Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0016602 Sechium edule HOM05D001128 ORTHO05D000721 2.8e-183 645.2 332 100.0
ClCG07G003770 Citrullus lanatus HOM05D001128 ORTHO05D000721 3.5e-77 292.7 397 47.9
MELO3C026566.2 Cucumis melo HOM05D001128 ORTHO05D000721 1.3e-71 274.2 396 48.2
Sed0015993 Sechium edule HOM05D001128 ORTHO05D000721 5.5e-67 258.8 401 45.1
CsaV3_5G008580 Cucumis sativus L. HOM05D001128 ORTHO05D000721 2.0e-64 250.4 396 46.0
COL.COLO4_25581 Corchorus olitorius HOM05D001128 ORTHO05D000721 1.4e-30 137.9 309 37.5
QL08p062120 Quercus lobata HOM05D001128 ORTHO05D000721 1.9e-30 137.5 374 35.3
Thecc.10G030500 Theobroma cacao HOM05D001128 ORTHO05D000721 4.2e-30 136.3 367 34.9
Potri.010G195800 Populus trichocarpa HOM05D001128 ORTHO05D000721 1.1e-27 128.3 327 36.1
Prupe.2G243200 Prunus persica HOM05D001128 ORTHO05D000721 3.3e-27 126.7 378 33.6
Cpa.g.sc19.247 Carica papaya HOM05D001128 ORTHO05D000721 9.6e-27 125.2 364 34.9
CANSAT56G3374 Cannabis sativa HOM05D001128 ORTHO05D000721 2.1e-26 124.0 392 33.7
Duzib128G2050 Durio zibethinus HOM05D001128 ORTHO05D000721 4.0e-25 119.8 305 34.4
Phvul.001G238700 Phaseolus vulgaris HOM05D001128 ORTHO05D000721 4.0e-25 119.8 349 32.4
Haze_17155 Corylus avellana HOM05D001128 ORTHO05D000721 9.0e-25 118.6 311 36.0
Sabra10G0150300 Salix brachista HOM05D001128 ORTHO05D000721 9.0e-25 118.6 327 35.2
Lj1A946G35 Lonicera japonica HOM05D001128 ORTHO05D000721 1.2e-24 118.2 257 39.7
Duzib106G0526 Durio zibethinus HOM05D001128 ORTHO05D000721 1.7e-23 114.4 299 34.1
CiPaw.02G188400 Carya illinoinensis HOM05D001128 ORTHO05D000721 4.9e-23 112.8 377 31.6
Dinv16282 Davidia involucrata HOM05D001128 ORTHO05D000721 1.1e-22 111.7 317 34.4
Manes.07G123000 Manihot esculenta HOM05D001128 ORTHO05D000721 1.1e-22 111.7 330 33.6
Lj6g0007644 Lotus japonicus HOM05D001128 ORTHO05D000721 2.4e-22 110.5 382 31.9
Potri.008G062200 Populus trichocarpa HOM05D001128 ORTHO05D000721 2.4e-22 110.5 327 34.6
Cfa001394 Carpinus fangiana HOM05D001128 ORTHO05D000721 3.2e-22 110.2 310 34.2
RcHm_v2.0_Chr1g0368901 Rosa chinensis HOM05D001128 ORTHO05D000721 7.1e-22 109.0 371 30.7
CiPaw.01G293700 Carya illinoinensis HOM05D001128 ORTHO05D000721 9.3e-22 108.6 383 31.9
Glyma.18G031800 Glycine max HOM05D001128 ORTHO05D000721 2.7e-21 107.1 385 28.8
Dinv34448 Davidia involucrata HOM05D001128 ORTHO05D000721 3.5e-21 106.7 296 34.8
Glyma.14G063900 Glycine max HOM05D001128 ORTHO05D000721 4.6e-21 106.3 301 33.2
