Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0016616 Sechium edule HOM05D003701 ORTHO05D004771 1.0e-246 856.3 440 100.0
MELO3C019790.2 Cucumis melo HOM05D003701 ORTHO05D004771 1.0e-230 803.1 440 93.4
ClCG08G007450 Citrullus lanatus HOM05D003701 ORTHO05D004771 5.2e-230 800.8 440 93.0
CsaV3_6G036360 Cucumis sativus L. HOM05D003701 ORTHO05D004771 5.2e-230 800.8 440 93.0
Thecc.10G072600 Theobroma cacao HOM05D003701 ORTHO05D004771 1.9e-195 686.0 427 79.6
CANSAT56G3258 Cannabis sativa HOM05D003701 ORTHO05D004771 3.2e-195 685.3 430 79.5
VMungo0720G1162 Vigna mungo HOM05D003701 ORTHO05D004771 1.2e-194 683.3 438 77.9
Duzib106G0278 Durio zibethinus HOM05D003701 ORTHO05D004771 2.1e-194 682.6 436 77.8
Gohir.A10G206500 Gossypium hirsutum HOM05D003701 ORTHO05D004771 2.1e-194 682.6 427 79.4
Gohir.D05G297000 Gossypium hirsutum HOM05D003701 ORTHO05D004771 2.1e-194 682.6 427 79.2
Gorai.009G314200 Gossypium raimondii HOM05D003701 ORTHO05D004771 2.1e-194 682.6 427 79.2
Gohir.A05G297100 Gossypium hirsutum HOM05D003701 ORTHO05D004771 7.8e-194 680.6 427 78.7
Atru.chr12.740 Acer truncatum HOM05D003701 ORTHO05D004771 1.3e-193 679.9 434 78.8
Gohir.D10G214600 Gossypium hirsutum HOM05D003701 ORTHO05D004771 1.3e-193 679.9 427 79.2
Ciclev10031547m.g Citrus clementina HOM05D003701 ORTHO05D004771 1.7e-193 679.5 426 80.5
arahy.Tifrunner.gnm1.ann1.X76XU5 Arachis hypogaea HOM05D003701 ORTHO05D004771 3.9e-193 678.3 437 77.8
Glyma.20G179500 Glycine max HOM05D003701 ORTHO05D004771 3.3e-192 675.2 430 77.7
arahy.Tifrunner.gnm1.ann1.V7IKH4 Arachis hypogaea HOM05D003701 ORTHO05D004771 4.3e-192 674.9 432 78.2
Potri.010G221600 Populus trichocarpa HOM05D003701 ORTHO05D004771 4.3e-192 674.9 440 78.2
CiPaw.02G174300 Carya illinoinensis HOM05D003701 ORTHO05D004771 9.6e-192 673.7 442 78.5
FAN03G0046 Fragaria x ananassa HOM05D003701 ORTHO05D004771 8.1e-191 670.6 437 78.7
Ca_10573_v3 Cicer arietinum L. HOM05D003701 ORTHO05D004771 1.1e-190 670.2 436 76.4
Ca_29596_v3 Cicer arietinum L. HOM05D003701 ORTHO05D004771 1.1e-190 670.2 436 76.4
FAN10G2919 Fragaria x ananassa HOM05D003701 ORTHO05D004771 1.4e-190 669.8 437 78.7
Glyma.10G211400 Glycine max HOM05D003701 ORTHO05D004771 1.8e-190 669.5 430 76.7
MD01G1108900 Malus domestica HOM05D003701 ORTHO05D004771 1.8e-190 669.5 427 78.7
FvH4_7g19670 Fragaria vesca HOM05D003701 ORTHO05D004771 2.4e-190 669.1 437 78.7
TWI74G0111 Tripterygium wilfordii HOM05D003701 ORTHO05D004771 2.4e-190 669.1 429 78.3
TWI74G0263 Tripterygium wilfordii HOM05D003701 ORTHO05D004771 2.4e-190 669.1 429 78.3
MD07G1175200 Malus domestica HOM05D003701 ORTHO05D004771 6.9e-190 667.5 426 79.1
