Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0016589 Sechium edule HOM05D007869 ORTHO05D009962 1.0e-168 596.7 297 100.0
CsaV3_6G008420 Cucumis sativus L. HOM05D007869 ORTHO05D009962 2.9e-123 445.7 298 73.8
ClCG06G002380 Citrullus lanatus HOM05D007869 ORTHO05D009962 1.3e-120 436.8 274 78.1
MELO3C022297.2 Cucumis melo HOM05D007869 ORTHO05D009962 4.7e-110 401.7 298 68.5
CiPaw.02G045900 Carya illinoinensis HOM05D007869 ORTHO05D009962 9.9e-84 314.3 271 58.3
Cfa003717 Carpinus fangiana HOM05D007869 ORTHO05D009962 2.9e-83 312.8 277 58.1
Atru.chr5.803 Acer truncatum HOM05D007869 ORTHO05D009962 8.4e-83 311.2 280 57.1
CANSAT56G0171 Cannabis sativa HOM05D007869 ORTHO05D009962 1.6e-81 307.0 275 55.6
Prupe.2G203300 Prunus persica HOM05D007869 ORTHO05D009962 1.6e-81 307.0 280 57.5
Haze_15765 Corylus avellana HOM05D007869 ORTHO05D009962 7.9e-81 304.7 274 56.6
RcHm_v2.0_Chr1g0361741 Rosa chinensis HOM05D007869 ORTHO05D009962 5.1e-80 302.0 285 55.1
Glyma.09G283900 Glycine max HOM05D007869 ORTHO05D009962 4.3e-79 298.9 272 55.5
Glyma.20G001800 Glycine max HOM05D007869 ORTHO05D009962 4.3e-79 298.9 272 55.9
TWI14G0946 Tripterygium wilfordii HOM05D007869 ORTHO05D009962 4.3e-79 298.9 284 53.5
VMungo0251G2255 Vigna mungo HOM05D007869 ORTHO05D009962 4.3e-79 298.9 272 55.1
Phvul.003G003700 Phaseolus vulgaris HOM05D007869 ORTHO05D009962 7.4e-79 298.1 272 54.8
FAN06G2096 Fragaria x ananassa HOM05D007869 ORTHO05D009962 3.7e-78 295.8 277 56.3
Potri.014G108300 Populus trichocarpa HOM05D007869 ORTHO05D009962 4.8e-78 295.4 280 53.2
FAN06G3475 Fragaria x ananassa HOM05D007869 ORTHO05D009962 6.2e-78 295.0 256 58.6
FAN10G0101 Fragaria x ananassa HOM05D007869 ORTHO05D009962 8.2e-78 294.7 282 55.3
Cpa.g.sc57.67 Carica papaya HOM05D007869 ORTHO05D009962 1.8e-77 293.5 273 52.7
Duzib138G0629 Durio zibethinus HOM05D007869 ORTHO05D009962 1.8e-77 293.5 282 53.9
FAN03G1443 Fragaria x ananassa HOM05D007869 ORTHO05D009962 3.1e-77 292.7 291 53.3
FAN03G2169 Fragaria x ananassa HOM05D007869 ORTHO05D009962 3.1e-77 292.7 291 53.3
Ciclev10021277m.g Citrus clementina HOM05D007869 ORTHO05D009962 4.0e-77 292.4 273 57.1
Nn3g18755 Nelumbo nucifera HOM05D007869 ORTHO05D009962 5.3e-77 292.0 280 53.6
Medtr1g038260 Medicago truncatula HOM05D007869 ORTHO05D009962 1.2e-76 290.8 273 53.8
Psat6g099760 Pisum sativum HOM05D007869 ORTHO05D009962 2.0e-76 290.0 294 52.7
Thhalv10009953m.g Eutrema salsugineum HOM05D007869 ORTHO05D009962 3.8e-75 285.8 300 49.3
Lalb_Chr17g0337801 Lupinus albus HOM05D007869 ORTHO05D009962 1.1e-74 284.3 278 54.0
Lalb_Chr04g0258981 Lupinus albus HOM05D007869 ORTHO05D009962 1.4e-74 283.9 281 52.3
Thecc.01G330400 Theobroma cacao HOM05D007869 ORTHO05D009962 1.9e-74 283.5 269 55.8
Sabra14G0079800 Salix brachista HOM05D007869 ORTHO05D009962 5.5e-74 282.0 281 52.0
Lj2g0022280 Lotus japonicus HOM05D007869 ORTHO05D009962 9.3e-74 281.2 278 52.5
TPR.G29782 Trifolium pratense HOM05D007869 ORTHO05D009962 1.2e-73 280.8 276 52.2
Sabra02G0132700 Salix brachista HOM05D007869 ORTHO05D009962 2.7e-73 279.6 274 53.3
C05p01060 Brassica napus HOM05D007869 ORTHO05D009962 3.5e-73 279.3 299 48.8
FAN01G2503 Fragaria x ananassa HOM05D007869 ORTHO05D009962 7.9e-73 278.1 230 60.4
BolC5t28887H Brassica oleracea HOM05D007869 ORTHO05D009962 1.3e-72 277.3 299 47.8
Manes.05G005500 Manihot esculenta HOM05D007869 ORTHO05D009962 3.9e-72 275.8 273 51.3
TAR374G1227 Trochodendron aralioides HOM05D007869 ORTHO05D009962 3.9e-72 275.8 284 50.4
BraA10t42381Z Brassica rapa HOM05D007869 ORTHO05D009962 1.5e-71 273.9 300 47.0
