Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0016355 Sechium edule HOM05D005201 ORTHO05D006139 2.6e-79 298.9 176 100.0
MELO3C016255.2 Cucumis melo HOM05D005201 ORTHO05D006139 2.3e-64 249.2 179 71.5
MD06G1017600 Malus domestica HOM05D005201 ORTHO05D006139 2.0e-55 219.5 168 82.1
COL.COLO4_16707 Corchorus olitorius HOM05D005201 ORTHO05D006139 2.6e-55 219.2 165 80.0
CANSAT21G0726 Cannabis sativa HOM05D005201 ORTHO05D006139 4.4e-55 218.4 168 79.2
MD00G1078600 Malus domestica HOM05D005201 ORTHO05D006139 8.3e-54 214.2 168 78.6
ClCG07G011320 Citrullus lanatus HOM05D005201 ORTHO05D006139 5.4e-53 211.5 176 77.3
Potri.001G129800 Populus trichocarpa HOM05D005201 ORTHO05D006139 5.4e-53 211.5 166 79.5
TAR375G0792 Trochodendron aralioides HOM05D005201 ORTHO05D006139 5.4e-53 211.5 173 74.0
Atru.chr6.2111 Acer truncatum HOM05D005201 ORTHO05D006139 2.0e-52 209.5 175 76.0
Aqoxy3G02454 Aquilegia oxysepala HOM05D005201 ORTHO05D006139 5.9e-52 208.0 172 75.6
CsaV3_4G006880 Cucumis sativus L. HOM05D005201 ORTHO05D006139 8.6e-51 204.1 176 73.9
Actinidia03317 Actinidia chinensis HOM05D005201 ORTHO05D006139 5.6e-50 201.4 165 77.0
Duzib205G0777 Durio zibethinus HOM05D005201 ORTHO05D006139 5.6e-50 201.4 165 77.0
CSS0000299 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 2.8e-49 199.1 149 79.2
CSS0007100 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 4.7e-49 198.4 149 79.9
Actinidia25720 Actinidia chinensis HOM05D005201 ORTHO05D006139 1.4e-48 196.8 162 75.3
Sed0020489 Sechium edule HOM05D005201 ORTHO05D006139 3.1e-48 195.7 171 77.8
TWI60G0094 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 3.1e-48 195.7 165 74.5
CAN.G947.20 Capsicum annuum HOM05D005201 ORTHO05D006139 5.2e-48 194.9 161 75.2
CAN.G1741.1 Capsicum annuum HOM05D005201 ORTHO05D006139 7.5e-47 191.0 166 72.9
Peaxi162Scf00045g01329 Petunia axillaris HOM05D005201 ORTHO05D006139 1.3e-46 190.3 160 75.0
Nitab4.5_0008438g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 2.2e-46 189.5 159 75.5
Lalb_Chr16g0380611 Lupinus albus HOM05D005201 ORTHO05D006139 4.9e-46 188.3 163 73.0
MSTRG.25759 Avicennia marina HOM05D005201 ORTHO05D006139 1.4e-45 186.8 165 66.1
Glyma.01G150400 Glycine max HOM05D005201 ORTHO05D006139 2.4e-45 186.0 163 74.8
GSVIVG01036941001 Vitis vinifera HOM05D005201 ORTHO05D006139 4.1e-45 185.3 166 72.9
FvH4_5g24200 Fragaria vesca HOM05D005201 ORTHO05D006139 9.2e-45 184.1 173 54.3
FAN13G2355 Fragaria x ananassa HOM05D005201 ORTHO05D006139 9.2e-45 184.1 173 54.3
FAN18G1178 Fragaria x ananassa HOM05D005201 ORTHO05D006139 9.2e-45 184.1 173 54.3
Nitab4.5_0001327g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 2.0e-44 183.0 146 77.4
Solyc08g005910.3 Solanum lycopersicum HOM05D005201 ORTHO05D006139 2.0e-44 183.0 159 74.2
Sopen08g001880 Solanum pennellii HOM05D005201 ORTHO05D006139 2.0e-44 183.0 159 74.2
Nitab4.5_0009069g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 2.7e-44 182.6 158 74.1
PGSC0003DMG400004473 Solanum tuberosum HOM05D005201 ORTHO05D006139 3.5e-44 182.2 159 74.2
BcaC04g23459 Brassica carinata HOM05D005201 ORTHO05D006139 4.6e-44 181.8 164 72.0
BraA09t36375Z Brassica rapa HOM05D001456 ORTHO05D002799 4.6e-44 181.8 177 67.8