Manes.10G045200 Manihot esculenta HOM05D003701 ORTHO05D004771 6.9e-190 667.5 429 77.6
THA.LOC104827296 Tarenaya hassleriana HOM05D003701 ORTHO05D004771 6.9e-190 667.5 427 78.9
TPR.G1904 Trifolium pratense HOM05D003701 ORTHO05D004771 6.9e-190 667.5 436 77.3
FAN06G0474 Fragaria x ananassa HOM05D003701 ORTHO05D004771 9.0e-190 667.2 430 79.1
TAR633G1876 Trochodendron aralioides HOM05D003701 ORTHO05D004771 2.6e-189 665.6 441 76.6
Medtr1g095250 Medicago truncatula HOM05D003701 ORTHO05D004771 5.8e-189 664.5 440 75.7
Hund12041 Selenicereus undatus HOM05D003701 ORTHO05D004771 9.9e-189 663.7 432 77.1
TAR623G1268 Trochodendron aralioides HOM05D003701 ORTHO05D004771 1.7e-188 662.9 430 78.6
MBI10_g04889_MAGBIO Magnolia biondii HOM05D003701 ORTHO05D004771 2.2e-188 662.5 443 75.8
Sabra08G0027700 Salix brachista HOM05D003701 ORTHO05D004771 2.2e-188 662.5 446 77.4
Potri.008G040700 Populus trichocarpa HOM05D003701 ORTHO05D004771 4.9e-188 661.4 441 77.3
RcHm_v2.0_Chr1g0363491 Rosa chinensis HOM05D003701 ORTHO05D004771 4.9e-188 661.4 429 79.0
Lj5g0008768 Lotus japonicus HOM05D003701 ORTHO05D004771 6.4e-188 661.0 436 76.6
Phvul.007G094200 Phaseolus vulgaris HOM05D003701 ORTHO05D004771 6.4e-188 661.0 427 76.6
Sp1g35740 Schrenkiella parvula HOM05D003701 ORTHO05D004771 1.4e-187 659.8 432 76.6
BcaB02g11304 Brassica carinata HOM05D003701 ORTHO05D004771 2.4e-187 659.1 432 76.4
A08p04400 Brassica napus HOM05D003701 ORTHO05D004771 2.4e-187 659.1 432 76.6
BolC8t47272H Brassica oleracea HOM05D003701 ORTHO05D004771 2.4e-187 659.1 432 76.6
BcaC07g37102 Brassica carinata HOM05D003701 ORTHO05D004771 4.2e-187 658.3 432 76.6
C08p04710 Brassica napus HOM05D003701 ORTHO05D004771 4.2e-187 658.3 432 76.6
BraA08t32466Z Brassica rapa HOM05D003701 ORTHO05D004771 5.4e-187 657.9 432 76.4
BcaB04g17381 Brassica carinata HOM05D003701 ORTHO05D004771 1.2e-186 656.8 432 76.6
Thhalv10011486m.g Eutrema salsugineum HOM05D003701 ORTHO05D004771 2.1e-186 656.0 432 76.2
AL1G55580 Arabidopsis lyrata HOM05D003701 ORTHO05D004771 4.6e-186 654.8 429 76.5
GSVIVG01016288001 Vitis vinifera HOM05D003701 ORTHO05D004771 7.8e-186 654.1 429 76.7
BcaC05g27549 Brassica carinata HOM05D003701 ORTHO05D004771 1.0e-185 653.7 432 75.9
C05p35350 Brassica napus HOM05D003701 ORTHO05D004771 1.0e-185 653.7 432 75.9
BolC5t32248H Brassica oleracea HOM05D003701 ORTHO05D004771 1.0e-185 653.7 432 75.9
Dinv11780 Davidia involucrata HOM05D003701 ORTHO05D004771 1.7e-185 652.9 438 76.0
Carub.0001s3800 Capsella rubella HOM05D003701 ORTHO05D004771 2.3e-185 652.5 429 76.2
Eucgr.G02824 Eucalyptus grandis HOM05D003701 ORTHO05D004771 2.3e-185 652.5 432 76.4
