Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0016197 Sechium edule HOM05D003798 ORTHO05D004652 1.5e-275 952.2 486 100.0
CsaV3_7G028050 Cucumis sativus L. HOM05D003798 ORTHO05D004652 6.8e-231 803.9 524 80.9
ClCG09G007110 Citrullus lanatus HOM05D003798 ORTHO05D004652 1.2e-227 793.1 550 78.0
Prupe.8G239400 Prunus persica HOM05D003798 ORTHO05D004652 1.1e-193 680.2 519 69.7
CANSAT25G1654 Cannabis sativa HOM05D003798 ORTHO05D004652 1.2e-192 676.8 535 67.7
RcHm_v2.0_Chr6g0290801 Rosa chinensis HOM05D003798 ORTHO05D004652 1.7e-189 666.4 527 67.4
Thecc.01G277100 Theobroma cacao HOM05D003798 ORTHO05D004652 1.7e-189 666.4 531 67.6
Dinv34765 Davidia involucrata HOM05D003798 ORTHO05D004652 2.9e-189 665.6 521 67.4
MD03G1263100 Malus domestica HOM05D003798 ORTHO05D004652 2.9e-189 665.6 519 68.0
Cfa006156 Carpinus fangiana HOM05D003798 ORTHO05D004652 6.4e-189 664.5 532 68.0
Gohir.D11G128600 Gossypium hirsutum HOM05D003798 ORTHO05D004652 1.4e-188 663.3 531 66.9
Gorai.007G137600 Gossypium raimondii HOM05D003798 ORTHO05D004652 1.4e-188 663.3 531 66.9
Gohir.A11G123400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 5.4e-188 661.4 531 66.9
MD11G1283900 Malus domestica HOM05D003798 ORTHO05D004652 6.0e-187 657.9 517 67.9
Dinv32922 Davidia involucrata HOM05D003798 ORTHO05D004652 7.8e-187 657.5 509 67.6
Ciclev10019577m.g Citrus clementina HOM05D003798 ORTHO05D004652 1.0e-186 657.1 521 66.8
QL12p021373 Quercus lobata HOM05D003798 ORTHO05D004652 1.3e-184 650.2 512 68.0
FvH4_2g23360 Fragaria vesca HOM05D003798 ORTHO05D004652 1.6e-184 649.8 514 67.5
FAN24G3171 Fragaria x ananassa HOM05D003798 ORTHO05D004652 1.6e-184 649.8 514 67.5
Phvul.001G152400 Phaseolus vulgaris HOM05D003798 ORTHO05D004652 3.6e-184 648.7 521 65.8
FAN20G2449 Fragaria x ananassa HOM05D003798 ORTHO05D004652 6.2e-184 647.9 514 67.1
FAN27G1242 Fragaria x ananassa HOM05D003798 ORTHO05D004652 5.3e-183 644.8 514 67.1
CiPaw.07G090900 Carya illinoinensis HOM05D003798 ORTHO05D004652 1.2e-182 643.7 545 65.9
VMungo1383G1837 Vigna mungo HOM05D003798 ORTHO05D004652 1.3e-181 640.2 538 63.9
CSS0049215 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 2.2e-181 639.4 524 65.5
Gorai.004G216500 Gossypium raimondii HOM05D003798 ORTHO05D004652 1.9e-180 636.3 508 66.3
Glyma.19G157300 Glycine max HOM05D003798 ORTHO05D004652 2.4e-180 636.0 521 64.3
Gohir.D08G204500 Gossypium hirsutum HOM05D003798 ORTHO05D004652 5.4e-180 634.8 508 66.1
TAR636G1714 Trochodendron aralioides HOM05D003798 ORTHO05D004652 7.1e-180 634.4 522 65.9
FAN15G2405 Fragaria x ananassa HOM05D003798 ORTHO05D004652 1.6e-179 633.3 515 66.4
Gohir.A08G186400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 6.0e-179 631.3 508 65.9
CSS0013750 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 4.3e-177 625.2 559 62.1
Potri.002G051800 Populus trichocarpa HOM05D003798 ORTHO05D004652 1.3e-176 623.6 529 63.3
vmacro02581 Vaccinium macrocarpon HOM05D003798 ORTHO05D004652 1.3e-176 623.6 519 64.5
Glyma.03G155100 Glycine max HOM05D003798 ORTHO05D004652 2.8e-176 622.5 522 64.0
