Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0016586 Sechium edule HOM05D006988 ORTHO05D008731 2.9e-117 425.2 212 100.0
ClCG06G003000 Citrullus lanatus HOM05D006988 ORTHO05D008731 1.1e-95 353.6 214 84.1
CsaV3_6G009120 Cucumis sativus L. HOM05D006988 ORTHO05D008731 5.2e-95 351.3 214 83.6
MELO3C021141.2 Cucumis melo HOM05D006988 ORTHO05D008731 6.8e-95 350.9 214 83.6
Duzib133G0505 Durio zibethinus HOM05D006988 ORTHO05D008731 7.6e-86 320.9 200 78.5
COL.COLO4_12466 Corchorus olitorius HOM05D006988 ORTHO05D008731 6.4e-85 317.8 210 76.2
Gohir.D07G153600 Gossypium hirsutum HOM05D006988 ORTHO05D008731 7.1e-84 314.3 189 81.0
Prupe.2G135300 Prunus persica HOM05D006988 ORTHO05D008731 7.1e-84 314.3 212 74.5
Haze_02728 Corylus avellana HOM05D006988 ORTHO05D008731 1.2e-83 313.5 205 74.6
Gorai.001G175700 Gossypium raimondii HOM05D006988 ORTHO05D008731 1.2e-83 313.5 189 80.4
Thecc.01G386200 Theobroma cacao HOM05D006988 ORTHO05D008731 2.1e-83 312.8 205 75.1
Potri.014G058400 Populus trichocarpa HOM05D006988 ORTHO05D008731 7.9e-83 310.8 188 78.7
FvH4_7g10720 Fragaria vesca HOM05D006988 ORTHO05D008731 5.1e-82 308.1 212 72.2
Peaxi162Scf00350g00014 Petunia axillaris HOM05D006988 ORTHO05D008731 5.1e-82 308.1 187 80.2
Gohir.A07G147500 Gossypium hirsutum HOM05D006988 ORTHO05D008731 6.6e-82 307.8 189 79.9
CiPaw.13G030900 Carya illinoinensis HOM05D006988 ORTHO05D008731 1.5e-81 306.6 211 70.1
MD07G1111900 Malus domestica HOM05D006988 ORTHO05D008731 5.6e-81 304.7 212 72.6
Sabra14G0042600 Salix brachista HOM05D006988 ORTHO05D008731 5.6e-81 304.7 188 77.7
QL04p035766 Quercus lobata HOM05D006988 ORTHO05D008731 7.3e-81 304.3 178 82.0
Lj1g0025695 Lotus japonicus HOM05D006988 ORTHO05D008731 9.6e-81 303.9 212 73.1
FAN03G1007 Fragaria x ananassa HOM05D006988 ORTHO05D008731 1.6e-80 303.1 212 71.7
Solyc10g018590.2 Solanum lycopersicum HOM05D006988 ORTHO05D008731 4.8e-80 301.6 183 79.8
FAN06G3033 Fragaria x ananassa HOM05D006988 ORTHO05D008731 6.2e-80 301.2 209 72.7
Atru.chr5.214 Acer truncatum HOM05D006988 ORTHO05D008731 8.1e-80 300.8 200 74.0
Ca_27093_v3 Cicer arietinum L. HOM05D006988 ORTHO05D008731 8.1e-80 300.8 207 72.5
VMungo1383G3408 Vigna mungo HOM05D006988 ORTHO05D008731 8.1e-80 300.8 188 78.7
CANSAT01G0747 Cannabis sativa HOM05D006988 ORTHO05D008731 1.1e-79 300.4 199 76.9
FAN06G2548 Fragaria x ananassa HOM05D006988 ORTHO05D008731 1.1e-79 300.4 214 71.0
Phvul.008G157000 Phaseolus vulgaris HOM05D006988 ORTHO05D008731 1.1e-79 300.4 206 72.3
Sopen10g008330 Solanum pennellii HOM05D006988 ORTHO05D008731 1.4e-79 300.1 183 78.7
arahy.Tifrunner.gnm1.ann1.EWF75K Arachis hypogaea HOM05D006988 ORTHO05D008731 2.4e-79 299.3 218 68.8
arahy.Tifrunner.gnm1.ann1.I2GGUW Arachis hypogaea HOM05D006988 ORTHO05D008731 2.4e-79 299.3 218 68.8