QL08p056106 Quercus lobata HOM05D003701 ORTHO05D004771 3.9e-185 651.7 426 78.2
Lalb_Chr06g0162271 Lupinus albus HOM05D003701 ORTHO05D004771 5.1e-185 651.4 435 75.6
Sc09g0006470 Simmondsia chinensis HOM05D003701 ORTHO05D004771 5.1e-185 651.4 441 75.7
MBI02_g43493_MAGBIO Magnolia biondii HOM05D003701 ORTHO05D004771 6.6e-185 651.0 429 76.2
Sc06g0004590 Simmondsia chinensis HOM05D003701 ORTHO05D004771 6.6e-185 651.0 429 76.9
A05p20860 Brassica napus HOM05D003701 ORTHO05D004771 8.7e-185 650.6 432 75.7
BraA05t20991Z Brassica rapa HOM05D003701 ORTHO05D004771 8.7e-185 650.6 432 75.7
AT1G48850 Arabidopsis thaliana HOM05D003701 ORTHO05D004771 1.1e-184 650.2 428 76.2
CARHR038850 Cardamine hirsuta HOM05D003701 ORTHO05D004771 1.1e-184 650.2 432 75.2
CSS0025729 Camellia sinensis var. sinensis HOM05D003701 ORTHO05D004771 7.3e-184 647.5 441 75.1
Gorai.011G240100 Gossypium raimondii HOM05D003701 ORTHO05D004771 1.3e-183 646.7 427 75.2
Sabra10G0171500 Salix brachista HOM05D003701 ORTHO05D004771 1.3e-183 646.7 489 69.9
Cpa.g.sc53.71 Carica papaya HOM05D003701 ORTHO05D004771 2.1e-183 646.0 449 74.4
Lalb_Chr02g0142141 Lupinus albus HOM05D003701 ORTHO05D004771 2.1e-183 646.0 433 75.5
Gorai.011G240200 Gossypium raimondii HOM05D003701 ORTHO05D004771 4.8e-183 644.8 388 81.4
Nn2g13085 Nelumbo nucifera HOM05D003701 ORTHO05D004771 4.8e-183 644.8 430 75.3
CDE04G2332 Ceratophyllum demersum HOM05D003701 ORTHO05D004771 3.1e-182 642.1 438 74.7
FAN01G1080 Fragaria x ananassa HOM05D003701 ORTHO05D004771 4.0e-182 641.7 476 71.4
ATR0115G006 Amborella trichopoda HOM05D003701 ORTHO05D004771 5.3e-182 641.3 441 73.7
Ah.06g192010 Amaranthus hybridus HOM05D003701 ORTHO05D004771 6.9e-182 641.0 429 75.1
Gohir.A10G206400 Gossypium hirsutum HOM05D003701 ORTHO05D004771 9.0e-182 640.6 427 74.0
arahy.Tifrunner.gnm1.ann1.6FL4NC Arachis hypogaea HOM05D003701 ORTHO05D004771 2.6e-181 639.0 434 74.2
Hma1.2p1_1004F.1_g246800 Hydrangea macrophylla HOM05D003701 ORTHO05D004771 4.5e-181 638.3 430 75.6
Lsat_1_v5_gn_2_114381 Lactuca sativa HOM05D003701 ORTHO05D004771 7.6e-181 637.5 430 76.5
FAN10G2344 Fragaria x ananassa HOM05D003701 ORTHO05D004771 9.9e-181 637.1 437 76.2
DCAR_015315 Daucus carota HOM05D003701 ORTHO05D004771 1.3e-180 636.7 433 75.8
PSO339G3023 Papaver somniferum HOM05D003701 ORTHO05D004771 1.7e-180 636.3 427 75.6
Sopen04g019270 Solanum pennellii HOM05D003701 ORTHO05D004771 2.2e-180 636.0 438 73.1
Aa31LG10G4830 Aethionema arabicum HOM05D003701 ORTHO05D004771 2.9e-180 635.6 440 72.5
Solyc04g049350.4 Solanum lycopersicum HOM05D003701 ORTHO05D004771 3.8e-180 635.2 438 73.1
