Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0016557 Sechium edule HOM05D004430 ORTHO05D005088 0.0e+00 2904.4 1497 100.0
ClCG06G017130 Citrullus lanatus HOM05D004430 ORTHO05D005088 0.0e+00 2182.9 1555 75.6
MELO3C026283.2 Cucumis melo HOM05D004430 ORTHO05D005088 0.0e+00 2076.2 1561 72.2
CsaV3_1G001360 Cucumis sativus L. HOM05D004430 ORTHO05D005088 0.0e+00 2063.1 1562 71.6
Sed0007760 Sechium edule HOM05D004430 ORTHO05D005088 0.0e+00 2019.6 1545 72.2
Dinv20629 Davidia involucrata HOM05D004430 ORTHO05D005088 1.2e-289 1000.7 1624 44.8
Atru.chr9.2519 Acer truncatum HOM05D004430 ORTHO05D005088 5.8e-281 971.8 1679 42.8
Prupe.5G170400 Prunus persica HOM05D004430 ORTHO05D005088 1.0e-277 961.1 1699 41.2
RcHm_v2.0_Chr7g0193171 Rosa chinensis HOM05D004430 ORTHO05D005088 3.9e-277 959.1 1605 42.3
Thecc.03G018800 Theobroma cacao HOM05D004430 ORTHO05D005088 1.3e-272 944.1 1604 42.5
Gohir.D02G117900 Gossypium hirsutum HOM05D004430 ORTHO05D005088 2.9e-272 943.0 1621 42.8
Gorai.005G135600 Gossypium raimondii HOM05D004430 ORTHO05D005088 4.9e-272 942.2 1621 42.8
MD06G1170800 Malus domestica HOM05D004430 ORTHO05D005088 6.4e-272 941.8 1620 41.5
Gohir.A03G089900 Gossypium hirsutum HOM05D004430 ORTHO05D005088 6.0e-270 935.3 1622 42.5
GSVIVG01007703001 Vitis vinifera HOM05D004430 ORTHO05D005088 2.1e-267 926.8 1546 42.7
FvH4_5g05640 Fragaria vesca HOM05D004430 ORTHO05D005088 1.8e-266 923.7 1612 42.0
COL.COLO4_30100 Corchorus olitorius HOM05D004430 ORTHO05D005088 2.6e-265 919.8 1633 42.9
Duzib084G1065 Durio zibethinus HOM05D004430 ORTHO05D005088 8.4e-264 914.8 1620 42.7
CSS0010843 Camellia sinensis var. sinensis HOM05D004430 ORTHO05D005088 7.1e-263 911.8 1596 43.0
FAN13G0016 Fragaria x ananassa HOM05D004430 ORTHO05D005088 2.1e-262 910.2 1609 41.2
Dinv38562 Davidia involucrata HOM05D004430 ORTHO05D005088 3.0e-261 906.4 1708 40.0
QL10p008934 Quercus lobata HOM05D004430 ORTHO05D005088 1.1e-260 904.4 1620 41.7
Lj4g0003819 Lotus japonicus HOM05D004430 ORTHO05D005088 4.8e-259 899.0 1614 41.3
Glyma.17G087600 Glycine max HOM05D004430 ORTHO05D005088 4.5e-257 892.5 1621 41.4
Duzib205G1695 Durio zibethinus HOM05D004430 ORTHO05D005088 2.2e-256 890.2 1619 41.6
MD14G1176500 Malus domestica HOM05D004430 ORTHO05D005088 6.4e-256 888.6 1619 40.4
Lalb_Chr12g0201701 Lupinus albus HOM05D004430 ORTHO05D005088 9.3e-255 884.8 1628 41.1
FAN04G2171 Fragaria x ananassa HOM05D004430 ORTHO05D005088 2.1e-254 883.6 1580 40.8
FAN08G1542 Fragaria x ananassa HOM05D004430 ORTHO05D005088 2.1e-254 883.6 1614 40.1
Duzib068G0887 Durio zibethinus HOM05D004430 ORTHO05D005088 2.3e-253 880.2 1607 41.5
FAN18G2048 Fragaria x ananassa HOM05D004430 ORTHO05D005088 1.1e-250 871.3 1602 40.4
arahy.Tifrunner.gnm1.ann1.FBBL0Z Arachis hypogaea HOM05D004430 ORTHO05D005088 2.5e-247 860.1 1620 41.6