Sabra01G0100200 Salix brachista HOM05D005201 ORTHO05D006139 6.0e-44 181.4 229 46.3
SalBow4G2195 Salvia bowleyana HOM05D005201 ORTHO05D006139 6.0e-44 181.4 165 66.7
THA.LOC104818333 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 7.8e-44 181.0 178 70.8
Prupe.5G018400 Prunus persica HOM05D005201 ORTHO05D006139 1.0e-43 180.6 165 57.0
A09p07260 Brassica napus HOM05D005201 ORTHO05D006139 1.7e-43 179.9 153 73.2
C09p08120 Brassica napus HOM05D005201 ORTHO05D006139 1.7e-43 179.9 153 73.2
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 1.7e-43 179.9 153 73.2
FAN04G1315 Fragaria x ananassa HOM05D005201 ORTHO05D006139 6.6e-43 177.9 173 53.2
QL12p002095 Quercus lobata HOM05D005201 ORTHO05D006139 1.1e-42 177.2 175 69.1
Thecc.03G324300 Theobroma cacao HOM05D005201 ORTHO05D006139 1.9e-42 176.4 166 68.1
ATR0829G041 Amborella trichopoda HOM05D005201 ORTHO05D006139 2.5e-42 176.0 173 66.5
FAN14G2110 Fragaria x ananassa HOM05D005201 ORTHO05D006139 3.3e-42 175.6 176 56.8
Thhalv10005013m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 4.3e-42 175.3 174 67.8
FAN10G0178 Fragaria x ananassa HOM05D002235 ORTHO05D006139 4.3e-42 175.3 155 60.6
Oeu057144.1 Olea europaea HOM05D005201 ORTHO05D006139 4.3e-42 175.3 146 75.3
FvH4_6g43270 Fragaria vesca HOM05D005201 ORTHO05D006139 7.3e-42 174.5 176 56.2
AL8G37890 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 1.2e-41 173.7 168 70.2
FAN05G2652 Fragaria x ananassa HOM05D005201 ORTHO05D006139 1.2e-41 173.7 168 57.7
Lsat_1_v5_gn_6_15560 Lactuca sativa HOM05D005201 ORTHO05D006139 1.2e-41 173.7 144 72.9
RcHm_v2.0_Chr2g0159541 Rosa chinensis HOM05D005201 ORTHO05D006139 1.2e-41 173.7 147 61.2
CDE01G0225 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 1.6e-41 173.3 169 54.4
Carub.0008s2190 Capsella rubella HOM05D005201 ORTHO05D006139 2.1e-41 172.9 159 70.4
Cc00_g08490 Coffea canephora HOM05D005201 ORTHO05D006139 2.1e-41 172.9 165 70.9
RcHm_v2.0_Chr7g0214011 Rosa chinensis HOM05D005201 ORTHO05D006139 2.8e-41 172.6 173 63.6
Sopen12g032120 Solanum pennellii HOM05D005201 ORTHO05D006139 2.8e-41 172.6 139 76.3
THA.LOC104801352 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 3.6e-41 172.2 179 65.4
AT5G61230 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 1.1e-40 170.6 159 68.6
Ca_25081_v3 Cicer arietinum L. HOM05D005201 ORTHO05D006139 1.1e-40 170.6 176 54.5
FAN08G2124 Fragaria x ananassa HOM05D005201 ORTHO05D006139 2.3e-40 169.5 173 50.9
SGA_v2.0_scaffold269G46298 Striga asiatica HOM05D005201 ORTHO05D006139 2.3e-40 169.5 152 57.9
Psat2g143240 Pisum sativum HOM05D005201 ORTHO05D006139 8.9e-40 167.5 176 64.8
Gohir.D08G167900 Gossypium hirsutum HOM05D005201 ORTHO05D006139 1.2e-39 167.2 163 66.3
Gorai.004G175100 Gossypium raimondii HOM05D005201 ORTHO05D006139 1.2e-39 167.2 163 66.3
Medtr5g026550 Medicago truncatula HOM05D005201 ORTHO05D006139 1.2e-39 167.2 176 52.8
Ciclev10002646m.g Citrus clementina HOM05D005201 ORTHO05D006139 2.6e-39 166.0 165 68.5
Cpa.g.sc137.21 Carica papaya HOM05D005201 ORTHO05D006139 3.4e-39 165.6 175 64.6
Gohir.A08G146800 Gossypium hirsutum HOM05D005201 ORTHO05D006139 3.4e-39 165.6 163 66.3
Sabra03G0071400 Salix brachista HOM05D005201 ORTHO05D006139 3.4e-39 165.6 166 66.9
