Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0016234 Sechium edule HOM05D004032 ORTHO05D004462 3.2e-81 305.1 158 100.0
Sed0024584 Sechium edule HOM05D004032 ORTHO05D004462 2.4e-44 182.6 155 65.2
ClCG02G012390 Citrullus lanatus HOM05D004032 ORTHO05D004462 2.4e-36 156.0 179 54.2
MELO3C020862.2 Cucumis melo HOM05D004032 ORTHO05D004462 3.1e-36 155.6 178 54.5
CsaV3_2G016520 Cucumis sativus L. HOM05D004032 ORTHO05D004462 7.0e-36 154.5 178 53.9
TWI09G0556 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 6.0e-19 98.2 174 42.0
vmacro17992 Vaccinium macrocarpon HOM05D004032 ORTHO05D004462 6.6e-18 94.7 174 39.1
TPR.G23878 Trifolium pratense HOM05D004032 ORTHO05D004462 1.1e-17 94.0 197 35.0
TWI53G0135 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 1.1e-17 94.0 166 43.4
FAN28G1831 Fragaria x ananassa HOM05D004032 ORTHO05D004462 3.3e-17 92.4 184 38.0
Glyma.17G163400 Glycine max HOM05D004032 ORTHO05D004462 3.3e-17 92.4 209 34.9
VMungo0251G2494 Vigna mungo HOM05D004032 ORTHO05D004462 3.3e-17 92.4 204 34.8
Lj4g0009335 Lotus japonicus HOM05D004032 ORTHO05D004462 4.3e-17 92.0 192 38.0
Psat4g083520 Pisum sativum HOM05D004032 ORTHO05D004462 4.3e-17 92.0 198 34.8
Medtr4g095440 Medicago truncatula HOM05D004032 ORTHO05D004462 5.6e-17 91.7 198 34.3
Phvul.003G236700 Phaseolus vulgaris HOM05D004032 ORTHO05D004462 5.6e-17 91.7 204 34.8
Lalb_Chr09g0334051 Lupinus albus HOM05D004032 ORTHO05D004462 2.8e-16 89.4 190 35.8
COL.COLO4_11544 Corchorus olitorius HOM05D004032 ORTHO05D004462 4.7e-16 88.6 166 38.0
Haze_15306 Corylus avellana HOM05D004032 ORTHO05D004462 6.2e-16 88.2 212 34.4
FvH4_1g17290 Fragaria vesca HOM05D004032 ORTHO05D004462 6.2e-16 88.2 174 39.1
FAN19G2997 Fragaria x ananassa HOM05D004032 ORTHO05D004462 6.2e-16 88.2 174 39.1
Rhsim10G0102400 Rhododendron simsii HOM05D004032 ORTHO05D004462 1.4e-15 87.0 182 35.2
TWI73G0275 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 3.1e-15 85.9 151 39.7
vmacro05391 Vaccinium macrocarpon HOM05D004032 ORTHO05D004462 4.0e-15 85.5 177 33.9
Glyma.05G103900 Glycine max HOM05D004032 ORTHO05D004462 5.2e-15 85.1 204 33.3
Actinidia16438 Actinidia chinensis HOM05D004032 ORTHO05D004462 1.2e-14 84.0 186 40.3
CiPaw.01G006700 Carya illinoinensis HOM05D004032 ORTHO05D004462 1.2e-14 84.0 212 34.9
QL06p039858 Quercus lobata HOM05D004032 ORTHO05D004462 3.4e-14 82.4 205 33.2
Rhsim08G0095200 Rhododendron simsii HOM05D004032 ORTHO05D004462 3.4e-14 82.4 172 37.8
CsaV3_6G043920 Cucumis sativus L. HOM05D004032 ORTHO05D004462 4.4e-14 82.0 193 35.2
HanXRQChr12g0373191 Helianthus annuus HOM05D004032 ORTHO05D004462 4.4e-14 82.0 182 35.2