GSVIVG01001160001 Vitis vinifera HOM05D003798 ORTHO05D004652 1.2e-174 617.1 539 63.8
PGR119G1379 Punica granatum HOM05D003798 ORTHO05D004652 2.0e-174 616.3 523 62.7
Rhsim13G0025900 Rhododendron simsii HOM05D003798 ORTHO05D004652 2.0e-174 616.3 530 63.0
Lj5g0015989 Lotus japonicus HOM05D003798 ORTHO05D004652 5.8e-174 614.8 524 62.2
Lalb_Chr06g0162961 Lupinus albus HOM05D003798 ORTHO05D004652 3.2e-172 609.0 521 61.6
arahy.Tifrunner.gnm1.ann1.Y8QVM3 Arachis hypogaea HOM05D003798 ORTHO05D004652 7.9e-171 604.4 533 60.6
arahy.Tifrunner.gnm1.ann1.PW6FZP Arachis hypogaea HOM05D003798 ORTHO05D004652 3.0e-170 602.4 532 60.5
Eucgr.H01469 Eucalyptus grandis HOM05D003798 ORTHO05D004652 5.1e-170 601.7 523 61.6
MELO3C015825.2 Cucumis melo HOM05D003798 ORTHO05D004652 2.5e-169 599.4 406 78.3
Lj2A1170T17 Lonicera japonica HOM05D003798 ORTHO05D004652 4.8e-168 595.1 552 59.8
Ca_08607_v3 Cicer arietinum L. HOM05D003798 ORTHO05D004652 5.3e-167 591.7 515 62.1
Sc05g0005620 Simmondsia chinensis HOM05D003798 ORTHO05D004652 4.5e-166 588.6 516 61.8
Nn4g26293 Nelumbo nucifera HOM05D003798 ORTHO05D004652 8.4e-165 584.3 506 62.6
Potri.005G210500 Populus trichocarpa HOM05D003798 ORTHO05D004652 2.5e-164 582.8 516 61.8
Haze_04695 Corylus avellana HOM05D003798 ORTHO05D004652 7.1e-164 581.3 538 61.3
Duzib133G0734 Durio zibethinus HOM05D003798 ORTHO05D004652 1.0e-162 577.4 484 66.1
Psat3g063960 Pisum sativum HOM05D003798 ORTHO05D004652 1.8e-162 576.6 514 60.7
TWI59G0387 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 2.3e-162 576.2 489 63.0
Lj1g0003787 Lotus japonicus HOM05D003798 ORTHO05D004652 3.9e-162 575.5 515 61.0
TPR.G9912 Trifolium pratense HOM05D003798 ORTHO05D004652 5.1e-162 575.1 508 61.6
TWI23G0664 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 2.1e-160 569.7 534 59.0
Medtr7g095030 Medicago truncatula HOM05D003798 ORTHO05D004652 3.6e-155 552.4 514 58.4
Manes.05G077300 Manihot esculenta HOM05D003798 ORTHO05D004652 6.7e-154 548.1 442 65.6
DCAR_002728 Daucus carota HOM05D003798 ORTHO05D004652 3.1e-151 539.3 522 56.7
Aqoxy2G03370 Aquilegia oxysepala HOM05D003798 ORTHO05D004652 1.0e-149 534.3 497 58.6
Sabra05G0160700 Salix brachista HOM05D003798 ORTHO05D004652 6.5e-149 531.6 563 54.7
Migut.D00308 Erythranthe guttata HOM05D003798 ORTHO05D004652 5.5e-148 528.5 517 58.6
Oeu047871.2 Olea europaea HOM05D003798 ORTHO05D004652 1.7e-144 516.9 570 51.6
ECA248G1795 Erigeron canadensis HOM05D003798 ORTHO05D004652 4.8e-144 515.4 513 55.8
Lsat_1_v5_gn_5_184661 Lactuca sativa HOM05D003798 ORTHO05D004652 5.3e-143 511.9 510 55.3
HanXRQChr15g0466731 Helianthus annuus HOM05D003798 ORTHO05D004652 1.7e-141 506.9 523 54.1
Actinidia09127 Actinidia chinensis HOM05D003798 ORTHO05D004652 2.5e-140 503.1 451 60.8
HanXRQChr01g0003001 Helianthus annuus HOM05D003798 ORTHO05D004652 8.8e-138 494.6 512 54.1
Lj1A47G33 Lonicera japonica HOM05D003798 ORTHO05D004652 1.2e-134 484.2 540 53.3
COL.COLO4_09077 Corchorus olitorius HOM05D003798 ORTHO05D004652 1.1e-132 477.6 455 58.7
