Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0016194 Sechium edule HOM05D006349 ORTHO05D008205 1.8e-84 316.2 200 100.0
ClCG01G014390 Citrullus lanatus HOM05D006349 ORTHO05D008205 6.7e-60 234.6 199 79.9
CsaV3_1G007920 Cucumis sativus L. HOM05D006349 ORTHO05D008205 1.2e-59 233.8 199 79.9
MELO3C002208.2 Cucumis melo HOM05D006349 ORTHO05D008205 8.2e-58 227.6 198 78.8
Gohir.D13G009000 Gossypium hirsutum HOM05D006349 ORTHO05D008205 2.7e-48 196.1 191 68.6
Gorai.013G009800 Gossypium raimondii HOM05D006349 ORTHO05D008205 2.7e-48 196.1 191 68.6
PGR083G1017 Punica granatum HOM05D006349 ORTHO05D008205 3.5e-48 195.7 207 66.2
Gohir.A13G008300 Gossypium hirsutum HOM05D006349 ORTHO05D008205 1.7e-47 193.4 185 69.2
Psat7g112120 Pisum sativum HOM05D006349 ORTHO05D008205 5.0e-47 191.8 200 67.0
MD06G1188100 Malus domestica HOM05D006349 ORTHO05D008205 6.5e-47 191.4 203 67.5
Phvul.009G190100 Phaseolus vulgaris HOM05D006349 ORTHO05D008205 1.5e-46 190.3 202 67.3
Duzib068G1139 Durio zibethinus HOM05D006349 ORTHO05D008205 2.5e-46 189.5 160 78.1
Manes.06G096400 Manihot esculenta HOM05D006349 ORTHO05D008205 2.5e-46 189.5 159 78.6
arahy.Tifrunner.gnm1.ann1.FR12T1 Arachis hypogaea HOM05D006349 ORTHO05D008205 3.3e-46 189.1 202 65.8
Eucgr.B00425 Eucalyptus grandis HOM05D006349 ORTHO05D008205 3.3e-46 189.1 201 68.2
Sabra15G0090500 Salix brachista HOM05D006349 ORTHO05D008205 4.2e-46 188.7 167 74.9
Potri.015G065100 Populus trichocarpa HOM05D006349 ORTHO05D008205 5.5e-46 188.3 167 75.4
CANSAT80G2583 Cannabis sativa HOM05D006349 ORTHO05D008205 1.2e-45 187.2 157 78.3
arahy.Tifrunner.gnm1.ann1.GD5F3R Arachis hypogaea HOM05D006349 ORTHO05D008205 2.8e-45 186.0 204 65.7
Glyma.06G190300 Glycine max HOM05D006349 ORTHO05D008205 3.6e-45 185.7 200 64.0
Nitab4.5_0000785g0220 Nicotiana tabacum HOM05D006349 ORTHO05D008205 6.1e-45 184.9 164 76.8
CiPaw.11G038000 Carya illinoinensis HOM05D006349 ORTHO05D008205 8.0e-45 184.5 178 71.9
Glyma.04G174400 Glycine max HOM05D006349 ORTHO05D008205 8.0e-45 184.5 201 64.7
COL.COLO4_05705 Corchorus olitorius HOM05D006349 ORTHO05D008205 1.4e-44 183.7 192 68.2
TPR.G11993 Trifolium pratense HOM05D006349 ORTHO05D008205 1.4e-44 183.7 175 70.3
Hma1.2p1_0104F.1_g050210 Hydrangea macrophylla HOM05D006349 ORTHO05D008205 1.8e-44 183.3 198 65.2
Nitab4.5_0004605g0070 Nicotiana tabacum HOM05D006349 ORTHO05D008205 1.8e-44 183.3 164 76.2
GSVIVG01008063001 Vitis vinifera HOM05D006349 ORTHO05D008205 1.8e-44 183.3 160 76.2
QL10p015567 Quercus lobata HOM05D006349 ORTHO05D008205 2.3e-44 183.0 202 64.9
Ca_25734_v3 Cicer arietinum L. HOM05D006349 ORTHO05D008205 3.0e-44 182.6 201 66.2