Thecc.01G069300 Theobroma cacao HOM05D004032 ORTHO05D004462 4.4e-14 82.0 199 33.2
Glyma.15G185500 Glycine max HOM05D004032 ORTHO05D004462 5.8e-14 81.6 168 36.3
RcHm_v2.0_Chr2g0107481 Rosa chinensis HOM05D004032 ORTHO05D004462 5.8e-14 81.6 186 36.0
arahy.Tifrunner.gnm1.ann1.L7L2H1 Arachis hypogaea HOM05D004032 ORTHO05D004462 9.8e-14 80.9 186 37.1
Ciclev10026503m.g Citrus clementina HOM05D004032 ORTHO05D004462 1.7e-13 80.1 197 32.5
Manes.13G113400 Manihot esculenta HOM05D004032 ORTHO05D004462 1.7e-13 80.1 209 33.5
PGR004G0357 Punica granatum HOM05D004032 ORTHO05D004462 1.7e-13 80.1 180 37.2
DCAR_025783 Daucus carota HOM05D004032 ORTHO05D004462 2.2e-13 79.7 218 33.9
Sed0022630 Sechium edule HOM05D004032 ORTHO05D004462 2.2e-13 79.7 184 37.5
Glyma.01G192400 Glycine max HOM05D004032 ORTHO05D004462 2.9e-13 79.3 204 33.3
arahy.Tifrunner.gnm1.ann1.7C4JLW Arachis hypogaea HOM05D004032 ORTHO05D004462 4.9e-13 78.6 186 37.1
Potri.005G145800 Populus trichocarpa HOM05D004032 ORTHO05D004462 6.4e-13 78.2 210 31.0
Duzib147G1493 Durio zibethinus HOM05D004032 ORTHO05D004462 8.3e-13 77.8 205 31.2
CiPaw.02G004200 Carya illinoinensis HOM05D004032 ORTHO05D004462 1.1e-12 77.4 215 34.4
ClCG01G017390 Citrullus lanatus HOM05D004032 ORTHO05D004462 1.1e-12 77.4 195 33.8
Dinv26906 Davidia involucrata HOM05D004032 ORTHO05D004462 1.1e-12 77.4 197 34.5
Lsat_1_v5_gn_4_162340 Lactuca sativa HOM05D004032 ORTHO05D004462 1.1e-12 77.4 184 35.3
Duzib187G1312 Durio zibethinus HOM05D004032 ORTHO05D004462 1.4e-12 77.0 199 32.2
HanXRQChr11g0322451 Helianthus annuus HOM05D004032 ORTHO05D004462 1.9e-12 76.6 180 34.4
Lalb_Chr16g0389141 Lupinus albus HOM05D004032 ORTHO05D004462 1.9e-12 76.6 190 33.7
Manes.12G111200 Manihot esculenta HOM05D004032 ORTHO05D004462 1.9e-12 76.6 216 33.3
TAR376G0432 Trochodendron aralioides HOM05D004032 ORTHO05D004462 1.9e-12 76.6 199 32.2
Lj2g0017817 Lotus japonicus HOM05D004032 ORTHO05D004462 2.4e-12 76.3 184 34.8
Dinv30069 Davidia involucrata HOM05D004032 ORTHO05D004462 4.1e-12 75.5 192 35.9
Glyma.11G049700 Glycine max HOM05D004032 ORTHO05D004462 7.1e-12 74.7 208 32.7
Actinidia21232 Actinidia chinensis HOM05D004032 ORTHO05D004462 9.2e-12 74.3 135 43.0
Eucgr.I00716 Eucalyptus grandis HOM05D004032 ORTHO05D004462 9.2e-12 74.3 197 33.0
GSVIVG01000145001 Vitis vinifera HOM05D004032 ORTHO05D004462 9.2e-12 74.3 203 35.0
Actinidia36441 Actinidia chinensis HOM05D004032 ORTHO05D004462 1.2e-11 73.9 190 33.7
Aqoxy6G02719 Aquilegia oxysepala HOM05D004032 ORTHO05D004462 1.2e-11 73.9 207 32.9
Gohir.A11G216800 Gossypium hirsutum HOM05D004032 ORTHO05D004462 1.2e-11 73.9 203 32.5
Gorai.007G221700 Gossypium raimondii HOM05D004032 ORTHO05D004462 1.6e-11 73.6 203 32.5