AUR62041045 Chenopodium quinoa HOM05D003701 ORTHO05D004771 4.9e-180 634.8 429 75.8
HanXRQChr09g0249701 Helianthus annuus HOM05D003701 ORTHO05D004771 6.4e-180 634.4 436 74.3
PSO063G5795 Papaver somniferum HOM05D003701 ORTHO05D004771 8.4e-180 634.0 427 75.4
Aqoxy1G01249 Aquilegia oxysepala HOM05D003701 ORTHO05D004771 1.4e-179 633.3 423 75.7
PGSC0003DMG400024392 Solanum tuberosum HOM05D003701 ORTHO05D004771 1.4e-179 633.3 439 74.5
MSTRG.8153 Avicennia marina HOM05D003701 ORTHO05D004771 3.2e-179 632.1 442 73.1
Nitab4.5_0005490g0010 Nicotiana tabacum HOM05D003701 ORTHO05D004771 9.3e-179 630.6 437 73.7
Peaxi162Scf00747g00122 Petunia axillaris HOM05D003701 ORTHO05D004771 9.3e-179 630.6 430 75.1
Lj1A914T43 Lonicera japonica HOM05D003701 ORTHO05D004771 1.2e-178 630.2 426 75.4
HanXRQChr15g0496661 Helianthus annuus HOM05D003701 ORTHO05D004771 3.5e-178 628.6 443 73.1
AUR62037661 Chenopodium quinoa HOM05D003701 ORTHO05D004771 6.0e-178 627.9 449 72.6
Migut.F01774 Erythranthe guttata HOM05D003701 ORTHO05D004771 1.3e-177 626.7 442 72.4
PGR142G1908 Punica granatum HOM05D003701 ORTHO05D004771 1.8e-177 626.3 427 74.9
MSTRG.367 Avicennia marina HOM05D003701 ORTHO05D004771 3.0e-177 625.5 442 71.7
ECA232G2521 Erigeron canadensis HOM05D003701 ORTHO05D004771 1.1e-176 623.6 430 75.8
PGSC0003DMG400016016 Solanum tuberosum HOM05D003701 ORTHO05D004771 4.3e-176 621.7 441 72.1
Sopen04g004770 Solanum pennellii HOM05D003701 ORTHO05D004771 7.4e-176 620.9 435 72.0
SGA_v2.0_scaffold51G18675 Striga asiatica HOM05D003701 ORTHO05D004771 2.1e-175 619.4 439 72.0
Actinidia38848 Actinidia chinensis HOM05D003701 ORTHO05D004771 2.8e-175 619.0 430 73.3
Duzib114G1041 Durio zibethinus HOM05D003701 ORTHO05D004771 3.7e-175 618.6 431 72.9
Solyc04g009620.4 Solanum lycopersicum HOM05D003701 ORTHO05D004771 4.8e-175 618.2 435 72.0
CAN.G186.45 Capsicum annuum HOM05D003701 ORTHO05D004771 8.1e-175 617.5 429 73.0
EL10Ac2g03249 Beta vulgaris HOM05D003701 ORTHO05D004771 5.3e-174 614.8 429 73.4
HPP92_012666 Vanilla planifolia HOM05D003701 ORTHO05D004771 5.3e-174 614.8 426 72.8
Os03g0254800 Oryza sativa ssp. japonica HOM05D003701 ORTHO05D004771 4.5e-173 611.7 427 72.1
Nitab4.5_0001029g0070 Nicotiana tabacum HOM05D003701 ORTHO05D004771 4.9e-172 608.2 465 69.0
Gohir.D05G297025 Gossypium hirsutum HOM05D003701 ORTHO05D004771 1.9e-171 606.3 429 72.0
vmacro04876 Vaccinium macrocarpon HOM05D003701 ORTHO05D004771 4.2e-171 605.1 544 60.7
Rhsim09G0152400 Rhododendron simsii HOM05D003701 ORTHO05D004771 5.5e-171 604.7 506 64.2
CSS0011231 Camellia sinensis var. sinensis HOM05D003701 ORTHO05D004771 3.9e-169 598.6 430 71.4