Nn4g23038 Nelumbo nucifera HOM05D006349 ORTHO05D008205 3.0e-44 182.6 168 74.4
Atru.chr9.2318 Acer truncatum HOM05D006349 ORTHO05D008205 4.0e-44 182.2 200 65.0
Actinidia37657 Actinidia chinensis HOM05D006349 ORTHO05D008205 5.2e-44 181.8 151 79.5
Potri.012G070600 Populus trichocarpa HOM05D006349 ORTHO05D008205 8.9e-44 181.0 167 71.9
Cpa.g.sc17.203 Carica papaya HOM05D006349 ORTHO05D008205 1.2e-43 180.6 202 64.4
Lalb_Chr08g0235931 Lupinus albus HOM05D006349 ORTHO05D008205 2.0e-43 179.9 200 63.0
MBI19_g30284_MAGBIO Magnolia biondii HOM05D006349 ORTHO05D008205 2.0e-43 179.9 183 69.9
Cfa018991 Carpinus fangiana HOM05D006349 ORTHO05D008205 3.4e-43 179.1 159 75.5
FAN04G0897 Fragaria x ananassa HOM05D006349 ORTHO05D008205 3.4e-43 179.1 175 72.6
Sp5g29850 Schrenkiella parvula HOM05D006349 ORTHO05D008205 4.4e-43 178.7 200 64.0
Sc12g0006210 Simmondsia chinensis HOM05D006349 ORTHO05D008205 4.4e-43 178.7 159 75.5
BcaC08g46899 Brassica carinata HOM05D006349 ORTHO05D008205 5.7e-43 178.3 200 63.0
C06p48760 Brassica napus HOM05D006349 ORTHO05D008205 5.7e-43 178.3 200 63.0
BraA07t31583Z Brassica rapa HOM05D006349 ORTHO05D008205 5.7e-43 178.3 200 63.0
FAN13G0390 Fragaria x ananassa HOM05D006349 ORTHO05D008205 5.7e-43 178.3 188 68.1
Lj1g0000266 Lotus japonicus HOM05D006349 ORTHO05D008205 9.8e-43 177.6 200 65.5
A07p40410 Brassica napus HOM05D006349 ORTHO05D008205 1.3e-42 177.2 200 63.0
BolC6t39912H Brassica oleracea HOM05D006349 ORTHO05D008205 1.7e-42 176.8 200 63.0
BraA02t06992Z Brassica rapa HOM05D006349 ORTHO05D008205 2.2e-42 176.4 200 63.5
BcaC03g15525 Brassica carinata HOM05D006349 ORTHO05D008205 3.7e-42 175.6 200 63.0
C02p32090 Brassica napus HOM05D006349 ORTHO05D008205 3.7e-42 175.6 200 63.0
AUR62021741 Chenopodium quinoa HOM05D006349 ORTHO05D008205 3.7e-42 175.6 175 69.7
Ciclev10022359m.g Citrus clementina HOM05D006349 ORTHO05D008205 3.7e-42 175.6 179 70.4
FvH4_5g15500 Fragaria vesca HOM05D006349 ORTHO05D008205 4.9e-42 175.3 175 70.9
FAN18G4547 Fragaria x ananassa HOM05D006349 ORTHO05D008205 4.9e-42 175.3 175 70.9
Medtr4g089080 Medicago truncatula HOM05D006349 ORTHO05D008205 4.9e-42 175.3 200 62.5
EL10Ac5g10944 Beta vulgaris HOM05D006349 ORTHO05D008205 6.3e-42 174.9 166 72.9
vmacro19434 Vaccinium macrocarpon HOM05D006349 ORTHO05D008205 1.1e-41 174.1 154 76.6
BolC2t09244H Brassica oleracea HOM05D006349 ORTHO05D008205 1.4e-41 173.7 200 62.0
Thecc.03G079100 Theobroma cacao HOM05D006349 ORTHO05D008205 1.8e-41 173.3 160 73.8
CARHR068050 Cardamine hirsuta HOM05D006349 ORTHO05D008205 2.4e-41 172.9 199 60.8
