Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0016487 Sechium edule HOM05D005470 ORTHO05D006855 8.5e-171 603.6 308 100.0
ClCG07G001860 Citrullus lanatus HOM05D005470 ORTHO05D006855 2.9e-142 508.8 314 83.1
CsaV3_3G028840 Cucumis sativus L. HOM05D005470 ORTHO05D006855 1.1e-141 506.9 310 83.9
MELO3C026704.2 Cucumis melo HOM05D005470 ORTHO05D006855 1.2e-140 503.4 310 84.2
CsaV3_6G036910 Cucumis sativus L. HOM05D005470 ORTHO05D006855 1.2e-137 493.4 309 82.2
Eucgr.H00804 Eucalyptus grandis HOM05D005470 ORTHO05D006855 1.2e-127 460.3 311 73.0
MD10G1166100 Malus domestica HOM05D005470 ORTHO05D006855 1.1e-125 453.8 317 72.6
Manes.12G042650 Manihot esculenta HOM05D005470 ORTHO05D006855 3.2e-125 452.2 321 71.0
vmacro02749 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 1.6e-124 449.9 328 69.5
QL03p049466 Quercus lobata HOM05D005470 ORTHO05D006855 3.5e-124 448.7 308 73.1
Duzib211G0062 Durio zibethinus HOM05D005470 ORTHO05D006855 1.3e-123 446.8 315 72.1
Rhsim13G0044300 Rhododendron simsii HOM05D006020 ORTHO05D006855 2.3e-123 446.0 303 72.3
Potri.002G240800 Populus trichocarpa HOM05D005470 ORTHO05D006855 5.1e-123 444.9 318 69.8
Sabra02G0183400 Salix brachista HOM05D005470 ORTHO05D006855 5.1e-123 444.9 318 69.8
Ca_07533_v3 Cicer arietinum L. HOM05D005470 ORTHO05D006855 8.6e-123 444.1 314 71.3
Haze_24781 Corylus avellana HOM05D005470 ORTHO05D006855 8.6e-123 444.1 320 70.9
Psat3g144240 Pisum sativum HOM05D005470 ORTHO05D006855 1.1e-122 443.7 310 71.0
Actinidia37584 Actinidia chinensis HOM05D005470 ORTHO05D006855 1.5e-122 443.4 313 71.6
CSS0013378 Camellia sinensis var. sinensis HOM05D005470 ORTHO05D006855 1.5e-122 443.4 317 71.3
Cpa.g.sc8.172 Carica papaya HOM05D005470 ORTHO05D006855 1.5e-122 443.4 313 70.9
Phvul.007G209400 Phaseolus vulgaris HOM05D005470 ORTHO05D006855 2.5e-122 442.6 304 72.4
Lalb_Chr19g0125551 Lupinus albus HOM05D005470 ORTHO05D006855 3.3e-122 442.2 308 70.5
RcHm_v2.0_Chr6g0285101 Rosa chinensis HOM05D005470 ORTHO05D006855 1.2e-121 440.3 308 71.1
Thecc.01G227800 Theobroma cacao HOM05D005470 ORTHO05D006855 1.2e-121 440.3 315 70.5
FvH4_2g19300 Fragaria vesca HOM05D005470 ORTHO05D006855 4.7e-121 438.3 308 70.5
Glyma.18G172500 Glycine max HOM05D005470 ORTHO05D006855 4.7e-121 438.3 303 71.6
Medtr7g058920 Medicago truncatula HOM05D005470 ORTHO05D006855 4.7e-121 438.3 310 71.6
VMungo0516G0001 Vigna mungo HOM05D005470 ORTHO05D006855 4.7e-121 438.3 304 71.4
FAN24G1307 Fragaria x ananassa HOM05D005470 ORTHO05D006855 6.2e-121 438.0 308 70.5
CiPaw.04G106400 Carya illinoinensis HOM05D005470 ORTHO05D006855 1.1e-120 437.2 311 69.5
Lj2A1133T34 Lonicera japonica HOM05D005470 ORTHO05D006855 1.1e-120 437.2 312 70.2
Lj1g0018515 Lotus japonicus HOM05D005470 ORTHO05D006855 1.1e-120 437.2 307 70.7
Gohir.D07G162300 Gossypium hirsutum HOM05D005470 ORTHO05D006855 3.1e-120 435.6 319 69.3
Gorai.001G185900 Gossypium raimondii HOM05D005470 ORTHO05D006855 3.1e-120 435.6 319 69.3
Atru.chr5.1498 Acer truncatum HOM05D005470 ORTHO05D006855 8.9e-120 434.1 307 70.0