Sabra08G0045800 Salix brachista HOM05D001128 ORTHO05D000721 4.6e-21 106.3 325 33.2
Gohir.D10G238700 Gossypium hirsutum HOM05D001128 ORTHO05D000721 7.8e-21 105.5 291 34.7
Medtr5g081460 Medicago truncatula HOM05D001128 ORTHO05D000721 1.0e-20 105.1 300 32.3
Lalb_Chr18g0052901 Lupinus albus HOM05D001128 ORTHO05D000721 1.3e-20 104.8 342 34.2
Gohir.A10G226400 Gossypium hirsutum HOM05D001128 ORTHO05D000721 1.7e-20 104.4 295 33.9
Lj1A945T19 Lonicera japonica HOM05D001128 ORTHO05D000721 1.7e-20 104.4 292 35.6
MD01G1142200 Malus domestica HOM05D001128 ORTHO05D000721 1.7e-20 104.4 395 30.1
FvH4_7g23630 Fragaria vesca HOM05D001128 ORTHO05D000721 2.3e-20 104.0 364 30.8
Glyma.02G252700 Glycine max HOM05D001128 ORTHO05D000721 2.3e-20 104.0 304 33.2
LjContig00141g0001836 Lotus japonicus HOM05D001128 ORTHO05D000721 2.3e-20 104.0 309 34.3
Phvul.008G228300 Phaseolus vulgaris HOM05D001128 ORTHO05D000721 3.9e-20 103.2 305 33.1
arahy.Tifrunner.gnm1.ann1.1NAQ44 Arachis hypogaea HOM05D001128 ORTHO05D000721 5.1e-20 102.8 292 32.5
Gorai.011G274600 Gossypium raimondii HOM05D001128 ORTHO05D000721 5.1e-20 102.8 297 33.3
Psat2g036720 Pisum sativum HOM05D001128 ORTHO05D000721 5.1e-20 102.8 295 30.5
FAN03G2145 Fragaria x ananassa HOM05D001128 ORTHO05D000721 8.7e-20 102.1 356 30.6
VMungo0647G0267 Vigna mungo HOM05D001128 ORTHO05D000721 1.9e-19 100.9 307 31.9
Gohir.D04G065500 Gossypium hirsutum HOM05D001128 ORTHO05D000721 4.3e-19 99.8 282 33.3
vmacro07011 Vaccinium macrocarpon HOM05D001128 ORTHO05D000721 4.3e-19 99.8 303 31.7
Ca_05916_v3 Cicer arietinum L. HOM05D001128 ORTHO05D000721 5.6e-19 99.4 364 29.7
FAN01G1897 Fragaria x ananassa HOM05D001128 ORTHO05D000721 5.6e-19 99.4 364 30.2
Glyma.11G225400 Glycine max HOM05D001128 ORTHO05D000721 5.6e-19 99.4 381 28.3
Lalb_Chr04g0250911 Lupinus albus HOM05D001128 ORTHO05D000721 5.6e-19 99.4 361 32.7
Manes.10G020800 Manihot esculenta HOM05D001128 ORTHO05D000721 5.6e-19 99.4 338 34.3
Actinidia02898 Actinidia chinensis HOM05D001128 ORTHO05D000721 7.3e-19 99.0 328 31.1
Ciclev10031729m.g Citrus clementina HOM05D001128 ORTHO05D000721 7.3e-19 99.0 294 32.7
PGR044G0160 Punica granatum HOM05D001128 ORTHO05D000721 1.6e-18 97.8 304 32.9
arahy.Tifrunner.gnm1.ann1.U326PE Arachis hypogaea HOM05D001128 ORTHO05D000721 6.2e-18 95.9 294 32.3
Gohir.A05G346700 Gossypium hirsutum HOM05D001128 ORTHO05D000721 6.2e-18 95.9 274 33.6
FAN06G2816 Fragaria x ananassa HOM05D001128 ORTHO05D000721 1.1e-17 95.1 274 33.6
