Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0016542 Sechium edule HOM05D004507 ORTHO05D004874 8.6e-97 357.1 190 100.0
ClCG06G012890 Citrullus lanatus HOM05D004507 ORTHO05D004874 1.2e-58 230.3 188 71.3
CsaV3_1G029460 Cucumis sativus L. HOM05D004507 ORTHO05D004874 2.8e-55 219.2 188 67.6
MELO3C010170.2 Cucumis melo HOM05D004507 ORTHO05D004874 3.6e-55 218.8 188 67.0
Sed0006958 Sechium edule HOM05D004507 ORTHO05D004874 2.6e-53 212.6 191 70.2
Atru.chr7.491 Acer truncatum HOM05D004507 ORTHO05D004874 6.9e-38 161.4 186 51.6
CiPaw.07G186500 Carya illinoinensis HOM05D004507 ORTHO05D004874 6.9e-38 161.4 184 51.1
Cfa013550 Carpinus fangiana HOM05D004507 ORTHO05D004874 1.5e-37 160.2 182 53.3
Eucgr.C00212 Eucalyptus grandis HOM05D004507 ORTHO05D004874 2.0e-37 159.8 187 50.8
Cpa.g.sc75.20 Carica papaya HOM05D004507 ORTHO05D004874 3.4e-37 159.1 188 52.7
TWI34G1692 Tripterygium wilfordii HOM05D004507 ORTHO05D004874 1.3e-36 157.1 186 51.1
Haze_22171 Corylus avellana HOM05D004507 ORTHO05D004874 2.5e-35 152.9 188 52.1
Manes.14G147700 Manihot esculenta HOM05D004507 ORTHO05D004874 2.5e-35 152.9 180 48.9
Peaxi162Scf00525g00089 Petunia axillaris HOM05D004507 ORTHO05D004874 2.5e-35 152.9 180 46.7
QL02p095594 Quercus lobata HOM05D004507 ORTHO05D004874 4.2e-35 152.1 188 51.1
TAR626G0275 Trochodendron aralioides HOM05D004507 ORTHO05D004874 4.2e-35 152.1 186 50.0
Potri.018G099100 Populus trichocarpa HOM05D004507 ORTHO05D004874 1.6e-34 150.2 183 48.1
Rhsim01G0012400 Rhododendron simsii HOM05D004507 ORTHO05D004874 2.1e-34 149.8 177 48.6
Ciclev10009640m.g Citrus clementina HOM05D004507 ORTHO05D004874 4.6e-34 148.7 187 49.2
Dinv42787 Davidia involucrata HOM05D004507 ORTHO05D004874 6.0e-34 148.3 190 48.4
Dinv43314 Davidia involucrata HOM05D004507 ORTHO05D004874 6.0e-34 148.3 190 48.4
Duzib187G0534 Durio zibethinus HOM05D004507 ORTHO05D004874 1.8e-33 146.7 181 48.6
VMungo1215G3417 Vigna mungo HOM05D004507 ORTHO05D004874 1.8e-33 146.7 181 46.4
Sabra18G0085600 Salix brachista HOM05D004507 ORTHO05D004874 3.0e-33 146.0 185 46.5
Thecc.09G160500 Theobroma cacao HOM05D004507 ORTHO05D004874 3.0e-33 146.0 186 52.2
Phvul.003G151300 Phaseolus vulgaris HOM05D004507 ORTHO05D004874 6.7e-33 144.8 180 47.2
COL.COLO4_24287 Corchorus olitorius HOM05D004507 ORTHO05D004874 8.7e-33 144.4 191 51.8
Duzib150G1659 Durio zibethinus HOM05D004507 ORTHO05D004874 8.7e-33 144.4 182 50.5
Glyma.13G091500 Glycine max HOM05D004507 ORTHO05D004874 1.1e-32 144.1 186 51.1
Dinv41307 Davidia involucrata HOM05D004507 ORTHO05D004874 1.9e-32 143.3 177 48.0
Nn8g40236 Nelumbo nucifera HOM05D004507 ORTHO05D004874 3.3e-32 142.5 183 49.2