PGSC0003DMG400029376 Solanum tuberosum HOM05D005201 ORTHO05D006139 3.4e-39 165.6 137 75.2
CiPaw.11G104600 Carya illinoinensis HOM05D005201 ORTHO05D006139 5.8e-39 164.9 173 64.2
Oeu002017.1 Olea europaea HOM05D005201 ORTHO05D006139 7.5e-39 164.5 146 73.3
Ah.12g056090 Amaranthus hybridus HOM05D005201 ORTHO05D006139 9.9e-39 164.1 176 54.0
Eucgr.D02584 Eucalyptus grandis HOM05D005201 ORTHO05D006139 9.9e-39 164.1 164 54.3
Sc07g0008280 Simmondsia chinensis HOM05D005201 ORTHO05D006139 9.9e-39 164.1 176 64.2
TPR.G39676 Trifolium pratense HOM05D005201 ORTHO05D006139 1.7e-38 163.3 176 65.3
arahy.Tifrunner.gnm1.ann1.02E8LK Arachis hypogaea HOM05D005201 ORTHO05D006139 3.7e-38 162.2 160 71.2
arahy.Tifrunner.gnm1.ann1.2T22I7 Arachis hypogaea HOM05D005201 ORTHO05D006139 3.7e-38 162.2 160 71.2
Potri.003G104400 Populus trichocarpa HOM05D005201 ORTHO05D006139 3.7e-38 162.2 166 63.9
Migut.A00504 Erythranthe guttata HOM05D005201 ORTHO05D006139 4.1e-37 158.7 165 61.8
Glyma.09G215400 Glycine max HOM05D005201 ORTHO05D006139 4.1e-37 158.7 163 68.1
SMO356G0124 Selaginella moellendorffii HOM05D005201 ORTHO05D006139 4.1e-37 158.7 145 70.3
Pp3c6_1190 Physcomitrium patens HOM05D005201 ORTHO05D006139 3.5e-36 155.6 149 66.4
MSTRG.11837 Avicennia marina HOM05D005201 ORTHO05D006139 6.0e-36 154.8 165 63.6
EL10Ac5g11893 Beta vulgaris HOM05D005201 ORTHO05D006139 6.0e-36 154.8 160 65.0
Lj2g0015792 Lotus japonicus HOM05D005201 ORTHO05D006139 1.7e-35 153.3 176 59.7
Rhsim01G0132000 Rhododendron simsii HOM05D005201 ORTHO05D006139 1.7e-35 153.3 165 48.5
PSO384G4870 Papaver somniferum HOM05D005201 ORTHO05D006139 2.3e-35 152.9 164 61.0
TWI32G1103 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 6.6e-35 151.4 165 63.0
PSO339G2945 Papaver somniferum HOM05D005201 ORTHO05D006139 1.1e-34 150.6 165 57.6
PGR031G3990 Punica granatum HOM05D005201 ORTHO05D006139 1.1e-34 150.6 175 63.4
PGR067G0002 Punica granatum HOM05D005201 ORTHO05D006139 1.1e-34 150.6 175 63.4
Manes.04G035300 Manihot esculenta HOM05D005201 ORTHO05D006139 1.9e-34 149.8 172 62.8
Ah.02g117370 Amaranthus hybridus HOM05D005201 ORTHO05D006139 2.5e-34 149.4 158 63.3
VMungo1215G2692 Vigna mungo HOM05D005201 ORTHO05D006139 3.3e-34 149.1 176 61.9
AUR62007435 Chenopodium quinoa HOM05D005201 ORTHO05D006139 4.3e-34 148.7 158 62.7
AUR62022383 Chenopodium quinoa HOM05D005201 ORTHO05D006139 4.3e-34 148.7 158 64.6
DCAR_000700 Daucus carota HOM05D005201 ORTHO05D006139 4.3e-34 148.7 165 52.1
Phvul.002G126500 Phaseolus vulgaris HOM05D005201 ORTHO05D006139 4.3e-34 148.7 163 63.2
Hund14321 Selenicereus undatus HOM05D005201 ORTHO05D006139 4.3e-34 148.7 160 61.2
CiPaw.12G072500 Carya illinoinensis HOM05D005201 ORTHO05D006139 5.6e-34 148.3 173 47.4
HanXRQChr08g0226681 Helianthus annuus HOM05D005201 ORTHO05D006139 7.3e-34 147.9 167 59.9
Lalb_Chr09g0325181 Lupinus albus HOM05D005201 ORTHO05D006139 9.5e-34 147.5 163 63.2
AUR62027303 Chenopodium quinoa HOM05D005201 ORTHO05D006139 1.2e-33 147.1 158 62.7
HanXRQChr07g0205241 Helianthus annuus HOM05D005201 ORTHO05D006139 1.2e-33 147.1 168 48.2
Dinv09437 Davidia involucrata HOM05D005201 ORTHO05D006139 6.2e-33 144.8 171 62.0
AT5G07840 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 8.1e-33 144.4 162 66.7