Gorai.012G073700 Gossypium raimondii HOM05D001128 ORTHO05D000721 1.1e-17 95.1 282 32.6
VMungo1383G0733 Vigna mungo HOM05D001128 ORTHO05D000721 1.1e-17 95.1 350 30.9
CSS0047983 Camellia sinensis var. sinensis HOM05D001128 ORTHO05D000721 1.8e-17 94.4 235 35.3
FAN06G3577 Fragaria x ananassa HOM05D001128 ORTHO05D000721 3.1e-17 93.6 270 33.3
Nitab4.5_0000243g0040 Nicotiana tabacum HOM05D001128 ORTHO05D000721 5.3e-17 92.8 316 32.0
FAN10G3504 Fragaria x ananassa HOM05D001128 ORTHO05D000721 6.9e-17 92.4 300 32.3
Hma1.2p1_0026F.1_g016650 Hydrangea macrophylla HOM05D001128 ORTHO05D000721 6.9e-17 92.4 333 30.0
Rhsim03G0138400 Rhododendron simsii HOM05D001128 ORTHO05D000721 1.2e-16 91.7 210 35.7
TWI09G0818 Tripterygium wilfordii HOM05D001128 ORTHO05D000721 2.0e-16 90.9 319 32.6
TAR623G0478 Trochodendron aralioides HOM05D001128 ORTHO05D000721 5.8e-16 89.4 308 32.1
MD07G1207900 Malus domestica HOM05D001128 ORTHO05D000721 1.7e-15 87.8 294 32.7
Ca_17132_v3 Cicer arietinum L. HOM05D001128 ORTHO05D000721 2.2e-15 87.4 285 32.6
TWI53G0706 Tripterygium wilfordii HOM05D001128 ORTHO05D000721 2.2e-15 87.4 321 31.5
Eucgr.J00969 Eucalyptus grandis HOM05D001128 ORTHO05D000721 4.9e-15 86.3 305 31.5
THA.LOC104809429 Tarenaya hassleriana HOM05D001128 ORTHO05D000721 4.2e-14 83.2 274 32.8
Lalb_Chr15g0084451 Lupinus albus HOM05D001128 ORTHO05D000721 7.1e-14 82.4 330 30.0
EL10Ac2g04665 Beta vulgaris HOM05D001128 ORTHO05D000721 9.3e-14 82.0 307 29.6
Lalb_Chr10g0104881 Lupinus albus HOM05D001128 ORTHO05D000721 1.2e-13 81.6 298 31.5
MBI05_g02674_MAGBIO Magnolia biondii HOM05D001128 ORTHO05D000721 2.1e-13 80.9 215 33.5
Cc02_g07190 Coffea canephora HOM05D001128 ORTHO05D000721 2.7e-13 80.5 328 28.7
Oeu035129.1 Olea europaea HOM05D001128 ORTHO05D000721 2.7e-13 80.5 210 33.3
THA.LOC104824295 Tarenaya hassleriana HOM05D001128 ORTHO05D000721 2.7e-13 80.5 381 28.3
TAR633G0212 Trochodendron aralioides HOM05D001128 ORTHO05D000721 3.5e-13 80.1 304 30.3
Lalb_Chr17g0346461 Lupinus albus HOM05D001128 ORTHO05D000721 4.6e-13 79.7 289 32.2
Ah.10g036830 Amaranthus hybridus HOM05D001128 ORTHO05D000721 7.9e-13 79.0 300 29.3
arahy.Tifrunner.gnm1.ann1.EVQB8B Arachis hypogaea HOM05D001128 ORTHO05D000721 1.0e-12 78.6 368 27.2
THA.LOC104810062 Tarenaya hassleriana HOM05D001128 ORTHO05D000721 1.8e-12 77.8 300 31.7
arahy.Tifrunner.gnm1.ann1.RKI1B6 Arachis hypogaea HOM05D001128 ORTHO05D000721 3.0e-12 77.0 370 29.7
ATR0210G013 Amborella trichopoda HOM05D001128 ORTHO05D000721 3.9e-12 76.6 318 28.0