FAN26G2221 Fragaria x ananassa HOM05D004032 ORTHO05D004462 2.1e-11 73.2 182 36.3
Lalb_Chr05g0213571 Lupinus albus HOM05D004032 ORTHO05D004462 2.1e-11 73.2 207 34.3
Ah.02g125580 Amaranthus hybridus HOM05D004032 ORTHO05D004462 2.7e-11 72.8 190 33.2
Cpa.g.sc6.44 Carica papaya HOM05D004032 ORTHO05D004462 2.7e-11 72.8 197 33.0
Gohir.D11G206500 Gossypium hirsutum HOM05D004032 ORTHO05D004462 3.5e-11 72.4 202 32.2
Nitab4.5_0000868g0010 Nicotiana tabacum HOM05D004032 ORTHO05D004462 3.5e-11 72.4 196 35.7
Sabra05G0116500 Salix brachista HOM05D004032 ORTHO05D004462 3.5e-11 72.4 196 34.7
Gohir.A02G153200 Gossypium hirsutum HOM05D004032 ORTHO05D004462 4.6e-11 72.0 191 31.4
FAN23G1545 Fragaria x ananassa HOM05D004032 ORTHO05D004462 6.0e-11 71.6 184 35.3
Potri.007G053300 Populus trichocarpa HOM05D004032 ORTHO05D004462 6.0e-11 71.6 212 30.2
MSTRG.2833 Avicennia marina HOM05D004032 ORTHO05D004462 7.8e-11 71.2 177 35.6
AL8G43930 Arabidopsis lyrata HOM05D004032 ORTHO05D004462 1.0e-10 70.9 166 36.1
C07p24210 Brassica napus HOM05D004032 ORTHO05D004462 1.3e-10 70.5 91 48.4
BolC7t42948H Brassica oleracea HOM05D004032 ORTHO05D004462 1.3e-10 70.5 91 48.4
Carub.0008s2709 Capsella rubella HOM05D004032 ORTHO05D004462 1.7e-10 70.1 94 48.9
Gohir.D03G027200 Gossypium hirsutum HOM05D004032 ORTHO05D004462 1.7e-10 70.1 193 31.6
Lj4A160G62 Lonicera japonica HOM05D004032 ORTHO05D004462 2.3e-10 69.7 106 43.4
Oeu013283.1 Olea europaea HOM05D004032 ORTHO05D004462 2.3e-10 69.7 202 32.2
Gorai.003G028900 Gossypium raimondii HOM05D004032 ORTHO05D004462 3.0e-10 69.3 194 33.5
Oeu054187.1 Olea europaea HOM05D004032 ORTHO05D004462 3.9e-10 68.9 170 34.7
SalBow6G2131 Salvia bowleyana HOM05D004032 ORTHO05D004462 3.9e-10 68.9 157 35.0
arahy.Tifrunner.gnm1.ann1.4VG7J5 Arachis hypogaea HOM05D004032 ORTHO05D004462 5.1e-10 68.6 223 33.2
Aa31LG1G15950 Aethionema arabicum HOM05D004032 ORTHO05D004462 6.6e-10 68.2 115 44.3
PGSC0003DMG400024938 Solanum tuberosum HOM05D004032 ORTHO05D004462 8.6e-10 67.8 198 33.3
Actinidia11994 Actinidia chinensis HOM05D004032 ORTHO05D004462 1.1e-09 67.4 103 42.7
AT5G67390 Arabidopsis thaliana HOM05D004032 ORTHO05D004462 1.1e-09 67.4 102 44.1
MSTRG.23688 Avicennia marina HOM05D004032 ORTHO05D004462 1.1e-09 67.4 183 35.0
A07p16510 Brassica napus HOM05D004032 ORTHO05D004462 1.1e-09 67.4 118 41.5
BraA07t29375Z Brassica rapa HOM05D004032 ORTHO05D004462 1.1e-09 67.4 118 41.5
THA.LOC104827558 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 1.1e-09 67.4 105 46.7
BcaB02g09927 Brassica carinata HOM05D004032 ORTHO05D004462 1.5e-09 67.0 118 40.7
CAN.G1075.18 Capsicum annuum HOM05D004032 ORTHO05D004462 1.5e-09 67.0 209 33.0
