amaranthus hybridus HOM05D003667 ORTHO05D004397 2.2e-14 83.6 70 61.4
A04p28220 Brassica napus HOM05D003667 ORTHO05D004397 2.2e-14 83.6 53 73.6
C04p65580 Brassica napus HOM05D003667 ORTHO05D004397 2.2e-14 83.6 53 73.6
Ah.08g213170 Amaranthus hybridus HOM05D003667 ORTHO05D004397 2.8e-14 83.2 78 53.8
TPR.G36075 Trifolium pratense HOM05D003667 ORTHO05D004397 2.8e-14 83.2 53 77.4
BNapus_Darmor_BZH_scaffold_271p00010 Brassica napus HOM05D003667 ORTHO05D004397 4.8e-14 82.4 192 33.9
AUR62033107 Chenopodium quinoa HOM05D003667 ORTHO05D004397 8.2e-14 81.6 118 45.8
Solyc05g040090.1 Solanum lycopersicum HOM05D003667 ORTHO05D004397 2.0e-12 77.0 84 51.2
HanXRQChr04g0115761 Helianthus annuus HOM05D003667 ORTHO05D004397 7.2e-10 68.6 52 71.2
FvH4_3g32534 Fragaria vesca HOM05D003667 ORTHO05D004397 1.0e-08 64.7 55 63.6
COL.COLO4_28622 Corchorus olitorius HOM05D003667 ORTHO05D004397 1.4e-08 64.3 77 49.4
MD05G1212000 Malus domestica HOM05D003667 ORTHO05D246792 5.7e-07 58.9 41 68.3


User provided reference genes

Program Settings