PSO384G2375 Papaver somniferum HOM05D001128 ORTHO05D000721 6.7e-12 75.9 306 29.1
Nn2g13535 Nelumbo nucifera HOM05D001128 ORTHO05D000721 1.5e-11 74.7 228 32.9
Atru.chr12.272 Acer truncatum HOM05D001128 ORTHO05D000721 2.5e-11 73.9 143 38.5
PSO339G4622 Papaver somniferum HOM05D001128 ORTHO05D000721 1.3e-10 71.6 314 29.3
Sc11g0007590 Simmondsia chinensis HOM05D001128 ORTHO05D000721 1.3e-10 71.6 352 28.4
Hma1.2p1_0671F.1_g200660 Hydrangea macrophylla HOM05D001128 ORTHO05D000721 1.6e-10 71.2 304 31.2
Nitab4.5_0002822g0050 Nicotiana tabacum HOM05D001128 ORTHO05D000721 1.6e-10 71.2 317 30.0
Manes.07G123100 Manihot esculenta HOM05D001128 ORTHO05D000721 2.8e-10 70.5 261 29.9
SGA_v2.0_scaffold453G51859 Striga asiatica HOM05D001128 ORTHO05D000721 4.8e-10 69.7 246 28.9
Lsat_1_v5_gn_2_116981 Lactuca sativa HOM05D001128 ORTHO05D000721 1.4e-09 68.2 291 29.9
Hund16030 Selenicereus undatus HOM05D001128 ORTHO05D000721 1.4e-09 68.2 308 28.6
Medtr3g069670 Medicago truncatula HOM05D001128 ORTHO05D000721 1.8e-09 67.8 357 29.4
Aqoxy1G00786 Aquilegia oxysepala HOM05D001128 ORTHO05D000721 3.1e-09 67.0 307 28.7
Lsat_1_v5_gn_8_14501 Lactuca sativa HOM05D001128 ORTHO05D000721 4.0e-09 66.6 297 30.0
CSS0030928 Camellia sinensis var. sinensis HOM05D001128 ORTHO05D000721 5.3e-09 66.2 314 29.6
ClCG11G006470 Citrullus lanatus HOM05D001128 ORTHO05D000721 5.3e-09 66.2 307 27.4
TAR636G2726 Trochodendron aralioides HOM05D001128 ORTHO05D000721 5.3e-09 66.2 292 30.8
AUR62022804 Chenopodium quinoa HOM05D001128 ORTHO05D000721 9.0e-09 65.5 281 30.6
Duzib114G0703 Durio zibethinus HOM05D001128 ORTHO05D000721 9.0e-09 65.5 228 31.1
Nn2g11296 Nelumbo nucifera HOM05D001128 ORTHO05D000721 9.0e-09 65.5 226 32.7
vmacro20201 Vaccinium macrocarpon HOM05D001128 ORTHO05D000721 9.0e-09 65.5 192 32.3
Lj3C959G13 Lonicera japonica HOM05D001128 ORTHO05D000721 1.2e-08 65.1 290 27.2
Sc10g0001950 Simmondsia chinensis HOM05D001128 ORTHO05D000721 2.0e-08 64.3 246 29.3
Manes.09G099100 Manihot esculenta HOM05D001128 ORTHO05D000721 2.6e-08 63.9 213 31.5
Nitab4.5_0000008g0230 Nicotiana tabacum HOM05D001128 ORTHO05D000721 2.6e-08 63.9 296 28.4
Actinidia13898 Actinidia chinensis HOM05D001128 ORTHO05D000721 7.6e-08 62.4 272 29.8
Hma1.2p1_0039F.1_g024950 Hydrangea macrophylla HOM05D001128 ORTHO05D000721 7.6e-08 62.4 315 28.9
SGA_v2.0_scaffold94G28557 Striga asiatica HOM05D001128 ORTHO05D000721 7.6e-08 62.4 282 29.1
MSTRG.19049 Avicennia marina HOM05D001128 ORTHO05D000721 2.2e-07 60.8 281 28.8