CARHR280210 Cardamine hirsuta HOM05D004032 ORTHO05D004462 1.5e-09 67.0 102 45.1
Thhalv10005011m.g Eutrema salsugineum HOM05D004032 ORTHO05D004462 1.5e-09 67.0 94 46.8
BcaB04g20056 Brassica carinata HOM05D004032 ORTHO05D004462 1.9e-09 66.6 131 40.5
A02p44240 Brassica napus HOM05D004032 ORTHO05D004462 1.9e-09 66.6 179 34.6
BraA02t09348Z Brassica rapa HOM05D004032 ORTHO05D004462 1.9e-09 66.6 179 34.6
CSS0031607 Camellia sinensis var. sinensis HOM05D004032 ORTHO05D004462 1.9e-09 66.6 203 30.5
Oeu040591.1 Olea europaea HOM05D004032 ORTHO05D004462 1.9e-09 66.6 173 34.1
Oeu040592.1 Olea europaea HOM05D004032 ORTHO05D004462 1.9e-09 66.6 173 34.1
Phvul.002G012400 Phaseolus vulgaris HOM05D004032 ORTHO05D004462 1.9e-09 66.6 135 40.7
SGA_v2.0_scaffold15G07422 Striga asiatica HOM05D004032 ORTHO05D004462 1.9e-09 66.6 169 33.7
Prupe.6G223500 Prunus persica HOM05D004032 ORTHO05D004462 2.5e-09 66.2 224 32.1
C09p10940 Brassica napus HOM05D004032 ORTHO05D004462 3.3e-09 65.9 165 33.9
Solyc02g092590.3 Solanum lycopersicum HOM05D004032 ORTHO05D004462 3.3e-09 65.9 204 33.3
Sopen02g037160 Solanum pennellii HOM05D004032 ORTHO05D004462 3.3e-09 65.9 207 31.9
BraA09t36588Z Brassica rapa HOM05D004032 ORTHO05D004462 4.3e-09 65.5 90 48.9
CSS0002661 Camellia sinensis var. sinensis HOM05D004032 ORTHO05D004462 4.3e-09 65.5 203 30.5
DCAR_010831 Daucus carota HOM05D004032 ORTHO05D004462 4.3e-09 65.5 191 33.5
Hma1.2p1_0942F.1_g239820 Hydrangea macrophylla HOM05D004032 ORTHO05D004462 5.6e-09 65.1 206 29.6
Lsat_1_v5_gn_2_83781 Lactuca sativa HOM05D004032 ORTHO05D004462 5.6e-09 65.1 171 33.9
BcaC04g23221 Brassica carinata HOM05D004032 ORTHO05D004462 7.3e-09 64.7 165 33.3
BcaC06g34822 Brassica carinata HOM05D004032 ORTHO05D004462 7.3e-09 64.7 118 40.7
A09p09370 Brassica napus HOM05D004032 ORTHO05D004462 7.3e-09 64.7 90 48.9
BolC9t53989H Brassica oleracea HOM05D004032 ORTHO05D004462 7.3e-09 64.7 165 33.3
PSO541G5875 Papaver somniferum HOM05D004032 ORTHO05D004462 9.5e-09 64.3 195 30.3
BcaC03g18375 Brassica carinata HOM05D004032 ORTHO05D004462 1.2e-08 63.9 173 34.1
C02p64510 Brassica napus HOM05D004032 ORTHO05D004462 1.2e-08 63.9 173 34.1
BolC2t12515H Brassica oleracea HOM05D004032 ORTHO05D004462 1.2e-08 63.9 173 34.1
Gohir.A10G090100 Gossypium hirsutum HOM05D004032 ORTHO05D004462 1.2e-08 63.9 161 32.9
HanXRQChr14g0441881 Helianthus annuus HOM05D004032 ORTHO05D004462 1.2e-08 63.9 131 37.4
MD15G1293900 Malus domestica HOM05D004032 ORTHO05D004462 1.2e-08 63.9 233 27.5
Peaxi162Scf00264g00213 Petunia axillaris HOM05D004032 ORTHO05D004462 1.6e-08 63.5 218 30.7
Hund16386 Selenicereus undatus HOM05D004032 ORTHO05D004462 1.6e-08 63.5 99 43.4