Potri.015G079800 Populus trichocarpa HOM05D004430 ORTHO05D005088 2.7e-246 856.7 1599 41.4
FAN18G1146 Fragaria x ananassa HOM05D004430 ORTHO05D005088 1.0e-245 854.7 1610 40.3
TWI39G0976 Tripterygium wilfordii HOM05D004430 ORTHO05D005088 4.8e-243 845.9 1616 40.4
Potri.012G088500 Populus trichocarpa HOM05D004430 ORTHO05D005088 7.6e-241 838.6 1612 40.4
Glyma.05G039400 Glycine max HOM05D004430 ORTHO05D005088 1.9e-239 833.9 1608 39.7
VMungo1215G2998 Vigna mungo HOM05D004430 ORTHO05D005088 3.2e-239 833.2 1669 39.7
Sabra15G0104100 Salix brachista HOM05D004430 ORTHO05D005088 3.9e-237 826.2 1598 39.5
Manes.06G107300 Manihot esculenta HOM05D004430 ORTHO05D005088 1.9e-236 823.9 1654 39.2
CANSAT80G0620 Cannabis sativa HOM05D004430 ORTHO05D005088 8.2e-235 818.5 1614 40.4
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 1.0e-232 811.6 1597 39.9
Lalb_Chr13g0297721 Lupinus albus HOM05D004430 ORTHO05D005088 1.1e-231 808.1 1638 40.5
Manes.06G107200 Manihot esculenta HOM05D004430 ORTHO05D005088 1.4e-231 807.7 1656 39.4
TPR.G28716 Trifolium pratense HOM05D004430 ORTHO05D005088 6.1e-230 802.4 1597 39.8
Ca_16154_v3 Cicer arietinum L. HOM05D004430 ORTHO05D005088 7.9e-230 802.0 1595 39.1
TWI14G0761 Tripterygium wilfordii HOM05D004430 ORTHO05D005088 3.0e-229 800.0 1615 38.9
Lalb_Chr07g0182821 Lupinus albus HOM05D004430 ORTHO05D005088 1.1e-228 798.1 1632 39.3
TAR374G1038 Trochodendron aralioides HOM05D004430 ORTHO05D005088 3.3e-228 796.6 1657 39.1
Phvul.003G202300 Phaseolus vulgaris HOM05D004430 ORTHO05D005088 9.4e-223 778.5 1671 38.3
Sabra12G0063700 Salix brachista HOM05D004430 ORTHO05D005088 1.2e-217 761.5 1654 37.2
Eucgr.B00248 Eucalyptus grandis HOM05D004430 ORTHO05D005088 3.6e-214 750.0 1603 38.9
Medtr3g077440 Medicago truncatula HOM05D004430 ORTHO05D005088 1.5e-212 744.6 1597 38.2
Nitab4.5_0003229g0080 Nicotiana tabacum HOM05D004430 ORTHO05D005088 2.2e-211 740.7 1615 37.9
Ca_16155_v3 Cicer arietinum L. HOM05D004430 ORTHO05D005088 2.8e-211 740.3 1584 38.0
Solyc03g112660.3 Solanum lycopersicum HOM05D004430 ORTHO05D005088 3.7e-211 740.0 1610 37.5
Sopen03g031740 Solanum pennellii HOM05D004430 ORTHO05D005088 2.7e-206 723.8 1624 37.1
vmacro19413 Vaccinium macrocarpon HOM05D004430 ORTHO05D005088 3.0e-205 720.3 1627 37.4
Nitab4.5_0001207g0060 Nicotiana tabacum HOM05D004430 ORTHO05D005088 1.6e-201 708.0 1644 36.7
PGR083G1025 Punica granatum HOM05D004430 ORTHO05D005088 2.0e-196 691.0 1605 36.8
THA.LOC104809247 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 2.6e-196 690.6 1556 37.0
CiPaw.11G023400 Carya illinoinensis HOM05D004430 ORTHO05D005088 4.9e-195 686.4 1545 37.3
Peaxi162Scf00089g00174 Petunia axillaris HOM05D004430 ORTHO05D005088 5.0e-192 676.4 1623 35.1