Duzib168G0769 Durio zibethinus HOM05D004507 ORTHO05D004874 4.3e-32 142.1 187 49.2
Nitab4.5_0001427g0130 Nicotiana tabacum HOM05D004507 ORTHO05D004874 4.3e-32 142.1 201 42.3
Nn2g12545 Nelumbo nucifera HOM05D004507 ORTHO05D004874 5.7e-32 141.7 175 47.4
CiPaw.08G040400 Carya illinoinensis HOM05D004507 ORTHO05D004874 7.4e-32 141.4 183 45.9
TAR636G1916 Trochodendron aralioides HOM05D004507 ORTHO05D004874 9.6e-32 141.0 183 47.5
PGSC0003DMG400011171 Solanum tuberosum HOM05D004507 ORTHO05D004874 2.8e-31 139.4 178 44.9
Glyma.17G068800 Glycine max HOM05D004507 ORTHO05D004874 4.8e-31 138.7 182 47.8
Hma1.2p1_0156F.1_g068730 Hydrangea macrophylla HOM05D004507 ORTHO05D004874 4.8e-31 138.7 179 46.4
Lsat_1_v5_gn_7_51920 Lactuca sativa HOM05D004507 ORTHO05D004874 4.8e-31 138.7 193 46.6
Nitab4.5_0002587g0090 Nicotiana tabacum HOM05D004507 ORTHO05D004874 4.8e-31 138.7 187 46.0
Sopen07g002400 Solanum pennellii HOM05D004507 ORTHO05D004874 1.4e-30 137.1 185 44.9
Potri.006G177000 Populus trichocarpa HOM05D004507 ORTHO05D004874 1.8e-30 136.7 186 47.3
Prupe.1G097600 Prunus persica HOM05D004507 ORTHO05D004874 2.4e-30 136.3 184 49.5
Sabra06G0135200 Salix brachista HOM05D004507 ORTHO05D004874 2.4e-30 136.3 176 47.7
TAR383G0901 Trochodendron aralioides HOM05D004507 ORTHO05D004874 2.4e-30 136.3 181 46.4
TAR625G0362 Trochodendron aralioides HOM05D004507 ORTHO05D004874 2.4e-30 136.3 178 47.2
EL10Ac8g18870 Beta vulgaris HOM05D004507 ORTHO05D004874 3.1e-30 136.0 192 44.3
Gohir.D08G097200 Gossypium hirsutum HOM05D004507 ORTHO05D004874 4.1e-30 135.6 186 47.3
Gorai.004G104000 Gossypium raimondii HOM05D004507 ORTHO05D004874 4.1e-30 135.6 186 47.3
HanXRQChr10g0306471 Helianthus annuus HOM05D004507 ORTHO05D004874 4.1e-30 135.6 181 46.4
Aqoxy7G03243 Aquilegia oxysepala HOM05D004507 ORTHO05D004874 3.4e-29 132.5 189 48.1
Lj4g0026981 Lotus japonicus HOM05D004507 ORTHO05D004874 3.4e-29 132.5 180 46.1
Lsat_1_v5_gn_8_64381 Lactuca sativa HOM05D004507 ORTHO05D004874 4.5e-29 132.1 186 44.1
ECA240G1410 Erigeron canadensis HOM05D004507 ORTHO05D004874 5.9e-29 131.7 185 44.3
MSTRG.10721 Avicennia marina HOM05D004507 ORTHO05D004874 1.0e-28 131.0 176 48.3
Gohir.A08G235500 Gossypium hirsutum HOM05D004507 ORTHO05D004874 1.0e-28 131.0 176 47.2
Gohir.D08G255900 Gossypium hirsutum HOM05D004507 ORTHO05D004874 1.7e-28 130.2 181 46.4
Gorai.004G273100 Gossypium raimondii HOM05D004507 ORTHO05D004874 1.7e-28 130.2 176 46.0
TWI32G0773 Tripterygium wilfordii HOM05D004507 ORTHO05D004874 2.9e-28 129.4 187 43.9
Migut.K00276 Erythranthe guttata HOM05D004507 ORTHO05D004874 6.5e-28 128.3 181 45.9