VMungo1215G3265 Vigna mungo HOM05D004032 ORTHO05D004462 1.6e-08 63.5 144 36.1
MD02G1182600 Malus domestica HOM05D004032 ORTHO05D004462 2.1e-08 63.2 233 28.8
Hma1.2p1_0017F.1_g012150 Hydrangea macrophylla HOM05D004032 ORTHO05D004462 2.8e-08 62.8 182 30.8
Migut.H00365 Erythranthe guttata HOM05D004032 ORTHO05D004462 3.6e-08 62.4 191 34.0
Sp2g29270 Schrenkiella parvula HOM05D004032 ORTHO05D004462 3.6e-08 62.4 93 44.1
THA.LOC104821233 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 3.6e-08 62.4 111 39.6
Gohir.D10G098000 Gossypium hirsutum HOM05D004032 ORTHO05D004462 4.7e-08 62.0 162 32.1
Hund13934 Selenicereus undatus HOM05D004032 ORTHO05D004462 6.2e-08 61.6 208 30.8
Nitab4.5_0006689g0040 Nicotiana tabacum HOM05D004032 ORTHO05D004462 8.1e-08 61.2 74 48.6
THA.LOC104819252 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 8.1e-08 61.2 181 33.7
arahy.Tifrunner.gnm1.ann1.NPYP4Z Arachis hypogaea HOM05D004032 ORTHO05D004462 1.1e-07 60.8 140 35.7
Gorai.011G107600 Gossypium raimondii HOM05D004032 ORTHO05D004462 1.4e-07 60.5 161 32.3
Atru.chr3.192 Acer truncatum HOM05D004032 ORTHO05D004462 1.8e-07 60.1 104 38.5
Nn5g30527 Nelumbo nucifera HOM05D004032 ORTHO05D004462 2.3e-07 59.7 122 35.2
Atru.chr3.163 Acer truncatum HOM05D004032 ORTHO05D004462 3.1e-07 59.3 106 37.7
Oeu031171.1 Olea europaea HOM05D004032 ORTHO05D004462 3.1e-07 59.3 200 30.5
Oeu031172.1 Olea europaea HOM05D004032 ORTHO05D004462 3.1e-07 59.3 200 31.0
TAR628G1371 Trochodendron aralioides HOM05D004032 ORTHO05D004462 4.0e-07 58.9 120 39.2
HPP92_023691 Vanilla planifolia HOM05D004032 ORTHO05D004462 5.2e-07 58.5 186 30.1
Nn1g04611 Nelumbo nucifera HOM05D004032 ORTHO05D004462 6.8e-07 58.2 197 28.9
Lj7A88G34 Lonicera japonica HOM05D004032 ORTHO05D004462 8.9e-07 57.8 145 36.6
PSO675G6353 Papaver somniferum HOM05D004032 ORTHO05D004462 1.2e-06 57.4 196 28.6
Os03g0442900 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 2.0e-06 56.6 184 32.1
ECA232G3054 Erigeron canadensis HOM05D004032 ORTHO05D004462 2.6e-06 56.2 171 29.8
HPP92_007856 Vanilla planifolia HOM05D004032 ORTHO05D004462 3.4e-06 55.8 106 43.4
HPP92_023674 Vanilla planifolia HOM05D004032 ORTHO05D004462 4.4e-06 55.5 186 29.6
Zm00001eb214280 Zea mays HOM05D004032 ORTHO05D004462 4.4e-06 55.5 44 59.1
Cc07_g06860 Coffea canephora HOM05D004032 ORTHO05D004462 7.6e-06 54.7 144 37.5
SGA_v2.0_scaffold72G24091 Striga asiatica HOM05D004032 ORTHO05D004462 7.6e-06 54.7 96 42.7
Sc16g0000080 Simmondsia chinensis HOM05D004032 ORTHO05D004462 9.9e-06 54.3 167 31.1
Zm00001eb058240 Zea mays HOM05D004032 ORTHO05D004462 9.9e-06 54.3 37 67.6


User provided reference genes

Program Settings