Glyma.01G076100 Glycine max HOM05D006988 ORTHO05D008731 9.0e-79 297.4 211 70.6
PGSC0003DMG400011763 Solanum tuberosum HOM05D006988 ORTHO05D008731 1.2e-78 297.0 183 77.6
CSS0001978 Camellia sinensis var. sinensis HOM05D006988 ORTHO05D008731 7.6e-78 294.3 184 77.7
CSS0011747 Camellia sinensis var. sinensis HOM05D006988 ORTHO05D008731 1.7e-77 293.1 184 77.2
Manes.01G270400 Manihot esculenta HOM05D006988 ORTHO05D008731 2.2e-77 292.7 209 70.3
THA.LOC104814078 Tarenaya hassleriana HOM05D006988 ORTHO05D008731 2.2e-77 292.7 213 70.9
Cc02_g24580 Coffea canephora HOM05D006988 ORTHO05D008731 2.9e-77 292.4 211 68.2
Medtr7g444820 Medicago truncatula HOM05D006988 ORTHO05D008731 2.9e-77 292.4 196 74.5
Dinv43657 Davidia involucrata HOM05D006988 ORTHO05D008731 4.9e-77 291.6 194 73.2
Migut.B01575 Erythranthe guttata HOM05D006988 ORTHO05D008731 1.4e-76 290.0 212 70.3
Glyma.11G164037 Glycine max HOM05D006988 ORTHO05D008731 1.9e-76 289.7 206 69.4
Rhsim07G0032500 Rhododendron simsii HOM05D006988 ORTHO05D008731 2.4e-76 289.3 221 64.7
SalBow5G4855 Salvia bowleyana HOM05D006988 ORTHO05D008731 5.4e-76 288.1 188 75.0
CAN.G160.69 Capsicum annuum HOM05D006988 ORTHO05D008731 9.3e-76 287.3 207 70.5
Nitab4.5_0000882g0050 Nicotiana tabacum HOM05D006988 ORTHO05D008731 1.6e-75 286.6 198 74.7
TAR636G1375 Trochodendron aralioides HOM05D006988 ORTHO05D008731 2.1e-75 286.2 187 71.7
COL.COLO4_37993 Corchorus olitorius HOM05D006988 ORTHO05D008731 2.7e-75 285.8 194 73.7
Nn6g33931 Nelumbo nucifera HOM05D006988 ORTHO05D008731 2.7e-75 285.8 200 71.0
Hma1.2p1_0341F.1_g130300 Hydrangea macrophylla HOM05D006988 ORTHO05D008731 7.9e-75 284.3 177 74.6
AUR62004148 Chenopodium quinoa HOM05D006988 ORTHO05D008731 2.3e-74 282.7 192 72.4
AUR62013709 Chenopodium quinoa HOM05D006988 ORTHO05D008731 2.3e-74 282.7 192 72.4
EL10Ac1g00818 Beta vulgaris HOM05D006988 ORTHO05D008731 3.0e-74 282.3 202 69.8
CARHR248070 Cardamine hirsuta HOM05D006988 ORTHO05D008731 3.9e-74 282.0 185 74.1
Lj9A563T51 Lonicera japonica HOM05D006988 ORTHO05D008731 1.5e-73 280.0 213 66.2
Lsat_1_v5_gn_7_10320 Lactuca sativa HOM05D006988 ORTHO05D008731 1.6e-72 276.6 209 65.6
AT4G00030 Arabidopsis thaliana HOM05D006988 ORTHO05D008731 2.8e-72 275.8 211 65.4
Aqoxy7G00790 Aquilegia oxysepala HOM05D006988 ORTHO05D008731 3.7e-72 275.4 185 70.8
MBI04_g09512_MAGBIO Magnolia biondii HOM05D006988 ORTHO05D008731 3.7e-72 275.4 180 73.3
Hund17063 Selenicereus undatus HOM05D006988 ORTHO05D008731 3.7e-72 275.4 215 65.6
Sp6g00080 Schrenkiella parvula HOM05D006988 ORTHO05D008731 8.1e-72 274.2 212 68.4
Nitab4.5_0001501g0030 Nicotiana tabacum HOM05D006988 ORTHO05D008731 1.1e-71 273.9 196 73.0
BcaB01g02207 Brassica carinata HOM05D006988 ORTHO05D008731 3.1e-71 272.3 184 71.2