BcaC05g24607 Brassica carinata HOM05D007869 ORTHO05D009962 2.5e-71 273.1 291 48.8
THA.LOC104825914 Tarenaya hassleriana HOM05D007869 ORTHO05D009962 3.3e-71 272.7 290 49.7
FAN10G1242 Fragaria x ananassa HOM05D007869 ORTHO05D009962 7.4e-71 271.6 224 58.9
Sp1g01350 Schrenkiella parvula HOM05D007869 ORTHO05D009962 9.7e-71 271.2 304 46.4
A10p01030 Brassica napus HOM05D007869 ORTHO05D009962 1.6e-70 270.4 284 48.6
COL.COLO4_23074 Corchorus olitorius HOM05D007869 ORTHO05D009962 1.6e-70 270.4 292 49.7
Sc01g0002100 Simmondsia chinensis HOM05D007869 ORTHO05D009962 6.3e-70 268.5 280 46.1
Aa31LG1G10230 Aethionema arabicum HOM05D007869 ORTHO05D009962 2.6e-68 263.1 305 45.2
CARHR001570 Cardamine hirsuta HOM05D007869 ORTHO05D009962 3.4e-68 262.7 292 46.9
AT2G41610 Arabidopsis thaliana HOM05D007869 ORTHO05D009962 1.7e-67 260.4 296 45.9
EL10Ac1g00161 Beta vulgaris HOM05D007869 ORTHO05D009962 2.2e-67 260.0 278 50.0
Carub.0001s0129 Capsella rubella HOM05D007869 ORTHO05D009962 3.2e-66 256.1 304 44.1
Ah.05g178800 Amaranthus hybridus HOM05D007869 ORTHO05D009962 4.6e-65 252.3 246 52.0
AUR62023523 Chenopodium quinoa HOM05D007869 ORTHO05D009962 7.9e-65 251.5 277 47.7
AL4G39680 Arabidopsis lyrata HOM05D007869 ORTHO05D009962 3.9e-64 249.2 301 44.2
HPP92_007374 Vanilla planifolia HOM05D007869 ORTHO05D009962 3.9e-64 249.2 291 48.1
Os03g0253600 Oryza sativa ssp. japonica HOM05D007869 ORTHO05D009962 5.1e-64 248.8 290 48.3
MBI04_g38990_MAGBIO Magnolia biondii HOM05D007869 ORTHO05D009962 8.8e-64 248.1 247 51.8
AUR62004577 Chenopodium quinoa HOM05D007869 ORTHO05D009962 2.0e-63 246.9 246 50.4
Actinidia28076 Actinidia chinensis HOM05D007869 ORTHO05D009962 2.5e-63 246.5 203 59.1
CSS0017560 Camellia sinensis var. sinensis HOM05D007869 ORTHO05D009962 3.3e-63 246.1 241 52.7
Zm00001eb398460 Zea mays HOM05D007869 ORTHO05D009962 3.3e-63 246.1 294 46.9
arahy.Tifrunner.gnm1.ann1.2P25JP Arachis hypogaea HOM05D007869 ORTHO05D009962 2.8e-62 243.0 262 49.6
arahy.Tifrunner.gnm1.ann1.WBP5Q2 Arachis hypogaea HOM05D007869 ORTHO05D009962 2.8e-62 243.0 261 49.0
Os10g0200700 Oryza sativa ssp. japonica HOM05D007869 ORTHO05D009962 1.1e-61 241.1 285 46.3
Zm00001eb010960 Zea mays HOM05D007869 ORTHO05D009962 2.0e-60 236.9 292 45.9
FvH4_7g18090 Fragaria vesca HOM05D007869 ORTHO05D009962 3.3e-55 219.5 210 56.7
PSO384G3553 Papaver somniferum HOM05D007869 ORTHO05D009962 8.2e-54 214.9 339 41.9
Medtr1g038290 Medicago truncatula HOM05D007869 ORTHO05D009962 1.4e-53 214.2 272 43.8
ATR0579G134 Amborella trichopoda HOM05D007869 ORTHO05D009962 3.1e-53 213.0 275 44.0
Gorai.004G148700 Gossypium raimondii HOM05D007869 ORTHO05D009962 3.5e-52 209.5 169 60.4
PSO135G1025 Papaver somniferum HOM05D007869 ORTHO05D009962 3.5e-52 209.5 309 42.7
Gohir.A08G122700 Gossypium hirsutum HOM05D007869 ORTHO05D009962 5.9e-52 208.8 169 60.4
Gohir.D08G144000 Gossypium hirsutum HOM05D007869 ORTHO05D009962 5.9e-52 208.8 169 60.4
Lju170C22T1 Lonicera japonica HOM05D007869 ORTHO05D009962 2.2e-51 206.8 194 50.0
FvH4_7g18120 Fragaria vesca HOM05D007869 ORTHO05D009962 2.6e-47 193.4 153 62.7
MBI04_g27772_MAGBIO Magnolia biondii HOM05D007869 ORTHO05D009962 3.3e-47 193.0 198 53.5
Rhsim01G0181500 Rhododendron simsii HOM05D007869 ORTHO05D009962 1.8e-45 187.2 170 53.5
Dinv32655 Davidia involucrata HOM05D007869 ORTHO05D009962 4.2e-34 149.4 129 52.7
Duzib133G0538 Durio zibethinus HOM05D007869 ORTHO05D009962 1.7e-14 84.3 171 30.4
SEGI_25376 Sequoiadendron giganteum HOM05D007869 ORTHO05D009962 3.3e-10 70.1 106 40.6


User provided reference genes

Program Settings