TPR.G15281 Trifolium pratense HOM05D005470 ORTHO05D006855 1.2e-119 433.7 309 69.9
Gohir.A07G156000 Gossypium hirsutum HOM05D005470 ORTHO05D006855 3.4e-119 432.2 319 69.0
arahy.Tifrunner.gnm1.ann1.07T9WF Arachis hypogaea HOM05D005470 ORTHO05D006855 5.8e-119 431.4 306 69.3
EL10Ac7g17787 Beta vulgaris HOM05D005470 ORTHO05D006855 5.8e-119 431.4 309 69.3
Nn3g19926 Nelumbo nucifera HOM05D005470 ORTHO05D006855 5.8e-119 431.4 326 66.9
THA.LOC104802678 Tarenaya hassleriana HOM05D005470 ORTHO05D006855 2.2e-118 429.5 310 70.6
PGR083G1301 Punica granatum HOM05D005470 ORTHO05D006855 2.9e-118 429.1 311 69.5
TAR365G1033 Trochodendron aralioides HOM05D005470 ORTHO05D006855 3.8e-118 428.7 317 69.1
Sopen09g024670 Solanum pennellii HOM05D005470 ORTHO05D006855 4.9e-118 428.3 312 68.3
AUR62031834 Chenopodium quinoa HOM05D005470 ORTHO05D006855 8.4e-118 427.6 308 68.8
Hma1.2p1_1061F.1_g253380 Hydrangea macrophylla HOM05D005470 ORTHO05D006855 8.4e-118 427.6 315 68.3
Dinv04663 Davidia involucrata HOM05D005470 ORTHO05D006855 1.1e-117 427.2 302 70.5
Migut.I00044 Erythranthe guttata HOM05D005470 ORTHO05D006855 1.4e-117 426.8 314 68.2
Cc01_g17220 Coffea canephora HOM05D005470 ORTHO05D006855 2.4e-117 426.0 316 67.4
MSTRG.21429 Avicennia marina HOM05D005470 ORTHO05D006855 3.2e-117 425.6 315 66.7
arahy.Tifrunner.gnm1.ann1.KE0QUS Arachis hypogaea HOM05D005470 ORTHO05D006855 4.1e-117 425.2 307 68.4
DCAR_018553 Daucus carota HOM05D005470 ORTHO05D006855 4.1e-117 425.2 297 70.4
SGA_v2.0_scaffold8G04652 Striga asiatica HOM05D005470 ORTHO05D006855 5.4e-117 424.9 307 69.1
Nitab4.5_0000866g0040 Nicotiana tabacum HOM05D005470 ORTHO05D006855 9.2e-117 424.1 316 67.4
Nitab4.5_0000866g0080 Nicotiana tabacum HOM05D005470 ORTHO05D006855 9.2e-117 424.1 316 67.7
GSVIVG01028578001 Vitis vinifera HOM05D005470 ORTHO05D006855 9.2e-117 424.1 304 70.4
Oeu015466.1 Olea europaea HOM05D005470 ORTHO05D006855 1.6e-116 423.3 303 69.3
PSO017G3643 Papaver somniferum HOM05D005470 ORTHO05D006855 1.6e-116 423.3 316 69.6
Aqoxy2G03764 Aquilegia oxysepala HOM05D005470 ORTHO05D006855 3.5e-116 422.2 314 69.4
Migut.D00523 Erythranthe guttata HOM05D005470 ORTHO05D006855 4.6e-116 421.8 309 68.9
PSO478G2025 Papaver somniferum HOM05D005470 ORTHO05D006855 6.0e-116 421.4 314 70.4
Sc17g0002580 Simmondsia chinensis HOM05D005470 ORTHO05D006855 6.0e-116 421.4 304 70.1
Solyc09g061680.3 Solanum lycopersicum HOM05D005470 ORTHO05D006855 7.8e-116 421.0 312 67.6
arahy.Tifrunner.gnm1.ann1.4GE7F8 Arachis hypogaea HOM05D005470 ORTHO05D006855 1.0e-115 420.6 308 68.5
CANSAT56G1556 Cannabis sativa HOM05D005470 ORTHO05D006855 1.7e-115 419.9 319 67.1
PGSC0003DMG400002375 Solanum tuberosum HOM05D005470 ORTHO05D006855 1.7e-115 419.9 312 67.3
Nitab4.5_0003790g0040 Nicotiana tabacum HOM05D005470 ORTHO05D006855 5.1e-115 418.3 316 67.1
TWI75G1873 Tripterygium wilfordii HOM05D005470 ORTHO05D006855 5.1e-115 418.3 316 66.5
Hund18358 Selenicereus undatus HOM05D005470 ORTHO05D006855 8.7e-115 417.5 315 67.6
