Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0016416 Sechium edule HOM05D007781 ORTHO05D009769 1.7e-47 193.0 149 100.0
CsaV3_1G012280 Cucumis sativus L. HOM05D007781 ORTHO05D009769 7.8e-37 157.5 142 76.1
ClCG03G006020 Citrullus lanatus HOM05D007781 ORTHO05D009769 2.3e-36 156.0 142 76.1
MELO3C002600.2 Cucumis melo HOM05D007781 ORTHO05D009769 5.1e-36 154.8 145 73.8
Ciclev10017149m.g Citrus clementina HOM05D007781 ORTHO05D009769 1.4e-25 120.2 141 66.0
Duzib235G1462 Durio zibethinus HOM05D007781 ORTHO05D009769 6.9e-25 117.9 132 64.4
Hma1.2p1_0126F.1_g059410 Hydrangea macrophylla HOM05D007781 ORTHO05D009769 9.0e-25 117.5 132 65.9
CiPaw.09G059400 Carya illinoinensis HOM05D007781 ORTHO05D009769 2.0e-24 116.3 137 65.0
TPR.G12128 Trifolium pratense HOM05D007781 ORTHO05D009769 6.4e-23 111.3 137 65.7
TAR627G0113 Trochodendron aralioides HOM05D007781 ORTHO05D009769 1.1e-22 110.5 128 67.2
Thecc.06G188400 Theobroma cacao HOM05D007781 ORTHO05D009769 2.4e-22 109.4 96 79.2
Prupe.4G046600 Prunus persica HOM05D007781 ORTHO05D009769 7.1e-22 107.8 94 85.1
PGR042G1810 Punica granatum HOM05D007781 ORTHO05D009769 9.3e-22 107.5 161 56.5
MD05G1313200 Malus domestica HOM05D007781 ORTHO05D009769 1.6e-21 106.7 94 81.9
MD10G1295400 Malus domestica HOM05D007781 ORTHO05D009769 3.5e-21 105.5 94 80.9
Psat7g113680 Pisum sativum HOM05D007781 ORTHO05D009769 3.5e-21 105.5 130 61.5
Gohir.A05G161900 Gossypium hirsutum HOM05D007781 ORTHO05D009769 1.0e-20 104.0 95 75.8
Gohir.D05G164700 Gossypium hirsutum HOM05D007781 ORTHO05D009769 1.0e-20 104.0 95 75.8
Gorai.009G169900 Gossypium raimondii HOM05D007781 ORTHO05D009769 2.3e-20 102.8 95 74.7
Lj4g0009430 Lotus japonicus HOM05D007781 ORTHO05D009769 3.0e-20 102.4 137 68.6
FvH4_3g09310 Fragaria vesca HOM05D007781 ORTHO05D009769 8.7e-20 100.9 94 79.8
FAN11G2776 Fragaria x ananassa HOM05D007781 ORTHO05D009769 8.7e-20 100.9 94 79.8
FAN21G0375 Fragaria x ananassa HOM05D007781 ORTHO05D009769 8.7e-20 100.9 94 79.8
Dinv40553 Davidia involucrata HOM05D007781 ORTHO05D009769 1.1e-19 100.5 94 79.8
RcHm_v2.0_Chr5g0008291 Rosa chinensis HOM05D007781 ORTHO05D009769 1.9e-19 99.8 129 65.9
FAN16G0963 Fragaria x ananassa HOM05D007781 ORTHO05D009769 2.5e-19 99.4 93 79.6
COL.COLO4_31480 Corchorus olitorius HOM05D007781 ORTHO05D009769 3.3e-19 99.0 96 70.8
Sabra04G0026700 Salix brachista HOM05D007781 ORTHO05D009769 7.3e-19 97.8 134 67.9
Sc17g0006220 Simmondsia chinensis HOM05D007781 ORTHO05D009769 9.6e-19 97.4 95 77.9
arahy.Tifrunner.gnm1.ann1.QC0LUE Arachis hypogaea HOM05D007781 ORTHO05D009769 1.6e-18 96.7 140 63.6