AUR62028764 Chenopodium quinoa HOM05D004430 ORTHO05D005088 4.3e-191 673.3 1628 35.4
Oeu036008.4 Olea europaea HOM05D004430 ORTHO05D005088 2.6e-188 664.1 1554 37.3
Rhsim08G0174600 Rhododendron simsii HOM05D004430 ORTHO05D005088 1.7e-187 661.4 1625 36.2
Ciclev10018497m.g Citrus clementina HOM05D004430 ORTHO05D005088 1.4e-186 658.3 1426 37.9
AUR62008183 Chenopodium quinoa HOM05D004430 ORTHO05D005088 5.0e-184 649.8 1598 35.4
EL10Ac5g10708 Beta vulgaris HOM05D004430 ORTHO05D005088 7.3e-183 646.0 1621 36.0
Sc04g0001690 Simmondsia chinensis HOM05D004430 ORTHO05D005088 7.3e-183 646.0 1569 36.9
TPR.G28721 Trifolium pratense HOM05D004430 ORTHO05D005088 3.2e-178 630.6 1585 35.3
Nn3g16781 Nelumbo nucifera HOM05D004430 ORTHO05D005088 2.1e-174 617.8 1672 33.9
Psat5g115040 Pisum sativum HOM05D004430 ORTHO05D005088 8.1e-174 615.9 1565 34.5
THA.LOC104809778 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 8.1e-174 615.9 1556 34.7
Psat5g115080 Pisum sativum HOM05D004430 ORTHO05D005088 1.7e-171 608.2 1577 34.4
Migut.D01964 Erythranthe guttata HOM05D004430 ORTHO05D005088 2.2e-171 607.8 1635 35.0
Sp7g22670 Schrenkiella parvula HOM05D004430 ORTHO05D005088 1.1e-170 605.5 1563 34.9
Hund02762 Selenicereus undatus HOM05D004430 ORTHO05D005088 3.2e-170 604.0 1584 35.4
AT4G24680 Arabidopsis thaliana HOM05D004430 ORTHO05D005088 5.6e-167 593.2 1557 34.4
Cc04_g12380 Coffea canephora HOM05D004430 ORTHO05D005088 2.8e-166 590.9 1273 38.3
ECA232G4503 Erigeron canadensis HOM05D004430 ORTHO05D005088 1.4e-165 588.6 1564 34.5
CARHR232060 Cardamine hirsuta HOM05D004430 ORTHO05D005088 3.1e-165 587.4 1572 34.5
Oeu024704.1 Olea europaea HOM05D004430 ORTHO05D005088 8.9e-165 585.9 1645 32.9
AL7G28520 Arabidopsis lyrata HOM05D004430 ORTHO05D005088 1.3e-163 582.0 1566 34.4
Ah.11g051460 Amaranthus hybridus HOM05D004430 ORTHO05D005088 6.4e-163 579.7 1602 33.8
CAN.G1166.22 Capsicum annuum HOM05D004430 ORTHO05D005088 1.4e-162 578.6 1621 34.4
Medtr3g077450 Medicago truncatula HOM05D004430 ORTHO05D005088 6.6e-160 569.7 1581 34.3
SalBow6G6763 Salvia bowleyana HOM05D004430 ORTHO05D005088 3.3e-159 567.4 1656 34.0
CiPaw.12G028500 Carya illinoinensis HOM05D004430 ORTHO05D005088 1.6e-158 565.1 1387 35.8
SalBow6G6905 Salvia bowleyana HOM05D004430 ORTHO05D005088 2.4e-157 561.2 1654 33.8
Aa31LG4G9770 Aethionema arabicum HOM05D004430 ORTHO05D005088 3.1e-157 560.8 1550 34.0
MBI19_g24062_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 8.9e-157 559.3 1749 33.4
Carub.0007s1638 Capsella rubella HOM05D004430 ORTHO05D005088 4.4e-156 557.0 1559 33.5
BraA03t14619Z Brassica rapa HOM05D004430 ORTHO05D005088 6.6e-152 543.1 1557 33.6
Thhalv10024214m.g Eutrema salsugineum HOM05D004430 ORTHO05D005088 1.9e-151 541.6 1577 33.5