Actinidia03057 Actinidia chinensis HOM05D003701 ORTHO05D004771 8.7e-169 597.4 429 72.0
SEGI_31492 Sequoiadendron giganteum HOM05D003701 ORTHO05D004771 2.5e-168 595.9 436 70.4
unitig_899.g14441 Utricularia gibba HOM05D003701 ORTHO05D004771 3.3e-168 595.5 437 70.5
SalBow4G1339 Salvia bowleyana HOM05D003701 ORTHO05D004771 6.9e-166 587.8 392 74.0
AagrBONN_evm.TU.Sc2ySwM_369.393 Anthoceros agrestis HOM05D003701 ORTHO05D004771 2.2e-164 582.8 397 74.3
SMO146G0105 Selaginella moellendorffii HOM05D003701 ORTHO05D004771 1.1e-163 580.5 413 71.2
Prupe.2G214400 Prunus persica HOM05D003701 ORTHO05D004771 1.4e-163 580.1 362 79.6
Mapoly0007s0052 Marchantia polymorpha HOM05D003701 ORTHO05D004771 2.7e-162 575.9 406 72.7
DCAR_012659 Daucus carota HOM05D003701 ORTHO05D004771 4.6e-162 575.1 379 74.7
Migut.F01773 Erythranthe guttata HOM05D003701 ORTHO05D004771 1.0e-161 573.9 385 73.0
arahy.Tifrunner.gnm1.ann1.914CGH Arachis hypogaea HOM05D003701 ORTHO05D004771 1.1e-160 570.5 342 80.7
CAN.G186.44 Capsicum annuum HOM05D003701 ORTHO05D004771 4.3e-160 568.5 385 71.9
GSVIVG01025176001 Vitis vinifera HOM05D003701 ORTHO05D004771 2.2e-159 566.2 434 66.4
Psat6g184400 Pisum sativum HOM05D003701 ORTHO05D004771 6.3e-159 564.7 362 77.3
CiPaw.01G273500 Carya illinoinensis HOM05D003701 ORTHO05D004771 3.8e-156 555.4 350 80.6
CANSAT78G2428 Cannabis sativa HOM05D003701 ORTHO05D004771 1.5e-149 533.5 389 68.9
Zm00001eb011020 Zea mays HOM05D003701 ORTHO05D004771 1.4e-145 520.4 365 72.6
Oeu027479.1 Olea europaea HOM05D003701 ORTHO05D004771 5.7e-144 515.0 344 75.9
MCO05G587 Micromonas commoda HOM05D003701 ORTHO05D004771 3.1e-142 509.2 371 68.5
Oeu007390.4 Olea europaea HOM05D003701 ORTHO05D004771 9.1e-142 507.7 335 75.2
CDE07G1562 Ceratophyllum demersum HOM05D003701 ORTHO05D004771 3.5e-141 505.8 438 62.6
Cre03.g145747 Chlamydomonas reinhardtii HOM05D003701 ORTHO05D004771 4.5e-141 505.4 371 69.5
Dinv31329 Davidia involucrata HOM05D003701 ORTHO05D004771 5.5e-139 498.4 337 75.4
PRCOL_00001179 Prasinoderma coloniale HOM05D003701 ORTHO05D004771 6.1e-138 495.0 393 66.4
unitig_736.g22517 Utricularia gibba HOM05D003701 ORTHO05D004771 2.8e-135 486.1 425 60.9
Eucgr.J01090 Eucalyptus grandis HOM05D003701 ORTHO05D004771 9.1e-134 481.1 346 72.0
COL.COLO4_23690 Corchorus olitorius HOM05D003701 ORTHO05D004771 1.3e-124 450.7 261 81.6
Zm00001eb398410 Zea mays HOM05D003701 ORTHO05D004771 3.8e-124 449.1 329 68.1
Pp3c1_35940 Physcomitrium patens HOM05D003701 ORTHO05D004771 4.0e-113 412.5 271 74.5
COL.COLO4_23691 Corchorus olitorius HOM05D003701 ORTHO05D004771 2.8e-111 406.4 256 80.1