Cc04_g15550 Coffea canephora HOM05D006349 ORTHO05D008205 2.4e-41 172.9 207 63.3
HPP92_022919 Vanilla planifolia HOM05D006349 ORTHO05D008205 4.1e-41 172.2 166 70.5
HPP92_022931 Vanilla planifolia HOM05D006349 ORTHO05D008205 4.1e-41 172.2 166 70.5
AT1G74730 Arabidopsis thaliana HOM05D006349 ORTHO05D008205 7.0e-41 171.4 200 62.0
CSS0001294 Camellia sinensis var. sinensis HOM05D006349 ORTHO05D008205 7.0e-41 171.4 149 76.5
Carub.0002s2152 Capsella rubella HOM05D006349 ORTHO05D008205 7.0e-41 171.4 202 61.4
Dinv38665 Davidia involucrata HOM05D006349 ORTHO05D008205 7.0e-41 171.4 146 79.5
AL2G34620 Arabidopsis lyrata HOM05D006349 ORTHO05D008205 9.2e-41 171.0 198 61.1
PGSC0003DMG400025345 Solanum tuberosum HOM05D006349 ORTHO05D008205 9.2e-41 171.0 183 66.7
Zm00001eb160550 Zea mays HOM05D006349 ORTHO05D008205 9.2e-41 171.0 173 69.9
CAN.G999.48 Capsicum annuum HOM05D006349 ORTHO05D008205 2.0e-40 169.9 164 71.3
Peaxi162Scf00009g00321 Petunia axillaris HOM05D006349 ORTHO05D008205 2.0e-40 169.9 164 72.6
RcHm_v2.0_Chr7g0180591 Rosa chinensis HOM05D006349 ORTHO05D008205 2.7e-40 169.5 175 68.6
Solyc03g113240.3 Solanum lycopersicum HOM05D006349 ORTHO05D008205 2.7e-40 169.5 198 64.6
Sopen03g032300 Solanum pennellii HOM05D006349 ORTHO05D008205 2.7e-40 169.5 198 64.6
CDE07G1088 Ceratophyllum demersum HOM05D006349 ORTHO05D008205 3.5e-40 169.1 201 61.7
HanXRQChr09g0271121 Helianthus annuus HOM05D006349 ORTHO05D008205 4.5e-40 168.7 157 73.2
Hund02668 Selenicereus undatus HOM05D006349 ORTHO05D008205 4.5e-40 168.7 165 70.3
Ah.02g113210 Amaranthus hybridus HOM05D006349 ORTHO05D008205 1.0e-39 167.5 148 77.0
BcaB05g24870 Brassica carinata HOM05D003553 ORTHO05D005072 1.3e-39 167.2 200 61.5
ECA232G0565 Erigeron canadensis HOM05D006349 ORTHO05D008205 1.3e-39 167.2 157 73.2
Oeu006473.1 Olea europaea HOM05D006349 ORTHO05D008205 2.9e-39 166.0 154 72.7
Os01g0585300 Oryza sativa ssp. japonica HOM05D006349 ORTHO05D008205 3.8e-39 165.6 157 74.5
TWI81G0140 Tripterygium wilfordii HOM05D006349 ORTHO05D008205 5.0e-39 165.2 173 67.6
AUR62008355 Chenopodium quinoa HOM05D006349 ORTHO05D008205 6.6e-39 164.9 148 75.0
DCAR_015995 Daucus carota HOM05D006349 ORTHO05D008205 8.6e-39 164.5 155 72.3
ATR1120G128 Amborella trichopoda HOM05D006349 ORTHO05D008205 4.3e-38 162.2 200 61.0
Prupe.5G186300 Prunus persica HOM05D006349 ORTHO05D008205 1.6e-37 160.2 190 62.1
Lj9P459T48 Lonicera japonica HOM05D006349 ORTHO05D008205 2.1e-37 159.8 149 74.5
MD14G1194200 Malus domestica HOM05D006349 ORTHO05D008205 2.1e-37 159.8 202 62.4
TAR622G0703 Trochodendron aralioides HOM05D006349 ORTHO05D008205 2.1e-37 159.8 174 67.2