A03p55450 Brassica napus HOM05D004430 ORTHO05D005088 5.6e-151 540.0 1556 33.6
BolC7t45865H Brassica oleracea HOM05D004430 ORTHO05D005088 5.3e-149 533.5 1555 34.0
Thhalv10024213m.g Eutrema salsugineum HOM05D004430 ORTHO05D005088 5.3e-149 533.5 1590 32.9
C07p53740 Brassica napus HOM05D004430 ORTHO05D005088 1.5e-148 531.9 1554 34.0
Actinidia19338 Actinidia chinensis HOM05D004430 ORTHO05D005088 2.1e-145 521.5 1219 36.1
C01p20010 Brassica napus HOM05D004430 ORTHO05D005088 7.9e-145 519.6 1560 33.2
Lsat_1_v5_gn_4_75700 Lactuca sativa HOM05D004430 ORTHO05D005088 1.3e-144 518.8 1528 33.9
BolC1t01928H Brassica oleracea HOM05D004430 ORTHO05D005088 3.0e-144 517.7 1556 32.7
BraA01t01536Z Brassica rapa HOM05D004430 ORTHO05D005088 4.3e-143 513.8 1567 33.1
A01p16020 Brassica napus HOM05D004430 ORTHO05D005088 1.6e-142 511.9 1551 33.5
MSTRG.4361 Avicennia marina HOM05D004430 ORTHO05D005088 6.9e-141 506.5 1657 31.6
BcaC06g32869 Brassica carinata HOM05D004430 ORTHO05D005088 2.1e-137 495.0 1569 31.7
arahy.Tifrunner.gnm1.ann1.I95HTR Arachis hypogaea HOM05D004430 ORTHO05D005088 8.7e-136 489.6 777 43.4
PGSC0003DMG402018164 Solanum tuberosum HOM05D004430 ORTHO05D005088 1.6e-134 485.3 1362 33.9
Aqoxy3G01105 Aquilegia oxysepala HOM05D004430 ORTHO05D005088 5.3e-133 480.3 1667 31.6
HanXRQChr17g0548691 Helianthus annuus HOM05D004430 ORTHO05D005088 1.6e-129 468.8 1528 32.4
PSO017G2086 Papaver somniferum HOM05D004430 ORTHO05D005088 5.1e-128 463.8 1711 30.7
PSO478G3312 Papaver somniferum HOM05D004430 ORTHO05D005088 1.3e-126 459.1 1725 30.2
BcaC09g50842 Brassica carinata HOM05D004430 ORTHO05D005088 3.7e-126 457.6 1533 31.6
SGA_v2.0_scaffold7G04148 Striga asiatica HOM05D004430 ORTHO05D005088 4.1e-125 454.1 1587 31.9
HanXRQChr11g0348291 Helianthus annuus HOM05D004430 ORTHO05D005088 5.9e-124 450.3 606 48.0
Hma1.2p1_0046F.1_g026730 Hydrangea macrophylla HOM05D004430 ORTHO05D005088 7.2e-122 443.4 1190 34.8
BcaB03g12441 Brassica carinata HOM05D004430 ORTHO05D005088 1.4e-117 429.1 1498 30.3
ATR0757G157 Amborella trichopoda HOM05D004430 ORTHO05D005088 7.4e-111 406.8 1651 29.8
unitig_37.g12744 Utricularia gibba HOM05D004430 ORTHO05D005088 9.7e-103 379.8 1593 30.3
TAR622G0490 Trochodendron aralioides HOM05D004430 ORTHO05D005088 1.1e-98 366.3 947 34.8
MBI10_g44386_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 1.1e-90 339.7 1483 28.7
Actinidia19112 Actinidia chinensis HOM05D004430 ORTHO05D005088 9.8e-87 326.6 338 56.5
Haze_07543 Corylus avellana HOM05D004430 ORTHO05D005088 2.4e-85 322.0 1568 27.1
Zm00001eb136860 Zea mays HOM05D004430 ORTHO05D005088 2.9e-70 271.9 1635 27.2
Zm00001eb028710 Zea mays HOM05D004430 ORTHO05D005088 1.4e-69 269.6 1536 28.5
Cpa.g.sc153.6 Carica papaya HOM05D004430 ORTHO05D005088 3.1e-64 251.9 193 72.0