PSO761G0144 Papaver somniferum HOM05D003798 ORTHO05D004652 9.7e-129 464.5 498 55.2
PSO210G1981 Papaver somniferum HOM05D003798 ORTHO05D004652 5.3e-127 458.8 498 54.0
Nitab4.5_0000759g0210 Nicotiana tabacum HOM05D003798 ORTHO05D004652 1.6e-126 457.2 543 50.5
SGA_v2.0_scaffold1G00488 Striga asiatica HOM05D003798 ORTHO05D004652 9.4e-124 448.0 533 50.8
CAN.G1549.7 Capsicum annuum HOM05D003798 ORTHO05D004652 1.3e-120 437.6 406 59.6
unitig_749.g13741 Utricularia gibba HOM05D003798 ORTHO05D004652 3.1e-111 406.4 470 49.1
ATR0332G031 Amborella trichopoda HOM05D003798 ORTHO05D004652 2.5e-108 396.7 489 45.4
Actinidia00771 Actinidia chinensis HOM05D003798 ORTHO05D004652 1.0e-106 391.3 323 63.2
Cpa.g.sc52.47 Carica papaya HOM05D003798 ORTHO05D004652 1.8e-103 380.6 351 61.0
Medtr4g095000 Medicago truncatula HOM05D003798 ORTHO05D004652 1.6e-102 377.5 358 57.5
MELO3C015827.2 Cucumis melo HOM05D003798 ORTHO05D004652 1.9e-100 370.5 394 56.6
arahy.Tifrunner.gnm1.ann1.SSYA5T Arachis hypogaea HOM05D003798 ORTHO05D004652 1.9e-95 354.0 422 48.3
arahy.Tifrunner.gnm1.ann1.97IXSS Arachis hypogaea HOM05D003798 ORTHO05D004652 3.7e-88 329.7 384 49.5
Atru.chr5.1458 Acer truncatum HOM05D003798 ORTHO05D004652 1.1e-76 291.6 201 73.6
Lsat_1_v5_gn_8_56480 Lactuca sativa HOM05D003798 ORTHO05D004652 2.9e-72 276.9 481 40.3
THA.LOC104801240 Tarenaya hassleriana HOM05D003798 ORTHO05D004652 1.7e-69 267.7 455 40.2
Nitab4.5_0007361g0010 Nicotiana tabacum HOM05D003798 ORTHO05D004652 8.7e-69 265.4 287 54.0
BcaC04g24012 Brassica carinata HOM05D003798 ORTHO05D004652 1.3e-64 251.5 424 39.6
C09p02260 Brassica napus HOM05D003798 ORTHO05D004652 2.4e-63 247.3 423 39.5
Carub.0006s3430 Capsella rubella HOM05D003798 ORTHO05D004652 4.2e-63 246.5 485 37.9
Thhalv10028579m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 5.4e-63 246.1 444 38.1
AT4G02760 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 1.3e-61 241.5 491 37.3
AL6G50220 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 3.0e-61 240.4 418 39.0
Cpa.g.sc52.48 Carica papaya HOM05D003798 ORTHO05D004652 1.1e-60 238.4 165 73.9
BcaC01g06734 Brassica carinata HOM05D003798 ORTHO05D004652 1.9e-60 237.7 423 37.8
Sp6g02780 Schrenkiella parvula HOM05D003798 ORTHO05D004652 3.3e-60 236.9 465 37.6
AL6G50260 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 7.4e-60 235.7 429 38.0
BolC9t53155H Brassica oleracea HOM05D003798 ORTHO05D004652 7.4e-60 235.7 446 37.4
A09p02180 Brassica napus HOM05D003798 ORTHO05D004652 9.6e-60 235.3 429 38.9
BcaB01g02007 Brassica carinata HOM05D003798 ORTHO05D004652 4.8e-59 233.0 422 38.4
Carub.0006s3435 Capsella rubella HOM05D003798 ORTHO05D004652 1.8e-58 231.1 421 39.0
AT4G02740 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 5.3e-58 229.6 403 38.7
C03p37610 Brassica napus HOM05D003798 ORTHO05D004652 5.3e-58 229.6 428 38.6
C03p37600 Brassica napus HOM05D003798 ORTHO05D004652 6.9e-58 229.2 423 38.1
Sp6g02720 Schrenkiella parvula HOM05D003798 ORTHO05D004652 6.9e-58 229.2 396 38.4
AL6G50180 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 1.2e-57 228.4 472 37.3
