Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0016313 Sechium edule HOM05D003263 ORTHO05D004801 0.0e+00 1474.1 741 100.0
ClCG05G010610 Citrullus lanatus HOM05D003263 ORTHO05D004801 0.0e+00 1402.5 748 93.6
Sed0005557 Sechium edule HOM05D003263 ORTHO05D004801 0.0e+00 1399.8 746 93.3
CsaV3_3G017880 Cucumis sativus L. HOM05D003263 ORTHO05D004801 0.0e+00 1390.9 750 93.1
MELO3C020331.2 Cucumis melo HOM05D003263 ORTHO05D004801 0.0e+00 1378.2 750 92.1
Haze_14285 Corylus avellana HOM05D003263 ORTHO05D004801 0.0e+00 1296.2 746 86.6
MD09G1268900 Malus domestica HOM05D003263 ORTHO05D004801 0.0e+00 1289.6 750 85.2
Cfa007786 Carpinus fangiana HOM05D003263 ORTHO05D004801 0.0e+00 1288.5 747 86.5
Actinidia35722 Actinidia chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1285.8 748 84.6
MD17G1267300 Malus domestica HOM05D003263 ORTHO05D004801 0.0e+00 1285.8 750 84.7
TAR629G0765 Trochodendron aralioides HOM05D003263 ORTHO05D004801 0.0e+00 1279.6 750 84.7
Potri.017G136133 Populus trichocarpa HOM05D003263 ORTHO05D004801 0.0e+00 1278.5 747 84.3
Prupe.3G165400 Prunus persica HOM05D003263 ORTHO05D004801 0.0e+00 1276.2 749 84.2
QL02p059434 Quercus lobata HOM05D003263 ORTHO05D004801 0.0e+00 1276.2 748 84.6
TWI74G0116 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 0.0e+00 1276.2 748 83.7
TWI77G0544 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 0.0e+00 1274.6 748 83.6
Dinv19049 Davidia involucrata HOM05D003263 ORTHO05D004801 0.0e+00 1273.5 748 83.8
Potri.004G082800 Populus trichocarpa HOM05D003263 ORTHO05D004801 0.0e+00 1273.5 743 84.3
FAN23G0774 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1271.5 741 84.5
Ciclev10019002m.g Citrus clementina HOM05D003263 ORTHO05D004801 0.0e+00 1269.6 743 84.0
CiPaw.03G074100 Carya illinoinensis HOM05D003263 ORTHO05D004801 0.0e+00 1267.7 750 84.1
FvH4_1g30070 Fragaria vesca HOM05D003263 ORTHO05D004801 0.0e+00 1266.1 741 84.3
FAN26G0816 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1266.1 743 84.0
Manes.02G078500 Manihot esculenta HOM05D003263 ORTHO05D004801 0.0e+00 1264.6 748 83.6
Atru.chr1.2038 Acer truncatum HOM05D003263 ORTHO05D004801 0.0e+00 1262.3 743 83.6
Cpa.g.sc116.77 Carica papaya HOM05D003263 ORTHO05D004801 0.0e+00 1260.4 746 83.4
CSS0018871 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 0.0e+00 1259.2 746 83.4
RcHm_v2.0_Chr3g0491991 Rosa chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1258.8 744 82.8
arahy.Tifrunner.gnm1.ann1.AUXW6G Arachis hypogaea HOM05D003263 ORTHO05D004801 0.0e+00 1258.4 743 82.8
Gohir.D07G183900 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1256.1 749 83.3
CAN.G222.62 Capsicum annuum HOM05D003263 ORTHO05D004801 0.0e+00 1255.4 744 83.2
Gorai.001G204300 Gossypium raimondii HOM05D003263 ORTHO05D004801 0.0e+00 1253.4 749 83.7
HanXRQChr07g0191741 Helianthus annuus HOM05D003263 ORTHO05D004801 0.0e+00 1253.4 745 82.7
Eucgr.J01621 Eucalyptus grandis HOM05D003263 ORTHO05D004801 0.0e+00 1253.0 748 82.1
Lj6g0025109 Lotus japonicus HOM05D003263 ORTHO05D004801 0.0e+00 1253.0 746 82.3