HPP92_006251 Vanilla planifolia HOM05D004430 ORTHO05D005088 1.7e-62 246.1 1428 28.2
SHI17143 Sapria himalayana HOM05D004430 ORTHO05D005088 6.4e-62 244.2 700 33.7
Actinidia19110 Actinidia chinensis HOM05D005107 ORTHO05D006200 1.1e-61 243.4 487 39.8
MBI10_g44384_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 4.6e-60 238.0 198 67.2
HPP92_024337 Vanilla planifolia HOM05D004430 ORTHO05D005088 1.0e-59 236.9 1286 28.5
Actinidia33085 Actinidia chinensis HOM05D004430 ORTHO05D005088 3.3e-58 231.9 688 33.1
CDE06G0437 Ceratophyllum demersum HOM05D004430 ORTHO05D005088 6.2e-57 227.6 1566 25.7
unitig_46.g18473 Utricularia gibba HOM05D004430 ORTHO05D007989 4.9e-54 218.0 1537 27.2
CDE02G0036 Ceratophyllum demersum HOM05D004430 ORTHO05D005088 1.5e-50 206.5 199 60.8
SEGI_40513 Sequoiadendron giganteum HOM05D004430 ORTHO05D005088 5.8e-47 194.5 1768 26.3
HPP92_006241 Vanilla planifolia HOM05D004430 ORTHO05D005088 5.8e-47 194.5 208 58.2
HPP92_024330 Vanilla planifolia HOM05D004430 ORTHO05D005088 3.2e-37 162.2 1289 26.1
Actinidia19111 Actinidia chinensis HOM05D004430 ORTHO05D005088 2.3e-35 156.0 451 32.8
TAR622G0342 Trochodendron aralioides HOM05D004430 ORTHO05D005088 1.1e-29 137.1 83 80.7
Pp3c4_23740 Physcomitrium patens HOM05D004430 ORTHO05D005088 7.1e-29 134.4 483 32.9
Mapoly0057s0099 Marchantia polymorpha HOM05D004430 ORTHO05D005088 3.3e-26 125.6 849 27.4
Actinidia33086 Actinidia chinensis HOM05D004430 ORTHO05D005088 1.8e-24 119.8 403 32.8
SMO174G0145 Selaginella moellendorffii HOM05D004430 ORTHO05D005088 1.8e-24 119.8 463 29.4
Pp3c26_2830 Physcomitrium patens HOM05D004430 ORTHO05D005088 2.0e-23 116.3 499 31.9
Psat2g086200 Pisum sativum HOM05D004430 ORTHO05D005088 2.9e-22 112.5 188 42.0
Psat2g086240 Pisum sativum HOM05D004430 ORTHO05D005088 1.6e-20 106.7 227 37.0
Pp3c26_2670 Physcomitrium patens HOM05D004430 ORTHO05D005088 6.0e-20 104.8 237 40.1
TAR622G0951 Trochodendron aralioides HOM05D004430 ORTHO05D005088 6.0e-20 104.8 136 47.1
CBR_g19277 Chara braunii HOM05D004430 ORTHO05D005088 1.8e-19 103.2 504 28.2
Psat2g098600 Pisum sativum HOM05D003093 ORTHO05D005088 5.1e-19 101.7 170 40.6
AagrBONN_evm.TU.Sc2ySwM_344.4397 Anthoceros agrestis HOM05D004430 ORTHO05D005088 8.7e-19 100.9 524 28.8
THA.LOC104822199 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 2.1e-12 79.7 151 37.7
TAR629G1829 Trochodendron aralioides HOM05D003072 ORTHO05D008464 3.0e-11 75.9 130 40.0
Actinidia19337 Actinidia chinensis HOM05D004430 ORTHO05D005088 1.5e-10 73.6 180 31.7
Pp3c4_22960 Physcomitrium patens HOM05D004430 ORTHO05D005088 1.5e-07 63.5 865 24.7
Psat0s4895g0040 Pisum sativum HOM05D002020 ORTHO05D005088 8.5e-06 57.8 63 50.8


User provided reference genes

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