Eucgr.E03314 Eucalyptus grandis HOM05D007781 ORTHO05D009769 2.1e-18 96.3 96 74.0
Manes.16G027000 Manihot esculenta HOM05D007781 ORTHO05D009769 3.6e-18 95.5 96 78.1
GSVIVG01003209001 Vitis vinifera HOM05D007781 ORTHO05D009769 3.6e-18 95.5 91 81.3
CANSAT35G1759 Cannabis sativa HOM05D007781 ORTHO05D009769 6.2e-18 94.7 95 76.8
arahy.Tifrunner.gnm1.ann1.KV0YZV Arachis hypogaea HOM05D007781 ORTHO05D009769 1.1e-17 94.0 140 64.3
Haze_06475 Corylus avellana HOM05D007781 ORTHO05D009769 1.1e-17 94.0 93 77.4
Glyma.07G196200 Glycine max HOM05D007781 ORTHO05D009769 3.1e-17 92.4 92 75.0
CDE10G1000 Ceratophyllum demersum HOM05D007781 ORTHO05D009769 1.5e-16 90.1 96 72.9
Potri.004G043100 Populus trichocarpa HOM05D007781 ORTHO05D009769 2.6e-16 89.4 92 78.3
Aa31LG6G3610 Aethionema arabicum HOM05D007781 ORTHO05D009769 4.5e-16 88.6 127 59.8
Nitab4.5_0003432g0040 Nicotiana tabacum HOM05D007781 ORTHO05D009769 9.9e-16 87.4 93 74.2
Nn1g06568 Nelumbo nucifera HOM05D007781 ORTHO05D009769 1.3e-15 87.0 98 74.5
THA.LOC104812795 Tarenaya hassleriana HOM05D007781 ORTHO05D009769 1.3e-15 87.0 88 79.5
Nitab4.5_0007940g0030 Nicotiana tabacum HOM05D007781 ORTHO05D009769 3.8e-15 85.5 94 72.3
Phvul.002G234100 Phaseolus vulgaris HOM05D007781 ORTHO05D009769 4.9e-15 85.1 87 73.6
Hund21227 Selenicereus undatus HOM05D007781 ORTHO05D009769 4.9e-15 85.1 132 63.6
Cc02_g13310 Coffea canephora HOM05D007781 ORTHO05D009769 8.4e-15 84.3 88 80.7
Sopen02g023130 Solanum pennellii HOM05D007781 ORTHO05D009769 1.4e-14 83.6 95 71.6
Actinidia05631 Actinidia chinensis HOM05D007781 ORTHO05D009769 1.9e-14 83.2 130 69.2
Sp7g19740 Schrenkiella parvula HOM05D007781 ORTHO05D009769 1.9e-14 83.2 86 80.2
PGSC0003DMG400029720 Solanum tuberosum HOM05D007781 ORTHO05D009769 1.9e-14 83.2 95 71.6
VMungo0251G3178 Vigna mungo HOM05D007781 ORTHO05D009769 1.9e-14 83.2 87 73.6
CARHR228320 Cardamine hirsuta HOM05D007781 ORTHO05D009769 4.2e-14 82.0 87 73.6
Medtr4g088850 Medicago truncatula HOM05D007781 ORTHO05D009769 4.2e-14 82.0 82 62.2
A08p15070 Brassica napus HOM05D007781 ORTHO05D009769 5.4e-14 81.6 87 78.2
C03p83160 Brassica napus HOM05D001541 ORTHO05D009769 5.4e-14 81.6 87 78.2
CAN.G1164.27 Capsicum annuum HOM05D007781 ORTHO05D009769 1.6e-13 80.1 95 70.5
Lsat_1_v5_gn_7_21141 Lactuca sativa HOM05D007781 ORTHO05D009769 1.6e-13 80.1 91 75.8
Thhalv10026412m.g Eutrema salsugineum HOM05D007781 ORTHO05D009769 2.7e-13 79.3 86 77.9
HPP92_027869 Vanilla planifolia HOM05D007781 ORTHO05D009769 2.7e-13 79.3 93 67.7
BcaB03g11687 Brassica carinata HOM05D001738 ORTHO05D001644 3.5e-13 79.0 87 77.0