CBR_g41627 Chara braunii HOM05D003701 ORTHO05D004771 7.3e-107 391.7 371 57.1
Haze_16899 Corylus avellana HOM05D003701 ORTHO05D004771 1.9e-99 367.1 228 81.1
Gohir.D10G214532 Gossypium hirsutum HOM05D003701 ORTHO05D004771 2.1e-93 347.1 243 70.8
Cc09_g02030 Coffea canephora HOM05D003701 ORTHO05D004771 4.9e-87 325.9 232 70.7
Haze_27259 Corylus avellana HOM05D003701 ORTHO05D004771 3.3e-83 313.2 365 46.6
Cfa022484 Carpinus fangiana HOM05D003701 ORTHO05D004771 8.4e-79 298.5 355 48.5
Gohir.D10G214466 Gossypium hirsutum HOM05D003701 ORTHO05D004771 3.2e-78 296.6 180 80.6
Cc09_g02040 Coffea canephora HOM05D003701 ORTHO05D004771 4.2e-78 296.2 182 80.8
SHI12194 Sapria himalayana HOM05D003666 ORTHO05D004770 1.7e-68 264.2 154 80.5
RcHm_v2.0_Chr4g0427911 Rosa chinensis HOM05D003701 ORTHO05D004771 1.3e-63 248.1 221 64.3
TAR636G0034 Trochodendron aralioides HOM05D003701 ORTHO05D004771 4.3e-59 233.0 186 61.3
TAR636G0416 Trochodendron aralioides HOM05D003701 ORTHO05D004771 4.3e-59 233.0 186 61.3
MSTRG.366 Avicennia marina HOM05D003701 ORTHO05D004771 4.0e-57 226.5 146 76.0
FAN12G0728 Fragaria x ananassa HOM05D003701 ORTHO05D004771 6.5e-55 219.2 244 55.3
MD01G1109200 Malus domestica HOM05D003701 ORTHO05D004771 2.3e-44 184.1 157 64.3
Glyma.14G185633 Glycine max HOM05D003701 ORTHO05D004771 4.8e-42 176.4 99 85.9
FAN17G1952 Fragaria x ananassa HOM05D003701 ORTHO05D004771 8.5e-39 165.6 294 41.8
SMO173G0015 Selaginella moellendorffii HOM05D003701 ORTHO05D004771 5.9e-32 142.9 220 46.4
QL07p006097 Quercus lobata HOM05D003701 ORTHO05D030296 8.8e-28 129.0 82 79.3
VMungo0647G0194 Vigna mungo HOM05D003701 ORTHO05D432816 2.3e-20 104.4 89 64.0
Oeu052763.1 Olea europaea HOM05D003701 ORTHO05D030296 1.5e-19 101.7 60 81.7
FAN01G1877 Fragaria x ananassa HOM05D003701 ORTHO05D208017 5.7e-19 99.8 79 68.4
FAN12G0587 Fragaria x ananassa HOM05D003701 ORTHO05D004771 7.5e-19 99.4 90 57.8
QL07p006183 Quercus lobata HOM05D003701 ORTHO05D030296 1.1e-17 95.5 59 81.4
QL09p045974 Quercus lobata HOM05D003701 ORTHO05D030296 1.1e-17 95.5 59 81.4
Medtr0368s0020 Medicago truncatula HOM05D003701 ORTHO05D026922 2.9e-15 87.4 48 83.3
Glyma.14G185666 Glycine max HOM05D003701 ORTHO05D026922 1.5e-14 85.1 50 80.0
Oeu043945.1 Olea europaea HOM05D003701 ORTHO05D004771 2.7e-13 80.9 46 80.4
CBR_g74262 Chara braunii HOM05D003701 ORTHO05D004771 1.0e-07 62.4 43 69.8
Rhsim05G0028600 Rhododendron simsii HOM05D000745 ORTHO05D000641 6.5e-07 59.7 28 89.3
C02p38530 Brassica napus HOM05D003701 ORTHO05D101262 7.2e-06 56.2 73 45.2


User provided reference genes

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