Duzib133G1400 Durio zibethinus HOM05D003263 ORTHO05D004801 0.0e+00 1251.5 750 82.8
Peaxi162Scf00464g00325 Petunia axillaris HOM05D003263 ORTHO05D004801 0.0e+00 1251.1 745 83.0
MSTRG.3699 Avicennia marina HOM05D003263 ORTHO05D004801 0.0e+00 1249.6 742 83.7
Gohir.A07G176600 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1249.6 749 83.3
Nitab4.5_0011135g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 0.0e+00 1248.4 744 83.1
FAN19G0316 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1248.0 710 85.9
Aqoxy3G04075 Aquilegia oxysepala HOM05D003263 ORTHO05D004801 0.0e+00 1247.3 735 84.2
SGA_v2.0_scaffold2G00947 Striga asiatica HOM05D003263 ORTHO05D004801 0.0e+00 1247.3 746 82.3
Oeu030292.1 Olea europaea HOM05D003263 ORTHO05D004801 0.0e+00 1246.9 779 80.0
Thecc.04G063600 Theobroma cacao HOM05D003263 ORTHO05D004801 0.0e+00 1246.5 749 82.8
Sopen11g006260 Solanum pennellii HOM05D003263 ORTHO05D004801 0.0e+00 1246.1 741 83.1
CANSAT56G4352 Cannabis sativa HOM05D003263 ORTHO05D004801 0.0e+00 1245.7 749 82.2
Glyma.11G214800 Glycine max HOM05D003263 ORTHO05D004801 0.0e+00 1245.7 748 82.1
VMungo1383G2082 Vigna mungo HOM05D003263 ORTHO05D004801 0.0e+00 1245.7 747 82.2
COL.COLO4_13315 Corchorus olitorius HOM05D003263 ORTHO05D004801 0.0e+00 1245.3 748 82.9
DCAR_014159 Daucus carota HOM05D003263 ORTHO05D004801 0.0e+00 1245.3 748 83.3
Duzib138G0925 Durio zibethinus HOM05D003263 ORTHO05D004801 0.0e+00 1245.3 749 82.5
Solyc11g011470.2 Solanum lycopersicum HOM05D003263 ORTHO05D004801 0.0e+00 1245.0 742 83.0
Phvul.001G229000 Phaseolus vulgaris HOM05D003263 ORTHO05D004801 0.0e+00 1244.6 747 82.2
TPR.G23206 Trifolium pratense HOM05D003263 ORTHO05D004801 0.0e+00 1242.3 747 81.9
PGSC0003DMG400013309 Solanum tuberosum HOM05D003263 ORTHO05D004801 0.0e+00 1241.5 741 82.9
MSTRG.15657 Avicennia marina HOM05D003263 ORTHO05D004801 0.0e+00 1240.7 745 82.3
ECA238G3173 Erigeron canadensis HOM05D003263 ORTHO05D004801 0.0e+00 1239.9 746 81.9
Psat5g119880 Pisum sativum HOM05D003263 ORTHO05D004801 0.0e+00 1238.0 748 81.4
Rhsim08G0019700 Rhododendron simsii HOM05D003263 ORTHO05D004801 0.0e+00 1236.1 802 78.2
Glyma.18G041700 Glycine max HOM05D003263 ORTHO05D004801 0.0e+00 1235.7 746 81.5
HanXRQChr14g0444641 Helianthus annuus HOM05D003263 ORTHO05D004801 0.0e+00 1235.7 745 81.9
Lalb_Chr18g0053541 Lupinus albus HOM05D003263 ORTHO05D004801 0.0e+00 1234.9 746 81.0
Gorai.001G197100 Gossypium raimondii HOM05D003263 ORTHO05D004801 0.0e+00 1233.4 751 81.1
PSO017G4553 Papaver somniferum HOM05D003263 ORTHO05D004801 0.0e+00 1231.5 757 81.6
Ca_17086_v3 Cicer arietinum L. HOM05D003263 ORTHO05D004801 0.0e+00 1231.1 748 80.9
PSO478G1645 Papaver somniferum HOM05D003263 ORTHO05D004801 0.0e+00 1229.5 757 81.4
Migut.K00926 Erythranthe guttata HOM05D003263 ORTHO05D004801 0.0e+00 1226.5 743 81.0
PGR042G3530 Punica granatum HOM05D003263 ORTHO05D004801 0.0e+00 1226.1 750 81.3
SalBow5G3125 Salvia bowleyana HOM05D003263 ORTHO05D004801 0.0e+00 1226.1 748 81.1