AUR62012167 Chenopodium quinoa HOM05D001128 ORTHO05D000721 2.9e-07 60.5 210 30.0
COL.COLO4_14683 Corchorus olitorius HOM05D001128 ORTHO05D000721 3.8e-07 60.1 303 27.7
Lsat_1_v5_gn_8_80861 Lactuca sativa HOM05D001128 ORTHO05D000721 3.8e-07 60.1 285 28.1
SHI03582 Sapria himalayana HOM05D001128 ORTHO05D000721 3.8e-07 60.1 293 28.3
Gorai.012G109000 Gossypium raimondii HOM05D001128 ORTHO05D000721 4.9e-07 59.7 211 30.3
MSTRG.5621 Avicennia marina HOM05D001128 ORTHO05D000721 8.4e-07 58.9 215 27.9
HanXRQChr04g0124601 Helianthus annuus HOM05D001128 ORTHO05D000721 8.4e-07 58.9 260 28.5
HPP92_015345 Vanilla planifolia HOM05D001128 ORTHO05D000721 8.4e-07 58.9 234 29.5
MELO3C003199.2 Cucumis melo HOM05D001128 ORTHO05D000721 1.1e-06 58.5 309 26.2
Nitab4.5_0003264g0030 Nicotiana tabacum HOM05D001128 ORTHO05D000721 1.1e-06 58.5 316 26.3
MSTRG.27358 Avicennia marina HOM05D001128 ORTHO05D000721 1.4e-06 58.2 202 31.2
Thecc.05G027900 Theobroma cacao HOM05D001128 ORTHO05D000721 1.4e-06 58.2 216 30.1
Gohir.D09G157200 Gossypium hirsutum HOM05D001128 ORTHO05D000721 1.9e-06 57.8 214 30.4
SalBow1G2079 Salvia bowleyana HOM05D001128 ORTHO05D000721 1.9e-06 57.8 296 26.0
Aa31LG10G10690 Aethionema arabicum HOM05D010817 ORTHO05D000721 2.5e-06 57.4 197 32.0
Gohir.D04G126000 Gossypium hirsutum HOM05D001128 ORTHO05D000721 2.5e-06 57.4 211 29.9
HanXRQChr14g0458491 Helianthus annuus HOM05D001128 ORTHO05D000721 2.5e-06 57.4 308 28.6
CARHR134790 Cardamine hirsuta HOM05D012316 ORTHO05D000721 3.2e-06 57.0 267 29.2
TPR.G11407 Trifolium pratense HOM05D001128 ORTHO05D000721 3.2e-06 57.0 286 29.4
MSTRG.8291 Avicennia marina HOM05D001128 ORTHO05D000721 4.2e-06 56.6 224 31.2
Gohir.A04G086100 Gossypium hirsutum HOM05D001128 ORTHO05D000721 4.2e-06 56.6 211 30.3
CsaV3_4G025740 Cucumis sativus L. HOM05D001128 ORTHO05D000721 5.5e-06 56.2 310 26.5
Nitab4.5_0000119g0370 Nicotiana tabacum HOM05D001128 ORTHO05D000721 5.5e-06 56.2 259 29.0
HPP92_018162 Vanilla planifolia HOM05D001128 ORTHO05D000721 5.5e-06 56.2 204 27.9
HPP92_026966 Vanilla planifolia HOM05D001128 ORTHO05D000721 5.5e-06 56.2 234 29.5
Gorai.006G178800 Gossypium raimondii HOM05D001128 ORTHO05D000721 9.3e-06 55.5 301 27.6
Manes.10G020700 Manihot esculenta HOM05D001128 ORTHO05D000721 9.3e-06 55.5 249 29.7
Rhsim05G0200600 Rhododendron simsii HOM05D001128 ORTHO05D000721 9.3e-06 55.5 256 29.3


User provided reference genes

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