Carub.0006s3719 Capsella rubella HOM05D006988 ORTHO05D008731 5.3e-71 271.6 185 70.3
DCAR_031865 Daucus carota HOM05D006988 ORTHO05D008731 6.9e-71 271.2 211 64.5
C09p00070 Brassica napus HOM05D006988 ORTHO05D008731 2.6e-70 269.2 185 71.9
BraA09t35681Z Brassica rapa HOM05D006988 ORTHO05D008731 2.6e-70 269.2 185 71.9
ATR0317G076 Amborella trichopoda HOM05D006988 ORTHO05D008731 4.5e-70 268.5 184 69.0
BcaC04g24207 Brassica carinata HOM05D006988 ORTHO05D008731 1.0e-69 267.3 175 73.7
BolC9t52942H Brassica oleracea HOM05D006988 ORTHO05D008731 1.0e-69 267.3 175 73.7
PSO170G6265 Papaver somniferum HOM05D006988 ORTHO05D008731 2.2e-69 266.2 177 72.3
SEGI_39512 Sequoiadendron giganteum HOM05D006988 ORTHO05D008731 2.2e-69 266.2 175 70.3
Aa31LG5G100 Aethionema arabicum HOM05D006988 ORTHO05D008731 2.9e-69 265.8 229 61.1
ECA236G3211 Erigeron canadensis HOM05D006988 ORTHO05D008731 3.8e-69 265.4 185 68.6
AL6G53480 Arabidopsis lyrata HOM05D006988 ORTHO05D008731 4.9e-69 265.0 185 69.2
SGA_v2.0_scaffold153G36954 Striga asiatica HOM05D006988 ORTHO05D008731 6.5e-69 264.6 236 59.7
HanXRQChr06g0168881 Helianthus annuus HOM05D006988 ORTHO05D008731 3.2e-68 262.3 204 65.2
TPR.G39083 Trifolium pratense HOM05D006988 ORTHO05D008731 3.0e-66 255.8 144 84.0
TWI59G0585 Tripterygium wilfordii HOM05D006988 ORTHO05D008731 3.0e-66 255.8 206 68.0
RcHm_v2.0_Chr1g0348671 Rosa chinensis HOM05D006988 ORTHO05D008731 1.9e-65 253.1 181 71.8
Ciclev10022767m.g Citrus clementina HOM05D006988 ORTHO05D008731 4.1e-63 245.4 141 81.6
Os04g0551700 Oryza sativa ssp. japonica HOM05D006988 ORTHO05D008731 1.5e-62 243.4 173 67.6
GSVIVG01018209001 Vitis vinifera HOM05D006988 ORTHO05D008731 7.6e-62 241.1 141 79.4
FAN01G2452 Fragaria x ananassa HOM05D006988 ORTHO05D008731 1.3e-61 240.4 178 69.7
Zm00001eb257570 Zea mays HOM05D006988 ORTHO05D008731 2.2e-61 239.6 173 66.5
Eucgr.D02502 Eucalyptus grandis HOM05D006988 ORTHO05D008731 8.4e-61 237.7 161 73.3
Cpa.g.sc620.2 Carica papaya HOM05D006988 ORTHO05D008731 2.1e-59 233.0 160 72.5
Pp3c14_7270 Physcomitrium patens HOM05D006988 ORTHO05D008731 1.0e-58 230.7 204 57.4
Mapoly0004s0296 Marchantia polymorpha HOM05D006988 ORTHO05D008731 3.0e-58 229.2 190 59.5
SMO367G0814 Selaginella moellendorffii HOM05D006988 ORTHO05D008731 5.1e-58 228.4 171 61.4
SMO367G0459 Selaginella moellendorffii HOM05D006988 ORTHO05D008731 2.5e-57 226.1 171 60.8
Ah.16g110010 Amaranthus hybridus HOM05D006988 ORTHO05D008731 8.2e-56 221.1 151 70.9
MSTRG.20719 Avicennia marina HOM05D006988 ORTHO05D008731 3.1e-55 219.2 154 72.1
Sc23g0003890 Simmondsia chinensis HOM05D006988 ORTHO05D008731 1.2e-54 217.2 169 62.1
Psat3g157120 Pisum sativum HOM05D006988 ORTHO05D008731 9.7e-49 197.6 158 67.1