Medtr3g065130 Medicago truncatula HOM05D003263 ORTHO05D004801 0.0e+00 1220.7 748 80.3
unitig_748.g8633 Utricularia gibba HOM05D003263 ORTHO05D004801 0.0e+00 1214.9 752 80.3
Lsat_1_v5_gn_3_63961 Lactuca sativa HOM05D003263 ORTHO05D004801 0.0e+00 1210.7 748 79.3
THA.LOC104822242 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 0.0e+00 1204.1 750 79.6
Manes.01G120700 Manihot esculenta HOM05D003263 ORTHO05D004801 0.0e+00 1203.7 743 80.5
arahy.Tifrunner.gnm1.ann1.ZZ0CH2 Arachis hypogaea HOM05D003263 ORTHO05D004801 0.0e+00 1203.3 840 73.0
THA.LOC104805635 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 0.0e+00 1200.7 750 79.7
EL10Ac2g03207 Beta vulgaris HOM05D003263 ORTHO05D004801 0.0e+00 1199.9 749 79.8
CARHR215400 Cardamine hirsuta HOM05D003263 ORTHO05D004801 0.0e+00 1198.7 747 79.1
Hund13092 Selenicereus undatus HOM05D003263 ORTHO05D004801 0.0e+00 1197.2 690 83.9
Zm00001eb216210 Zea mays HOM05D003263 ORTHO05D004801 0.0e+00 1196.0 707 82.2
Ah.10g032470 Amaranthus hybridus HOM05D003263 ORTHO05D004801 0.0e+00 1195.6 737 80.7
Migut.H02232 Erythranthe guttata HOM05D003263 ORTHO05D004801 0.0e+00 1194.9 749 80.0
Os03g0713400 Oryza sativa ssp. japonica HOM05D003263 ORTHO05D004801 0.0e+00 1194.5 744 78.6
Aa31LG9G17530 Aethionema arabicum HOM05D003263 ORTHO05D004801 0.0e+00 1194.1 746 78.7
BcaB06g27086 Brassica carinata HOM05D003263 ORTHO05D004801 0.0e+00 1193.7 749 78.9
AUR62037782 Chenopodium quinoa HOM05D003263 ORTHO05D004801 0.0e+00 1193.3 748 79.1
BraA04t16733Z Brassica rapa HOM05D003263 ORTHO05D004801 0.0e+00 1192.9 749 78.9
A04p10660 Brassica napus HOM05D003263 ORTHO05D004801 0.0e+00 1192.6 749 78.9
Zm00001eb055050 Zea mays HOM05D003263 ORTHO05D004801 0.0e+00 1192.6 741 79.4
AL1G43210 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 0.0e+00 1192.2 747 78.4
C04p44380 Brassica napus HOM05D003263 ORTHO05D004801 0.0e+00 1191.4 749 78.8
Ah.10g032480 Amaranthus hybridus HOM05D003263 ORTHO05D004801 0.0e+00 1191.0 743 79.9
AT5G37510 Arabidopsis thaliana HOM05D003263 ORTHO05D004801 0.0e+00 1191.0 748 78.3
Thhalv10027640m.g Eutrema salsugineum HOM05D003263 ORTHO05D004801 0.0e+00 1189.5 749 78.2
Carub.0007s3268 Capsella rubella HOM05D003263 ORTHO05D004801 0.0e+00 1188.3 748 77.9
BcaC02g09578 Brassica carinata HOM05D003263 ORTHO05D004801 0.0e+00 1186.8 749 78.5
BolC4t26009H Brassica oleracea HOM05D003263 ORTHO05D004801 0.0e+00 1186.8 749 78.5
Aa31LG9G17520 Aethionema arabicum HOM05D003263 ORTHO05D004801 0.0e+00 1186.0 752 77.9
Sc14g0006900 Simmondsia chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1184.9 748 79.0
Cc07_g13220 Coffea canephora HOM05D003263 ORTHO05D004801 0.0e+00 1174.8 658 87.1
AL7G46270 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 0.0e+00 1172.1 781 75.0
HPP92_020298 Vanilla planifolia HOM05D003263 ORTHO05D004801 0.0e+00 1171.8 718 79.2
Lalb_Chr15g0085021 Lupinus albus HOM05D003263 ORTHO05D004801 0.0e+00 1161.4 745 77.0
CDE05G1320 Ceratophyllum demersum HOM05D003263 ORTHO05D004801 0.0e+00 1160.6 729 78.2
SGA_v2.0_scaffold108G30966 Striga asiatica HOM05D003263 ORTHO05D004801 0.0e+00 1159.1 747 77.6
