Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0016160 Sechium edule HOM05D003663 ORTHO05D005327 7.6e-98 360.5 187 100.0
ClCG02G002710 Citrullus lanatus HOM05D003663 ORTHO05D005327 1.7e-76 289.7 198 77.3
Sed0003500 Sechium edule HOM05D003663 ORTHO05D005327 6.3e-68 261.2 198 73.2
MELO3C028604.2 Cucumis melo HOM05D003663 ORTHO05D005327 2.0e-66 256.1 198 70.2
CsaV3_7G023690 Cucumis sativus L. HOM05D003663 ORTHO05D005327 7.7e-66 254.2 167 78.4
MELO3C024107.2 Cucumis melo HOM05D003663 ORTHO05D005327 1.0e-65 253.8 199 69.8
CsaV3_7G002660 Cucumis sativus L. HOM05D003663 ORTHO05D005327 3.4e-45 185.7 198 56.6
Glyma.14G007200 Glycine max HOM05D003663 ORTHO05D005327 9.5e-40 167.5 159 56.6
Hma1.2p1_1267F.1_g271530 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 8.0e-39 164.5 167 52.1
Phvul.008G285700 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 2.3e-38 162.9 166 56.0
Hma1.2p1_2614F.1_g325410 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 6.8e-38 161.4 167 51.5
LjContig00081g0009748 Lotus japonicus HOM05D003663 ORTHO05D005327 6.8e-38 161.4 192 50.5
arahy.Tifrunner.gnm1.ann1.8QBK2E Arachis hypogaea HOM05D003663 ORTHO05D005327 1.2e-37 160.6 159 54.7
arahy.Tifrunner.gnm1.ann1.P7DY53 Arachis hypogaea HOM05D003663 ORTHO05D005327 1.2e-37 160.6 159 54.7
Ca_06459_v3 Cicer arietinum L. HOM05D003663 ORTHO05D005327 2.0e-37 159.8 194 48.5
VMungo0647G1338 Vigna mungo HOM05D003663 ORTHO05D005327 5.7e-37 158.3 167 53.9
Lalb_Chr17g0349111 Lupinus albus HOM05D003663 ORTHO05D005327 1.3e-36 157.1 125 63.2
TAR627G0054 Trochodendron aralioides HOM05D003663 ORTHO05D005327 1.7e-36 156.8 201 44.3
TPR.G1287 Trifolium pratense HOM05D003663 ORTHO05D005327 6.4e-36 154.8 159 52.2
Psat2g004440 Pisum sativum HOM05D003663 ORTHO05D005327 8.3e-36 154.5 160 52.5
TWI36G0551 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 5.4e-35 151.8 127 59.1
Medtr5g097370 Medicago truncatula HOM05D003663 ORTHO05D005327 5.9e-34 148.3 161 49.7
MD09G1122000 Malus domestica HOM05D003663 ORTHO05D005327 7.3e-32 141.4 159 50.9
Prupe.4G006800 Prunus persica HOM05D003663 ORTHO05D005327 1.2e-29 134.0 131 51.1
PGR142G2458 Punica granatum HOM05D003663 ORTHO05D005327 1.7e-28 130.2 132 53.0
Aqoxy3G02718 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 3.7e-28 129.0 127 48.8
THA.LOC104826655 Tarenaya hassleriana HOM05D003663 ORTHO05D005327 3.7e-28 129.0 173 43.4
AL6G38450 Arabidopsis lyrata HOM05D003663 ORTHO05D005327 4.9e-28 128.6 161 42.2
AT5G26730 Arabidopsis thaliana HOM05D003663 ORTHO05D005327 1.4e-27 127.1 138 46.4
Ciclev10017620m.g Citrus clementina HOM05D003663 ORTHO05D005327 1.9e-27 126.7 143 46.9
BcaC04g23626 Brassica carinata HOM05D003663 ORTHO05D005327 2.4e-27 126.3 134 47.8
BolC9t53556H Brassica oleracea HOM05D003663 ORTHO05D005327 2.4e-27 126.3 134 47.8
BcaB04g19727 Brassica carinata HOM05D003663 ORTHO05D005327 9.2e-27 124.4 128 48.4
A09p05770 Brassica napus HOM05D003663 ORTHO05D005327 9.2e-27 124.4 128 48.4
C09p06370 Brassica napus HOM05D003663 ORTHO05D005327 9.2e-27 124.4 134 47.0
BraA09t36218Z Brassica rapa HOM05D003663 ORTHO05D005327 9.2e-27 124.4 128 48.4
TPR.G10569 Trifolium pratense HOM05D003663 ORTHO05D005327 9.2e-27 124.4 124 51.6
Aqoxy1G04229 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 1.2e-26 124.0 121 50.4
CARHR186960 Cardamine hirsuta HOM05D003663 ORTHO05D005327 1.6e-26 123.6 138 44.9
Thhalv10005288m.g Eutrema salsugineum HOM05D003663 ORTHO05D005327 1.6e-26 123.6 135 45.9
Lj6g0026147 Lotus japonicus HOM05D003663 ORTHO05D005327 4.6e-26 122.1 124 49.2
Nn1g03229 Nelumbo nucifera HOM05D003663 ORTHO05D005327 4.6e-26 122.1 124 50.8
Carub.0006s2423 Capsella rubella HOM05D003663 ORTHO05D005327 1.0e-25 120.9 135 46.7
arahy.Tifrunner.gnm1.ann1.5NF29Y Arachis hypogaea HOM05D003663 ORTHO05D005327 1.7e-25 120.2 124 51.6