Ca_21181_v3 Cicer arietinum L. HOM05D004507 ORTHO05D004874 1.4e-27 127.1 180 42.8
Lalb_Chr13g0300541 Lupinus albus HOM05D004507 ORTHO05D004874 1.4e-27 127.1 183 43.7
Nitab4.5_0007380g0020 Nicotiana tabacum HOM05D004507 ORTHO05D004874 5.5e-27 125.2 190 44.7
PGR142G2563 Punica granatum HOM05D004507 ORTHO05D004874 5.5e-27 125.2 191 45.5
THA.LOC104803518 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 9.3e-27 124.4 181 47.0
ECA234G3792 Erigeron canadensis HOM05D004507 ORTHO05D004874 2.1e-26 123.2 186 43.5
Oeu045661.2 Olea europaea HOM05D004507 ORTHO05D004874 2.7e-26 122.9 177 43.5
PSO782G3560 Papaver somniferum HOM05D004507 ORTHO05D004874 2.7e-26 122.9 180 45.0
Lsat_1_v5_gn_5_87560 Lactuca sativa HOM05D004507 ORTHO05D004874 3.5e-26 122.5 183 43.2
Psat0s1742g0040 Pisum sativum HOM05D004507 ORTHO05D004874 1.0e-25 120.9 181 40.9
SGA_v2.0_scaffold66G22517 Striga asiatica HOM05D004507 ORTHO05D004874 1.3e-25 120.6 181 41.4
Lalb_Chr12g0199041 Lupinus albus HOM05D004507 ORTHO05D004874 2.3e-25 119.8 183 43.7
CsaV3_2G007890 Cucumis sativus L. HOM05D004507 ORTHO05D004874 6.7e-25 118.2 183 43.7
TPR.G5348 Trifolium pratense HOM05D004507 ORTHO05D004874 6.7e-25 118.2 180 40.6
MBI15_g25682_MAGBIO Magnolia biondii HOM05D004507 ORTHO05D004874 1.1e-24 117.5 181 43.6
CARHR238310 Cardamine hirsuta HOM05D004507 ORTHO05D004874 5.7e-24 115.2 184 43.5
Medtr4g129560 Medicago truncatula HOM05D004507 ORTHO05D004874 9.7e-24 114.4 181 42.5
MSTRG.6179 Avicennia marina HOM05D004507 ORTHO05D004874 1.3e-23 114.0 181 42.5
Thhalv10026358m.g Eutrema salsugineum HOM05D004507 ORTHO05D004874 1.6e-23 113.6 181 44.2
Sp7g28290 Schrenkiella parvula HOM05D004507 ORTHO05D004874 2.2e-23 113.2 181 43.1
AT4G30410 Arabidopsis thaliana HOM05D004507 ORTHO05D004874 3.7e-23 112.5 181 43.1
arahy.Tifrunner.gnm1.ann1.RZ4SGF Arachis hypogaea HOM05D004507 ORTHO05D004874 3.7e-23 112.5 181 40.3
BcaC01g01152 Brassica carinata HOM05D004507 ORTHO05D004874 4.8e-23 112.1 181 44.2
A08p19250 Brassica napus HOM05D004507 ORTHO05D004874 4.8e-23 112.1 186 41.9
C03p88720 Brassica napus HOM05D004507 ORTHO05D004874 4.8e-23 112.1 181 44.2
BraA08t33886Z Brassica rapa HOM05D004507 ORTHO05D004874 4.8e-23 112.1 186 41.9
MD13G1260000 Malus domestica HOM05D004507 ORTHO05D004874 4.8e-23 112.1 165 46.7
BolC3t21183H Brassica oleracea HOM05D004507 ORTHO05D004874 6.3e-23 111.7 181 44.2
THA.LOC104803927 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 6.3e-23 111.7 187 43.9
AL7G21740 Arabidopsis lyrata HOM05D004507 ORTHO05D004874 8.2e-23 111.3 181 43.1
arahy.Tifrunner.gnm1.ann1.40EERC Arachis hypogaea HOM05D004507 ORTHO05D004874 1.1e-22 110.9 181 39.8