Gohir.D07G176300 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1156.4 658 85.3
Gohir.A07G170100 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1153.7 658 85.0
Nitab4.5_0006562g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 0.0e+00 1132.9 664 84.3
AUR62042225 Chenopodium quinoa HOM05D003263 ORTHO05D004801 0.0e+00 1129.8 747 75.9
ATR0118G003 Amborella trichopoda HOM05D003263 ORTHO05D004801 0.0e+00 1125.2 740 74.6
SHI30113 Sapria himalayana HOM05D003263 ORTHO05D004801 0.0e+00 1124.0 746 75.3
GSVIVG01030914001 Vitis vinifera HOM05D003263 ORTHO05D004801 0.0e+00 1117.8 658 84.5
MBI19_g09384_MAGBIO Magnolia biondii HOM05D003263 ORTHO05D004801 0.0e+00 1104.0 1054 57.6
vmacro18524 Vaccinium macrocarpon HOM05D003263 ORTHO05D004801 0.0e+00 1102.0 749 75.6
CDE05G1041 Ceratophyllum demersum HOM05D003263 ORTHO05D004801 0.0e+00 1088.9 729 73.9
Nn4g24447 Nelumbo nucifera HOM05D003263 ORTHO05D004801 6.1e-308 1060.4 624 83.8
Dinv28178 Davidia involucrata HOM05D003263 ORTHO05D004801 2.1e-300 1035.4 750 72.0
SMO331G0029 Selaginella moellendorffii HOM05D003263 ORTHO05D004801 7.0e-288 993.8 677 69.7
AagrBONN_evm.TU.Sc2ySwM_228.2430 Anthoceros agrestis HOM05D003263 ORTHO05D004801 2.3e-283 978.8 681 69.0
Pp3c1_34100 Physcomitrium patens HOM05D003263 ORTHO05D004801 4.4e-282 974.5 675 70.5
Pp3c1_34110 Physcomitrium patens HOM05D003263 ORTHO05D004801 4.4e-282 974.5 675 70.5
Mapoly0153s0030 Marchantia polymorpha HOM05D003263 ORTHO05D004801 1.3e-281 973.0 683 69.0
Pp3c19_19270 Physcomitrium patens HOM05D003263 ORTHO05D004801 1.7e-281 972.6 690 69.1
Pp3c1_34140 Physcomitrium patens HOM05D003263 ORTHO05D004801 3.7e-281 971.5 675 70.4
arahy.Tifrunner.gnm1.ann1.5H82NF Arachis hypogaea HOM05D003263 ORTHO05D004801 2.6e-258 895.6 593 75.9
arahy.Tifrunner.gnm1.ann1.RIP12T Arachis hypogaea HOM05D003263 ORTHO05D004801 1.0e-254 883.6 593 75.4
CBR_g6354 Chara braunii HOM05D003263 ORTHO05D004801 2.6e-250 869.0 679 62.0
Cre12.g535950 Chlamydomonas reinhardtii HOM05D003263 ORTHO05D004801 3.2e-232 808.9 680 58.8
MCO08G340 Micromonas commoda HOM05D003263 ORTHO05D004801 2.4e-227 792.7 695 58.3
PRCOL_00000346 Prasinoderma coloniale HOM05D003263 ORTHO05D004801 4.4e-213 745.3 676 56.8
TAR371G0371 Trochodendron aralioides HOM05D003263 ORTHO05D004801 4.2e-208 728.8 670 61.2
Cfa025667 Carpinus fangiana HOM05D003263 ORTHO05D004801 4.7e-199 698.7 680 52.9
Haze_26802 Corylus avellana HOM05D003263 ORTHO05D004801 1.2e-173 614.4 731 46.4
arahy.Tifrunner.gnm1.ann1.HY7M04 Arachis hypogaea HOM05D000164 ORTHO05D004801 1.2e-162 577.8 361 77.6
Oeu062704.1 Olea europaea HOM05D003263 ORTHO05D004801 2.1e-159 567.0 322 87.0
SpUN1596_0010 Schrenkiella parvula HOM05D003263 ORTHO05D004801 9.2e-155 551.6 305 87.2
Thecc.K0008100 Theobroma cacao HOM05D003263 ORTHO05D004801 3.4e-141 506.5 302 84.8
arahy.Tifrunner.gnm1.ann1.Z93KCA Arachis hypogaea HOM05D003263 ORTHO05D004801 2.4e-131 473.8 301 79.7
Oeu062706.1 Olea europaea HOM05D003263 ORTHO05D004801 5.1e-129 466.1 309 74.1