Hma1.2p1_0268F.1_g107720 Hydrangea macrophylla HOM05D005201 ORTHO05D006139 8.1e-33 144.4 162 59.3
Sp2g24460 Schrenkiella parvula HOM05D005201 ORTHO05D006139 8.1e-33 144.4 174 62.1
Aa31LG11G2130 Aethionema arabicum HOM05D005201 ORTHO05D006139 1.1e-32 144.1 178 62.4
DCAR_030956 Daucus carota HOM05D005201 ORTHO05D006139 1.1e-32 144.1 159 61.6
unitig_0.g2827 Utricularia gibba HOM05D005201 ORTHO05D006139 1.1e-32 144.1 165 63.0
Thhalv10014823m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 1.4e-32 143.7 180 61.7
Os02g0102600 Oryza sativa ssp. japonica HOM05D005201 ORTHO05D006139 1.8e-32 143.3 170 45.9
PSO782G0015 Papaver somniferum HOM05D005201 ORTHO05D006139 1.8e-32 143.3 162 63.6
SGA_v2.0_scaffold447G51751 Striga asiatica HOM05D003334 ORTHO05D004076 1.8e-32 143.3 143 60.8
ECA240G4218 Erigeron canadensis HOM05D005201 ORTHO05D006139 2.4e-32 142.9 174 56.9
Lsat_1_v5_gn_5_60900 Lactuca sativa HOM05D005201 ORTHO05D006139 2.4e-32 142.9 138 60.1
PSO063G1500 Papaver somniferum HOM05D005201 ORTHO05D006139 2.4e-32 142.9 162 63.6
CARHR274980 Cardamine hirsuta HOM05D005201 ORTHO05D006139 1.5e-31 140.2 174 60.9
CDE12G0445 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 2.6e-31 139.4 167 47.3
BraA03t13806Z Brassica rapa HOM05D005201 ORTHO05D006139 1.3e-30 137.1 169 60.9
BcaC06g33218 Brassica carinata HOM05D005201 ORTHO05D006139 2.2e-30 136.3 169 60.9
BolC7t45014H Brassica oleracea HOM05D005201 ORTHO05D006139 2.2e-30 136.3 169 60.9
A03p46860 Brassica napus HOM05D005201 ORTHO05D006139 2.9e-30 136.0 169 60.4
Eucgr.B00905 Eucalyptus grandis HOM05D005201 ORTHO05D006139 2.9e-30 136.0 82 78.0
AL6G18180 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 4.9e-30 135.2 166 62.0
C07p44910 Brassica napus HOM05D005201 ORTHO05D006139 2.4e-29 132.9 170 60.0
Nitab4.5_0001159g0040 Nicotiana tabacum HOM05D005201 ORTHO05D006139 3.2e-29 132.5 159 64.8
AagrBONN_evm.TU.Sc2ySwM_344.4086 Anthoceros agrestis HOM05D005201 ORTHO05D006139 6.0e-28 128.3 108 54.6
Mapoly0093s0041 Marchantia polymorpha HOM05D005201 ORTHO05D006139 1.9e-26 123.2 144 63.2
FAN02G0543 Fragaria x ananassa HOM05D002235 ORTHO05D006252 5.6e-26 121.7 78 71.8
SEGI_37761 Sequoiadendron giganteum HOM05D005201 ORTHO05D006139 7.3e-26 121.3 162 58.0
Solyc12g096260.2 Solanum lycopersicum HOM05D005201 ORTHO05D006139 9.0e-24 114.4 103 75.7
vmacro21163 Vaccinium macrocarpon HOM05D005201 ORTHO05D006139 2.2e-22 109.8 131 45.8
Lsat_1_v5_gn_8_13820 Lactuca sativa HOM05D005201 ORTHO05D006139 9.3e-21 104.4 66 68.2
Lj8A408T7 Lonicera japonica HOM05D005201 ORTHO05D006139 2.3e-19 99.8 131 44.3
Haze_08003 Corylus avellana HOM05D005201 ORTHO05D006139 4.3e-18 95.5 135 42.2
Zm00001eb229310 Zea mays HOM05D005201 ORTHO05D006139 5.6e-18 95.1 117 44.4
Dinv37463 Davidia involucrata HOM05D005201 ORTHO05D006139 8.1e-17 91.3 97 76.3
Nn3g19216 Nelumbo nucifera HOM05D005201 ORTHO05D006139 1.8e-16 90.1 102 76.5
SGA_v2.0_scaffold2264G54095 Striga asiatica HOM05D005201 ORTHO05D006139 9.0e-16 87.8 110 40.9
CANSAT11G0816 Cannabis sativa HOM05D005201 ORTHO05D006139 1.3e-14 84.0 141 36.2
Peaxi162Scf00876g00121 Petunia axillaris HOM05D005201 ORTHO05D006139 2.2e-14 83.2 60 60.0


User provided reference genes

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