CSS0033256 Camellia sinensis var. sinensis HOM05D004507 ORTHO05D004874 1.1e-22 110.9 151 45.7
MELO3C004096.2 Cucumis melo HOM05D004507 ORTHO05D004874 1.1e-22 110.9 180 42.8
Aa31LG2G20120 Aethionema arabicum HOM05D004507 ORTHO05D004874 1.4e-22 110.5 181 42.0
A01p07760 Brassica napus HOM05D004507 ORTHO05D004874 1.8e-22 110.2 181 42.5
BraA01t00720Z Brassica rapa HOM05D004507 ORTHO05D004874 1.8e-22 110.2 181 42.5
Sed0016375 Sechium edule HOM05D004507 ORTHO05D004874 1.8e-22 110.2 182 43.4
DCAR_017942 Daucus carota HOM05D004507 ORTHO05D004874 2.4e-22 109.8 189 38.6
MSTRG.19674 Avicennia marina HOM05D004507 ORTHO05D004874 3.1e-22 109.4 175 42.3
HanXRQChr09g0245171 Helianthus annuus HOM05D004507 ORTHO05D004874 3.1e-22 109.4 168 48.8
C01p08650 Brassica napus HOM05D004507 ORTHO05D004874 5.3e-22 108.6 181 42.0
Carub.0007s1019 Capsella rubella HOM05D004507 ORTHO05D004874 6.9e-22 108.2 181 41.4
THA.LOC104817812 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 6.9e-22 108.2 178 41.0
BcaB03g12646 Brassica carinata HOM05D004507 ORTHO05D004874 9.0e-22 107.8 183 40.4
BcaB03g12647 Brassica carinata HOM05D004507 ORTHO05D004874 9.0e-22 107.8 183 40.4
BcaNung02991 Brassica carinata HOM05D004507 ORTHO05D004874 9.0e-22 107.8 184 41.3
HanXRQChr03g0066301 Helianthus annuus HOM05D004507 ORTHO05D004874 2.6e-21 106.3 153 46.4
THA.LOC104819987 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 2.6e-21 106.3 186 44.6
SGA_v2.0_scaffold69G23313 Striga asiatica HOM05D004507 ORTHO05D004874 3.4e-21 105.9 186 39.8
BcaC09g51830 Brassica carinata HOM05D004507 ORTHO05D004874 4.5e-21 105.5 181 41.4
BolC1t00847H Brassica oleracea HOM05D004507 ORTHO05D004874 4.5e-21 105.5 181 41.4
MD16G1262200 Malus domestica HOM05D004507 ORTHO05D004874 4.5e-21 105.5 158 47.5
Oeu031854.1 Olea europaea HOM05D004507 ORTHO05D004874 5.9e-21 105.1 152 43.4
Sed0015365 Sechium edule HOM05D004507 ORTHO05D004874 1.3e-20 104.0 174 46.0
ATR0580G302 Amborella trichopoda HOM05D004507 ORTHO05D004874 2.9e-20 102.8 177 37.9
Lalb_Chr07g0180071 Lupinus albus HOM05D004507 ORTHO05D004874 4.2e-19 99.0 182 36.3
AUR62028409 Chenopodium quinoa HOM05D004507 ORTHO05D004874 9.4e-19 97.8 154 41.6
HanXRQChr12g0358031 Helianthus annuus HOM05D004507 ORTHO05D004874 1.6e-18 97.1 158 43.7
AUR62039753 Chenopodium quinoa HOM05D004507 ORTHO05D004874 4.6e-18 95.5 154 40.9
MBI14_g08083_MAGBIO Magnolia biondii HOM05D004507 ORTHO05D004874 1.8e-17 93.6 162 40.7
CDE05G1486 Ceratophyllum demersum HOM05D004507 ORTHO05D004874 2.5e-16 89.7 167 38.9
CDE02G1288 Ceratophyllum demersum HOM05D004507 ORTHO05D004874 1.7e-15 87.0 167 38.3
GSVIVG01023743001 Vitis vinifera HOM05D004507 ORTHO05D004874 1.7e-15 87.0 93 49.5