SpUn1854_0010 Schrenkiella parvula HOM05D003263 ORTHO05D004801 5.1e-121 439.5 294 72.1
Potri.017G136950 Populus trichocarpa HOM05D003263 ORTHO05D004801 2.7e-114 417.2 236 83.9
CSS0049015 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 3.4e-101 373.6 298 66.8
Sabra17G0054900 Salix brachista HOM05D003263 ORTHO05D004801 3.4e-101 373.6 241 77.2
CSS0039899 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 3.2e-99 367.1 300 65.0
Thecc.K0008200 Theobroma cacao HOM05D003263 ORTHO05D004801 7.2e-99 365.9 219 82.2
Eucgr.J01637 Eucalyptus grandis HOM05D003263 ORTHO05D004801 7.7e-85 319.3 218 72.9
Oeu039332.1 Olea europaea HOM05D003263 ORTHO05D004801 1.4e-73 282.0 172 77.3
Haze_27240 Corylus avellana HOM05D003263 ORTHO05D004801 4.7e-66 256.9 366 39.9
arahy.Tifrunner.gnm1.ann1.VKQW11 Arachis hypogaea HOM05D003263 ORTHO05D004801 3.0e-65 254.2 126 94.4
Actinidia28797 Actinidia chinensis HOM05D003263 ORTHO05D004801 9.8e-64 249.2 392 43.9
SEGI_21193 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 2.9e-63 247.7 144 81.9
MD16G1264300 Malus domestica HOM05D003263 ORTHO05D004801 7.8e-61 239.6 260 53.5
arahy.Tifrunner.gnm1.ann1.SN393R Arachis hypogaea HOM05D003263 ORTHO05D004801 3.6e-58 230.7 114 93.9
SEGI_05320 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 7.1e-46 189.9 117 79.5
HanXRQChr17g0559491 Helianthus annuus HOM05D003263 ORTHO05D004801 1.5e-43 182.2 140 68.6
Sabra17G0112400 Salix brachista HOM05D003263 ORTHO05D003497 4.0e-41 174.1 122 71.3
SEGI_04560 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 4.0e-41 174.1 144 62.5
VMungo0647G1524 Vigna mungo HOM05D003263 ORTHO05D004801 3.8e-39 167.5 102 72.5
QL04p097132 Quercus lobata HOM05D003263 ORTHO05D000041 2.5e-35 154.8 85 83.5
CBR_g44347 Chara braunii HOM05D003263 ORTHO05D004801 2.2e-31 141.7 142 49.3
Ca_19082_v3 Cicer arietinum L. HOM05D003263 ORTHO05D004801 7.1e-30 136.7 83 80.7
Migut.M00197 Erythranthe guttata HOM05D003263 ORTHO05D004801 1.6e-29 135.6 135 57.8
Hund13091 Selenicereus undatus HOM05D003263 ORTHO05D004801 1.3e-28 132.5 105 61.9
Cc04_g05630 Coffea canephora HOM05D003263 ORTHO05D004801 9.6e-27 126.3 134 56.0
MD16G1264400 Malus domestica HOM05D003263 ORTHO05D004801 8.1e-26 123.2 61 91.8
Hma1.2p1_1425F.1_g282850 Hydrangea macrophylla HOM05D003263 ORTHO05D004801 1.2e-24 119.4 99 65.7
CBR_g26339 Chara braunii HOM05D004987 ORTHO05D005960 1.1e-22 112.8 220 30.5
CSS0022568 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 2.8e-18 98.2 141 47.5
TPR.G18971 Trifolium pratense HOM05D003263 ORTHO05D004801 7.6e-16 90.1 56 78.6
QL08p053439 Quercus lobata HOM05D003263 ORTHO05D004801 1.7e-15 89.0 50 80.0
TPR.G11234 Trifolium pratense HOM05D003263 ORTHO05D004801 8.7e-12 76.6 42 90.5
SEGI_40032 Sequoiadendron giganteum HOM05D003263 ORTHO05D024792 1.5e-11 75.9 42 83.3
Cc00_g06720 Coffea canephora HOM05D003263 ORTHO05D004801 1.6e-10 72.4 38 92.1
Psat2g105960 Pisum sativum HOM05D000610 ORTHO05D037361 5.5e-06 57.4 32 78.1


User provided reference genes

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