BraA06t26801Z Brassica rapa HOM05D005470 ORTHO05D006855 1.1e-114 417.2 314 68.2
HanXRQChr04g0110691 Helianthus annuus HOM05D005470 ORTHO05D006855 1.5e-114 416.8 304 67.1
AT5G48840 Arabidopsis thaliana HOM05D005470 ORTHO05D006855 2.5e-114 416.0 307 67.4
BcaC06g30753 Brassica carinata HOM05D005470 ORTHO05D006855 9.6e-114 414.1 314 66.2
Sp2g19240 Schrenkiella parvula HOM05D005470 ORTHO05D006855 9.6e-114 414.1 312 67.9
Aa31sc866G40 Aethionema arabicum HOM05D005470 ORTHO05D006855 1.2e-113 413.7 310 67.4
C07p39460 Brassica napus HOM05D005470 ORTHO05D006855 6.2e-113 411.4 315 66.0
BolC7t44465H Brassica oleracea HOM05D005470 ORTHO05D006855 1.1e-112 410.6 314 65.9
Thhalv10004618m.g Eutrema salsugineum HOM05D005470 ORTHO05D006855 1.1e-112 410.6 314 67.2
AL8G22020 Arabidopsis lyrata HOM05D005470 ORTHO05D006855 1.4e-112 410.2 307 66.8
Ciclev10021316m.g Citrus clementina HOM05D005470 ORTHO05D006855 1.4e-112 410.2 306 68.3
Ah.08g214020 Amaranthus hybridus HOM05D005470 ORTHO05D006855 2.4e-112 409.5 338 63.6
CAN.G1273.33 Capsicum annuum HOM05D005470 ORTHO05D006855 1.5e-111 406.8 311 67.2
Peaxi162Scf00107g01116 Petunia axillaris HOM05D005470 ORTHO05D006855 7.1e-109 397.9 315 64.1
Prupe.8G204600 Prunus persica HOM05D005470 ORTHO05D006855 7.1e-109 397.9 279 69.5
Os03g0851800 Oryza sativa ssp. japonica HOM05D005470 ORTHO05D006855 1.2e-108 397.1 311 67.2
Carub.0008s0857 Capsella rubella HOM05D005470 ORTHO05D006855 6.0e-108 394.8 309 65.4
CDE01G0096 Ceratophyllum demersum HOM05D005470 ORTHO05D006855 3.0e-107 392.5 338 60.4
CARHR182880 Cardamine hirsuta HOM05D005470 ORTHO05D006855 2.5e-106 389.4 309 64.1
Lsat_1_v5_gn_8_90101 Lactuca sativa HOM05D005470 ORTHO05D006855 2.5e-106 389.4 316 64.2
Cfa002558 Carpinus fangiana HOM05D005470 ORTHO05D006855 1.2e-103 380.6 321 62.3
ATR0736G181 Amborella trichopoda HOM05D005470 ORTHO05D006855 2.2e-102 376.3 326 59.8
HPP92_021568 Vanilla planifolia HOM05D005470 ORTHO05D006855 1.9e-101 373.2 307 64.8
Zm00001eb064670 Zea mays HOM05D005470 ORTHO05D006855 1.9e-101 373.2 309 65.0
A06p38870 Brassica napus HOM05D006020 ORTHO05D007665 9.3e-101 370.9 295 64.7
BcaC06g30729 Brassica carinata HOM05D005470 ORTHO05D006855 3.0e-99 365.9 272 67.6
MBI07_g00286_MAGBIO Magnolia biondii HOM05D004483 ORTHO05D005609 7.6e-95 351.3 377 51.2
Mapoly0006s0023 Marchantia polymorpha HOM05D005470 ORTHO05D006855 9.9e-95 350.9 301 59.8
SEGI_32261 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 2.4e-93 346.3 303 58.4
SHI28627 Sapria himalayana HOM05D005470 ORTHO05D006855 5.5e-93 345.1 303 61.7
Pp3c24_12730 Physcomitrium patens HOM05D005470 ORTHO05D006855 5.1e-91 338.6 297 57.9
Hma1.2p1_1061F.1_g253390 Hydrangea macrophylla HOM05D005470 ORTHO05D006855 4.3e-90 335.5 226 73.0
SMO144G0038 Selaginella moellendorffii HOM05D005470 ORTHO05D006855 3.7e-89 332.4 297 55.9
TAR365G0091 Trochodendron aralioides HOM05D005470 ORTHO05D006855 7.6e-87 324.7 231 69.7
AUR62008875 Chenopodium quinoa HOM05D005470 ORTHO05D006855 1.7e-86 323.6 271 63.1
SMO351G0371 Selaginella moellendorffii HOM05D005470 ORTHO05D006855 2.9e-86 322.8 298 55.4