CARHR251100 Cardamine hirsuta HOM05D003798 ORTHO05D004652 3.4e-57 226.9 416 38.9
DCAR_012485 Daucus carota HOM05D003798 ORTHO05D004652 4.5e-57 226.5 457 37.0
Sp6g02730 Schrenkiella parvula HOM05D003798 ORTHO05D004652 4.9e-56 223.0 398 37.9
Carub.0006s3431 Capsella rubella HOM05D003798 ORTHO05D004652 2.4e-55 220.7 422 38.9
Sp6g02760 Schrenkiella parvula HOM05D003798 ORTHO05D004652 7.1e-55 219.2 417 37.9
Thhalv10029278m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 9.3e-55 218.8 417 37.9
BolC3t16054H Brassica oleracea HOM05D003798 ORTHO05D004652 1.2e-54 218.4 415 37.3
BraA03t12264Z Brassica rapa HOM05D003798 ORTHO05D004652 4.6e-54 216.5 422 36.5
C03p37640 Brassica napus HOM05D003798 ORTHO05D004652 6.0e-54 216.1 414 37.7
BraA09t35866Z Brassica rapa HOM05D003798 ORTHO05D004652 1.8e-53 214.5 430 37.9
BcaC01g06735 Brassica carinata HOM05D003798 ORTHO05D004652 6.7e-53 212.6 412 36.9
A09p02170 Brassica napus HOM05D003798 ORTHO05D004652 1.1e-52 211.8 410 36.8
CARHR251130 Cardamine hirsuta HOM05D003798 ORTHO05D004652 2.5e-52 210.7 356 40.2
C03p37620 Brassica napus HOM05D003798 ORTHO05D004652 3.3e-52 210.3 477 34.6
Aa31LG5G2380 Aethionema arabicum HOM05D003798 ORTHO05D004652 9.6e-52 208.8 433 35.1
BraA09t35865Z Brassica rapa HOM05D003798 ORTHO05D004652 2.8e-51 207.2 409 36.7
A03p30870 Brassica napus HOM05D003798 ORTHO05D004652 8.2e-51 205.7 401 35.9
Carub.0006s3432 Capsella rubella HOM05D003798 ORTHO05D004652 2.2e-48 197.6 393 35.9
Lsat_1_v5_gn_9_3521 Lactuca sativa HOM05D003798 ORTHO05D004652 3.5e-46 190.3 380 35.5
Carub.0006s3436 Capsella rubella HOM05D003798 ORTHO05D004652 3.0e-45 187.2 378 38.1
Lsat_1_v5_gn_4_62701 Lactuca sativa HOM05D003798 ORTHO05D004652 2.5e-44 184.1 150 61.3
Lsat_1_v5_gn_8_57021 Lactuca sativa HOM05D003798 ORTHO05D004652 4.3e-44 183.3 384 33.9
BolC3t16051H Brassica oleracea HOM05D003798 ORTHO05D004652 5.7e-44 183.0 366 35.8
AL6G50250 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 2.6e-41 174.1 365 36.4
AT4G02735 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 3.8e-40 170.2 372 34.1
CBR_g46206 Chara braunii HOM05D003798 ORTHO05D004652 3.8e-40 170.2 379 31.4
Thhalv10029415m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 1.6e-38 164.9 389 34.2
Nitab4.5_0024519g0010 Nicotiana tabacum HOM05D003798 ORTHO05D004652 1.0e-37 162.2 216 44.9
Pp3c6_19750 Physcomitrium patens HOM05D003798 ORTHO05D004652 6.7e-37 159.5 372 32.8
Lsat_1_v5_gn_4_100581 Lactuca sativa HOM05D003798 ORTHO05D004652 5.9e-33 146.4 108 64.8
VMungo1383G1292 Vigna mungo HOM05D003798 ORTHO05D004652 2.5e-31 141.0 92 73.9
BcaB07g33030 Brassica carinata HOM05D003798 ORTHO05D004652 3.0e-29 134.0 179 44.1
AT4G02733 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 4.4e-28 130.2 162 43.8
C06p11970 Brassica napus HOM05D003798 ORTHO05D004652 1.4e-26 125.2 187 42.8
Sp6g02700 Schrenkiella parvula HOM05D003798 ORTHO05D004652 2.0e-25 121.3 142 47.9
BraA03t12263Z Brassica rapa HOM05D000596 ORTHO05D002115 1.3e-24 118.6 188 38.3