Aqoxy3G03265 Aquilegia oxysepala HOM05D006349 ORTHO05D008205 2.8e-37 159.5 200 59.5
Migut.D01854 Erythranthe guttata HOM05D006349 ORTHO05D008205 1.4e-36 157.1 155 69.7
SalBow7G1566 Salvia bowleyana HOM05D006349 ORTHO05D008205 1.4e-36 157.1 155 70.3
Lsat_1_v5_gn_4_107320 Lactuca sativa HOM05D006349 ORTHO05D008205 1.8e-36 156.8 152 69.7
PSO781G0309 Papaver somniferum HOM05D006349 ORTHO05D008205 2.3e-36 156.4 193 59.6
SGA_v2.0_scaffold7G04081 Striga asiatica HOM05D006349 ORTHO05D008205 5.2e-36 155.2 155 69.7
Thhalv10019168m.g Eutrema salsugineum HOM05D006349 ORTHO05D008205 1.5e-35 153.7 200 57.5
CDE04G3639 Ceratophyllum demersum HOM05D006349 ORTHO05D008205 1.3e-34 150.6 187 61.0
BcaC08g46920 Brassica carinata HOM05D006349 ORTHO05D008205 2.2e-34 149.8 134 73.9
unitig_46.g18468 Utricularia gibba HOM05D006349 ORTHO05D008205 1.8e-33 146.7 201 55.2
MSTRG.4410 Avicennia marina HOM05D006349 ORTHO05D008205 4.1e-33 145.6 200 58.0
Haze_07380 Corylus avellana HOM05D006349 ORTHO05D008205 3.3e-30 136.0 159 64.2
Aa31LG4G4960 Aethionema arabicum HOM05D006349 ORTHO05D008205 7.3e-30 134.8 202 51.5
PSO541G4605 Papaver somniferum HOM05D006349 ORTHO05D008205 1.8e-28 130.2 200 52.5
FAN08G2244 Fragaria x ananassa HOM05D006349 ORTHO05D008205 2.9e-26 122.9 188 54.8
Pp3c20_23180 Physcomitrium patens HOM05D006349 ORTHO05D008205 2.0e-24 116.7 154 57.1
Mapoly0105s0011 Marchantia polymorpha HOM05D006349 ORTHO05D008205 1.6e-21 107.1 163 52.8
SEGI_24937 Sequoiadendron giganteum HOM05D006349 ORTHO05D008205 2.8e-21 106.3 159 55.3
Actinidia04919 Actinidia chinensis HOM05D006349 ORTHO05D008205 3.6e-21 105.9 106 55.7
AagrBONN_evm.TU.Sc2ySwM_362.857 Anthoceros agrestis HOM05D006349 ORTHO05D008205 8.1e-21 104.8 167 53.9
SMO340G0151 Selaginella moellendorffii HOM05D006349 ORTHO05D008205 2.6e-19 99.8 150 53.3
Pp3c25_12400 Physcomitrium patens HOM05D006349 ORTHO05D008205 1.4e-17 94.0 114 63.2
SGA_v2.0_scaffold294G47475 Striga asiatica HOM05D006349 ORTHO05D008205 3.2e-17 92.8 127 50.4
BcaC03g15526 Brassica carinata HOM05D006349 ORTHO05D008205 5.4e-17 92.0 110 59.1
CARHR103880 Cardamine hirsuta HOM05D006349 ORTHO05D008205 3.9e-15 85.9 140 52.9
A02p19550 Brassica napus HOM05D006349 ORTHO05D008205 5.1e-15 85.5 97 47.4
CBR_g48703 Chara braunii HOM05D006349 ORTHO05D008205 4.3e-14 82.4 156 47.4
Pp3c24_420 Physcomitrium patens HOM05D006349 ORTHO05D008205 2.4e-09 66.6 51 58.8
Nn8g40820 Nelumbo nucifera HOM05D006349 ORTHO05D008205 7.1e-09 65.1 125 46.4


User provided reference genes

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