CBR_g41676 Chara braunii HOM05D005470 ORTHO05D006855 1.1e-82 310.8 351 50.7
ECA236G4489 Erigeron canadensis HOM05D005470 ORTHO05D006855 7.7e-79 298.1 230 67.0
MCO10G244 Micromonas commoda HOM05D005470 ORTHO05D006855 8.8e-75 284.6 336 48.5
SEGI_26814 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 1.7e-73 280.4 231 60.6
vmacro15783 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 1.1e-69 267.7 201 67.7
CANSAT01G1736 Cannabis sativa HOM05D005470 ORTHO05D006855 4.4e-66 255.8 177 72.3
Nn1g07785 Nelumbo nucifera HOM05D005470 ORTHO05D006855 9.7e-66 254.6 195 64.1
Atru.chr5.2014 Acer truncatum HOM05D005470 ORTHO05D006855 4.1e-64 249.2 185 64.9
Cre02.g090150 Chlamydomonas reinhardtii HOM05D005470 ORTHO05D006855 7.2e-53 211.8 216 50.9
HanXRQChr16g0514371 Helianthus annuus HOM05D005470 ORTHO05D006855 1.4e-48 197.6 148 64.2
vmacro15781 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 9.1e-48 194.9 227 52.4
Haze_26957 Corylus avellana HOM05D005470 ORTHO05D006855 1.2e-44 184.5 280 42.5
vmacro23327 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 1.6e-44 184.1 187 57.2
TAR636G1319 Trochodendron aralioides HOM05D005470 ORTHO05D006855 9.1e-40 168.3 159 55.3
unitig_92.g28106 Utricularia gibba HOM05D005470 ORTHO05D006855 2.9e-38 163.3 112 67.0
Cfa025604 Carpinus fangiana HOM05D005470 ORTHO05D006855 3.0e-35 153.3 299 35.8
Glyma.08G355700 Glycine max HOM05D005470 ORTHO05D006855 9.8e-34 148.3 299 37.1
unitig_92.g28105 Utricularia gibba HOM05D005470 ORTHO05D006855 1.7e-30 137.5 124 60.5
arahy.Tifrunner.gnm1.ann1.K5YBAW Arachis hypogaea HOM05D005470 ORTHO05D006855 1.7e-25 120.9 121 62.0
MELO3C014350.2 Cucumis melo HOM05D005470 ORTHO05D006855 7.3e-21 105.5 60 91.7
arahy.Tifrunner.gnm1.ann1.M1HUIQ Arachis hypogaea HOM05D005470 ORTHO05D006855 2.1e-20 104.0 121 57.0
MD05G1177900 Malus domestica HOM05D005470 ORTHO05D006855 5.2e-19 99.4 167 42.5
SEGI_11949 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 8.9e-19 98.6 141 38.3
CsaV3_1G001100 Cucumis sativus L. HOM05D005470 ORTHO05D006855 5.8e-18 95.9 61 80.3
Nn1g07786 Nelumbo nucifera HOM05D005470 ORTHO05D006855 1.7e-17 94.4 83 59.0
CAN.G122.7 Capsicum annuum HOM05D005470 ORTHO05D006855 2.9e-17 93.6 110 46.4
arahy.Tifrunner.gnm1.ann1.GL96XS Arachis hypogaea HOM05D005470 ORTHO05D006855 3.7e-17 93.2 89 58.4
CSS0038259 Camellia sinensis var. sinensis HOM05D005470 ORTHO05D006855 3.2e-16 90.1 74 60.8
FAN15G3610 Fragaria x ananassa HOM05D005470 ORTHO05D006855 5.4e-16 89.4 73 64.4
COL.COLO4_06654 Corchorus olitorius HOM05D005470 ORTHO05D006855 1.2e-15 88.2 69 63.8
Atru.chr5.2015 Acer truncatum HOM05D005470 ORTHO05D006855 3.5e-15 86.7 83 59.0
MD05G1178000 Malus domestica HOM05D005470 ORTHO05D006855 6.6e-14 82.4 69 58.0
CANSAT54G2179 Cannabis sativa HOM05D005470 ORTHO05D006855 1.9e-13 80.9 118 44.1
arahy.Tifrunner.gnm1.ann1.HRPB72 Arachis hypogaea HOM05D005470 ORTHO05D006855 3.3e-13 80.1 83 55.4


User provided reference genes

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