A03p30850 Brassica napus HOM05D000596 ORTHO05D002115 2.2e-24 117.9 188 37.8
Actinidia00759 Actinidia chinensis HOM05D003798 ORTHO05D004652 2.9e-24 117.5 109 58.7
SEGI_05001 Sequoiadendron giganteum HOM05D003798 ORTHO05D004652 7.2e-23 112.8 185 36.2
AT4G08535 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 4.7e-22 110.2 260 33.8
Aa31LG8G1370 Aethionema arabicum HOM05D003798 ORTHO05D004652 8.8e-21 105.9 333 30.3
CARHR251080 Cardamine hirsuta HOM05D003798 ORTHO05D004652 1.5e-20 105.1 172 40.7
Rhsim02G0147100 Rhododendron simsii HOM05D003798 ORTHO05D004652 8.2e-19 99.4 80 63.8
Thhalv10029301m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 4.1e-18 97.1 151 39.1
Actinidia00770 Actinidia chinensis HOM05D003798 ORTHO05D004652 1.2e-17 95.5 61 73.8
HanXRQChr10g0281951 Helianthus annuus HOM05D003798 ORTHO05D006066 7.7e-17 92.8 64 64.1
AL1084U10010 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 2.9e-16 90.9 115 40.9
BcaC04g21277 Brassica carinata HOM05D040525 ORTHO05D023659 6.5e-16 89.7 312 28.8
Lj2A1170T18 Lonicera japonica HOM05D003798 ORTHO05D004652 6.5e-16 89.7 143 44.1
VMungo1080G0763 Vigna mungo HOM05D003798 ORTHO05D004652 1.9e-15 88.2 60 70.0
BolC6t36333H Brassica oleracea HOM05D003798 ORTHO05D004652 5.5e-15 86.7 135 44.4
Lsat_1_v5_gn_7_8121 Lactuca sativa HOM05D003798 ORTHO05D004652 2.1e-14 84.7 83 53.0
Aqoxy1G03386 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 2.3e-13 81.3 80 50.0
Actinidia24901 Actinidia chinensis HOM05D003798 ORTHO05D004652 3.0e-13 80.9 240 30.0
Lsat_1_v5_gn_4_80681 Lactuca sativa HOM05D003798 ORTHO05D004652 4.0e-13 80.5 59 64.4
BcaC01g06733 Brassica carinata HOM05D003798 ORTHO05D032066 5.2e-13 80.1 104 43.3
Ca_10811_v3 Cicer arietinum L. HOM05D003798 ORTHO05D004652 5.2e-13 80.1 76 55.3
Sp6g02770 Schrenkiella parvula HOM05D009848 ORTHO05D011321 1.5e-12 78.6 106 41.5
Glyma.06G258700 Glycine max HOM05D003798 ORTHO05D004652 3.3e-12 77.4 73 57.5
Hma1.2p1_1168F.1_g263140 Hydrangea macrophylla HOM05D003798 ORTHO05D004652 7.5e-12 76.3 56 67.9
BolC3t16050H Brassica oleracea HOM05D003798 ORTHO05D032066 1.7e-11 75.1 167 33.5
arahy.Tifrunner.gnm1.ann1.FYU6J1 Arachis hypogaea HOM05D000331 ORTHO05D021523 8.2e-11 72.8 61 55.7
Actinidia24900 Actinidia chinensis HOM05D003798 ORTHO05D004652 3.1e-10 70.9 83 47.0
Aa31sc472G30 Aethionema arabicum HOM05D003798 ORTHO05D004652 7.0e-10 69.7 210 31.0
arahy.Tifrunner.gnm1.ann1.E8A0WP Arachis hypogaea HOM05D003798 ORTHO05D021523 9.1e-10 69.3 60 51.7
Lsat_1_v5_gn_1_5801 Lactuca sativa HOM05D003798 ORTHO05D004652 1.2e-09 68.9 86 47.7
BolC9t53154H Brassica oleracea HOM05D003798 ORTHO05D004652 1.6e-09 68.6 125 36.0
Actinidia00760 Actinidia chinensis HOM05D003798 ORTHO05D004652 2.7e-09 67.8 57 59.6
BcaB05g23891 Brassica carinata HOM05D003798 ORTHO05D004652 4.5e-09 67.0 124 36.3
BolC6t36334H Brassica oleracea HOM05D003798 ORTHO05D004652 5.9e-09 66.6 203 32.5
C03p37590 Brassica napus HOM05D003798 ORTHO05D032066 1.1e-07 62.4 159 32.7


User provided reference genes

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