vmacro13459 Vaccinium macrocarpon HOM05D006988 ORTHO05D008731 2.4e-47 193.0 152 66.4
Thhalv10028565m.g Eutrema salsugineum HOM05D000447 ORTHO05D000315 2.0e-41 173.3 160 61.9
SMO367G0117 Selaginella moellendorffii HOM05D012767 ORTHO05D008731 2.8e-40 169.5 163 53.4
AagrBONN_evm.TU.Sc2ySwM_362.1347 Anthoceros agrestis HOM05D006988 ORTHO05D008731 3.2e-36 156.0 143 55.9
C03p91270 Brassica napus HOM05D006988 ORTHO05D008731 4.2e-36 155.6 123 61.8
Cre14.g618050 Chlamydomonas reinhardtii HOM05D006988 ORTHO05D008731 9.4e-36 154.5 174 49.4
BcaC03g13893 Brassica carinata HOM05D006988 ORTHO05D008731 1.0e-34 151.0 196 43.9
C02p10970 Brassica napus HOM05D006988 ORTHO05D008731 6.7e-34 148.3 89 73.0
BolC2t07167H Brassica oleracea HOM05D006988 ORTHO05D008731 2.0e-33 146.7 89 71.9
PRCOL_00005443 Prasinoderma coloniale HOM05D006988 ORTHO05D008731 1.1e-31 141.0 231 38.5
BcaC01g03084 Brassica carinata HOM05D006988 ORTHO05D008731 1.0e-26 124.4 168 42.3
MCO12G266 Micromonas commoda HOM05D006988 ORTHO05D008731 6.3e-24 115.2 177 41.2
unitig_26.g9723 Utricularia gibba HOM05D000502 ORTHO05D000356 1.1e-23 114.4 81 67.9
Dinv19490 Davidia involucrata HOM05D006985 ORTHO05D008749 1.2e-22 110.9 96 61.5
Lalb_Chr19g0127481 Lupinus albus HOM05D006988 ORTHO05D008731 5.9e-22 108.6 55 83.6
A09p00790 Brassica napus HOM05D006988 ORTHO05D008731 1.2e-17 94.4 104 56.7
Actinidia12175 Actinidia chinensis HOM05D006988 ORTHO05D008731 2.4e-15 86.7 82 52.4
BolC3t17906H Brassica oleracea HOM05D001199 ORTHO05D001013 1.0e-13 81.3 78 59.0
C03p56160 Brassica napus HOM05D001199 ORTHO05D001013 3.3e-12 76.3 80 57.5
Dinv13821 Davidia involucrata HOM05D006988 ORTHO05D008731 6.1e-11 72.0 73 54.8
Lalb_Chr19g0127491 Lupinus albus HOM05D006988 ORTHO05D008731 1.5e-09 67.4 78 55.1
Actinidia22773 Actinidia chinensis HOM05D006988 ORTHO05D008731 1.7e-08 63.9 34 79.4
GSVIVG01026586001 Vitis vinifera HOM05D005663 ORTHO05D007258 1.7e-08 63.9 194 25.3
RcHm_v2.0_Chr1g0348661 Rosa chinensis HOM05D006988 ORTHO05D008731 2.2e-08 63.5 33 81.8
Haze_25195 Corylus avellana HOM05D005663 ORTHO05D007258 4.1e-07 59.3 189 28.6
Lsat_1_v5_gn_4_138241 Lactuca sativa HOM05D005663 ORTHO05D007258 3.5e-06 56.2 192 25.0
Actinidia06667 Actinidia chinensis HOM05D005663 ORTHO05D007258 4.6e-06 55.8 141 27.0
Haze_25187 Corylus avellana HOM05D005663 ORTHO05D007258 4.6e-06 55.8 142 30.3
Gohir.A06G149400 Gossypium hirsutum HOM05D005663 ORTHO05D007258 4.6e-06 55.8 189 23.3
Hund03480 Selenicereus undatus HOM05D005663 ORTHO05D007258 4.6e-06 55.8 104 33.7
HanXRQChr15g0490251 Helianthus annuus HOM05D005663 ORTHO05D007258 5.9e-06 55.5 177 26.6
Mapoly0058s0022 Marchantia polymorpha HOM05D005663 ORTHO05D007258 5.9e-06 55.5 190 27.9


User provided reference genes

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