AT5G57780 Arabidopsis thaliana HOM05D004507 ORTHO05D004874 2.2e-15 86.7 177 37.9
unitig_62.g23492 Utricularia gibba HOM05D004507 ORTHO05D004874 3.1e-14 82.8 185 36.8
BcaC04g19929 Brassica carinata HOM05D004507 ORTHO05D004874 6.9e-14 81.6 178 40.4
BolC9t57818H Brassica oleracea HOM05D004507 ORTHO05D004874 6.9e-14 81.6 178 40.4
A10p15150 Brassica napus HOM05D004507 ORTHO05D004874 9.1e-14 81.3 178 39.9
BraA10t43598Z Brassica rapa HOM05D004507 ORTHO05D004874 9.1e-14 81.3 178 39.9
Sp6g19460 Schrenkiella parvula HOM05D004507 ORTHO05D004874 9.1e-14 81.3 185 34.6
AL8G33810 Arabidopsis lyrata HOM05D004507 ORTHO05D004874 1.2e-13 80.9 177 36.2
C09p49660 Brassica napus HOM05D004507 ORTHO05D004874 1.5e-13 80.5 178 39.9
BcaB08g36143 Brassica carinata HOM05D004507 ORTHO05D004874 2.0e-13 80.1 177 37.3
CARHR271510 Cardamine hirsuta HOM05D004507 ORTHO05D004874 2.0e-13 80.1 178 36.5
SHI49167 Sapria himalayana HOM05D004507 ORTHO05D004874 3.4e-13 79.3 177 36.2
Zm00001eb412560 Zea mays HOM05D004507 ORTHO05D004874 4.5e-13 79.0 194 34.5
Thhalv10014877m.g Eutrema salsugineum HOM05D004507 ORTHO05D004874 5.9e-13 78.6 177 36.2
Os02g0178700 Oryza sativa ssp. japonica HOM05D004507 ORTHO05D004874 1.0e-12 77.8 197 35.0
CANSAT11G0203 Cannabis sativa HOM05D004507 ORTHO05D004874 1.3e-12 77.4 194 33.5
ClCG11G012600 Citrullus lanatus HOM05D004507 ORTHO05D004874 2.2e-12 76.6 139 44.6
Carub.0008s1829 Capsella rubella HOM05D004507 ORTHO05D004874 6.5e-12 75.1 172 38.4
SalBow1G3357 Salvia bowleyana HOM05D004507 ORTHO05D004874 6.5e-12 75.1 92 47.8
Zm00001eb192600 Zea mays HOM05D004507 ORTHO05D004874 1.2e-10 70.9 182 32.4
Cc06_g14060 Coffea canephora HOM05D004507 ORTHO05D004874 4.7e-10 68.9 82 45.1
SEGI_26334 Sequoiadendron giganteum HOM05D000047 ORTHO05D000044 4.7e-10 68.9 186 32.3
Solyc07g006310.1 Solanum lycopersicum HOM05D004507 ORTHO05D004874 1.0e-09 67.8 45 68.9
SEGI_39312 Sequoiadendron giganteum HOM05D004507 ORTHO05D004874 2.3e-09 66.6 154 33.8
Os02g0791300 Oryza sativa ssp. japonica HOM05D004507 ORTHO05D004874 3.0e-09 66.2 180 33.9
Zm00001eb389070 Zea mays HOM05D004507 ORTHO05D004874 5.1e-09 65.5 195 28.2
unitig_37.g12687 Utricularia gibba HOM05D004507 ORTHO05D004874 1.7e-07 60.5 60 53.3
Zm00001eb233860 Zea mays HOM05D004507 ORTHO05D004874 4.8e-07 58.9 53 56.6
CDE02G1081 Ceratophyllum demersum HOM05D001624 ORTHO05D001530 8.2e-07 58.2 168 32.1
SHI24759 Sapria himalayana HOM05D016562 ORTHO05D004874 1.4e-06 57.4 46 60.9
Zm00001eb432720 Zea mays HOM05D005211 ORTHO05D006148 7.0e-06 55.1 54 51.9


User provided reference genes

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