Solyc02g078270.3 Solanum lycopersicum HOM05D007781 ORTHO05D009769 1.0e-12 77.4 135 53.3
Oeu053970.1 Olea europaea HOM05D007781 ORTHO05D009769 1.3e-12 77.0 89 68.5
BcaC01g00689 Brassica carinata HOM05D001738 ORTHO05D001644 2.3e-12 76.3 87 75.9
BolC3t20599H Brassica oleracea HOM05D007781 ORTHO05D009769 2.3e-12 76.3 87 75.9
AT4G21610 Arabidopsis thaliana HOM05D007781 ORTHO05D009769 3.0e-12 75.9 86 75.6
MSTRG.14698 Avicennia marina HOM05D007781 ORTHO05D009769 3.0e-12 75.9 88 71.6
Carub.0007s1977 Capsella rubella HOM05D007781 ORTHO05D009769 3.0e-12 75.9 97 70.1
TWI38G0207 Tripterygium wilfordii HOM05D007781 ORTHO05D009769 3.0e-12 75.9 81 61.7
AL7G32390 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 3.9e-12 75.5 86 74.4
Migut.H01490 Erythranthe guttata HOM05D007781 ORTHO05D009769 6.7e-12 74.7 88 70.5
DCAR_028076 Daucus carota HOM05D007781 ORTHO05D009769 8.7e-12 74.3 41 78.0
Lalb_Chr16g0383721 Lupinus albus HOM05D007781 ORTHO05D009769 1.1e-11 73.9 93 68.8
Os01g0612700 Oryza sativa ssp. japonica HOM05D021202 ORTHO05D009769 1.9e-11 73.2 100 66.0
Ah.14g089440 Amaranthus hybridus HOM05D007781 ORTHO05D009769 2.5e-11 72.8 85 45.9
CDE10G0168 Ceratophyllum demersum HOM05D007781 ORTHO05D009769 2.5e-11 72.8 82 76.8
SGA_v2.0_scaffold49G18292 Striga asiatica HOM05D007781 ORTHO05D009769 7.4e-11 71.2 89 68.5
HanXRQChr04g0124061 Helianthus annuus HOM05D007781 ORTHO05D009769 4.8e-10 68.6 88 73.9
Aqoxy1G02434 Aquilegia oxysepala HOM05D007781 ORTHO05D009769 1.8e-09 66.6 93 64.5
Peaxi162Scf00736g00429 Petunia axillaris HOM05D007781 ORTHO05D009769 1.8e-09 66.6 41 68.3
ECA236G0601 Erigeron canadensis HOM05D007781 ORTHO05D009769 3.1e-09 65.9 88 72.7
unitig_744.g24534 Utricularia gibba HOM05D007781 ORTHO05D009769 2.6e-08 62.8 84 67.9
CSS0040858 Camellia sinensis var. sinensis HOM05D007781 ORTHO05D009769 3.4e-08 62.4 39 69.2
SHI01775 Sapria himalayana HOM05D007781 ORTHO05D009769 4.5e-08 62.0 41 70.7
Sed0017721 Sechium edule HOM05D007781 ORTHO05D009769 9.9e-08 60.8 41 63.4
PSO541G0656 Papaver somniferum HOM05D007781 ORTHO05D009769 1.3e-07 60.5 86 67.4
PSO675G6168 Papaver somniferum HOM05D007781 ORTHO05D009769 1.3e-07 60.5 86 68.6
vmacro14163 Vaccinium macrocarpon HOM05D007781 ORTHO05D009769 1.7e-07 60.1 41 61.0
vmacro00338 Vaccinium macrocarpon HOM05D007781 ORTHO05D002106 3.8e-07 58.9 40 60.0
Cfa000439 Carpinus fangiana HOM05D007781 ORTHO05D009769 1.1e-06 57.4 93 36.6
MELO3C007039.2 Cucumis melo HOM05D002138 ORTHO05D002106 2.4e-06 56.2 101 55.4


User provided reference genes

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