arahy.Tifrunner.gnm1.ann1.CR9YGF Arachis hypogaea HOM05D003663 ORTHO05D005327 1.7e-25 120.2 124 51.6
Glyma.09G012100 Glycine max HOM05D003663 ORTHO05D005327 2.3e-25 119.8 125 48.8
Ca_00744_v3 Cicer arietinum L. HOM05D003663 ORTHO05D005327 8.6e-25 117.9 124 50.0
Lalb_Chr20g0119391 Lupinus albus HOM05D003663 ORTHO05D005327 8.6e-25 117.9 126 47.6
Aqoxy1G04227 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 1.9e-24 116.7 126 51.6
BcaNung03959 Brassica carinata HOM05D003663 ORTHO05D005327 1.9e-24 116.7 141 44.0
FvH4_3g00560 Fragaria vesca HOM05D003663 ORTHO05D005327 4.3e-24 115.5 127 44.1
BcaNung02825 Brassica carinata HOM05D003663 ORTHO05D005327 9.5e-24 114.4 141 44.0
A06p36830 Brassica napus HOM05D003663 ORTHO05D005327 9.5e-24 114.4 153 43.1
C07p41660 Brassica napus HOM05D003663 ORTHO05D005327 9.5e-24 114.4 141 44.0
BolC7t44701H Brassica oleracea HOM05D003663 ORTHO05D005327 9.5e-24 114.4 141 44.0
BraA06t26609Z Brassica rapa HOM05D003663 ORTHO05D005327 9.5e-24 114.4 153 43.1
Sed0020467 Sechium edule HOM05D003663 ORTHO05D005327 1.6e-23 113.6 129 48.1
Phvul.006G141400 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 2.1e-23 113.2 125 48.0
FAN25G1738 Fragaria x ananassa HOM05D003663 ORTHO05D005327 4.7e-23 112.1 127 44.1
Eucgr.L03441 Eucalyptus grandis HOM05D003663 ORTHO05D005327 6.2e-23 111.7 118 50.0
RcHm_v2.0_Chr2g0156681 Rosa chinensis HOM05D003663 ORTHO05D005327 8.1e-23 111.3 94 54.3
ATR0624G116 Amborella trichopoda HOM05D003663 ORTHO05D005327 1.1e-22 110.9 132 42.4
ClCG01G010650 Citrullus lanatus HOM05D003663 ORTHO05D005327 1.8e-22 110.2 131 47.3
Psat1g178200 Pisum sativum HOM05D003663 ORTHO05D005327 1.8e-22 110.2 124 46.0
Prupe.3G201600 Prunus persica HOM05D003663 ORTHO05D005327 2.3e-22 109.8 126 50.8
TWI38G0283 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 5.2e-22 108.6 137 40.1
Aqoxy1G04228 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 1.5e-21 107.1 133 44.4
Sed0002316 Sechium edule HOM05D003663 ORTHO05D005327 2.0e-21 106.7 129 48.1
VMungo0540G0424 Vigna mungo HOM05D003663 ORTHO05D005327 3.4e-21 105.9 156 39.1
PSO210G1796 Papaver somniferum HOM05D003663 ORTHO05D005327 2.9e-20 102.8 124 42.7
PSO302G0013 Papaver somniferum HOM05D003663 ORTHO05D005327 2.9e-20 102.8 124 42.7
CAN.G65.131 Capsicum annuum HOM05D003663 ORTHO05D005327 3.7e-20 102.4 139 43.9
Glyma.02G305800 Glycine max HOM05D003663 ORTHO05D005327 4.9e-20 102.1 109 54.1
Sp2g21370 Schrenkiella parvula HOM05D003663 ORTHO05D005327 1.1e-19 100.9 112 45.5
Peaxi162Scf00815g00311 Petunia axillaris HOM05D003663 ORTHO05D005327 9.2e-19 97.8 133 43.6
Oeu060390.1 Olea europaea HOM05D002083 ORTHO05D000332 1.2e-18 97.4 122 45.1
Sopen06g029160 Solanum pennellii HOM05D003663 ORTHO05D005327 2.1e-18 96.7 127 41.7
Potri.006G016700 Populus trichocarpa HOM05D003663 ORTHO05D005327 3.5e-18 95.9 106 44.3
Nitab4.5_0000021g0580 Nicotiana tabacum HOM05D003663 ORTHO05D005327 7.8e-18 94.7 137 40.9
COL.COLO4_06064 Corchorus olitorius HOM05D003663 ORTHO05D005327 1.7e-17 93.6 137 42.3
Oeu027885.1 Olea europaea HOM05D003663 ORTHO05D005327 2.3e-17 93.2 122 43.4
BcaB07g29963 Brassica carinata HOM05D003663 ORTHO05D005327 3.0e-17 92.8 92 46.7
Nitab4.5_0001762g0070 Nicotiana tabacum HOM05D003663 ORTHO05D005327 3.0e-17 92.8 128 42.2
PGSC0003DMG400027034 Solanum tuberosum HOM05D003663 ORTHO05D005327 3.9e-17 92.4 127 40.9
TPR.G17125 Trifolium pratense HOM05D003663 ORTHO05D005327 3.9e-17 92.4 137 38.7
A02p03870 Brassica napus HOM05D003663 ORTHO05D005327 5.1e-17 92.0 119 42.9
THA.LOC104827213 Tarenaya hassleriana HOM05D003663 ORTHO05D005327 6.6e-17 91.7 118 42.4
Duzib177G0557 Durio zibethinus HOM05D003663 ORTHO05D005327 1.1e-16 90.9 133 42.1
Manes.09G126900 Manihot esculenta HOM05D003663 ORTHO05D005327 1.1e-16 90.9 136 42.6
Cfa016035 Carpinus fangiana HOM05D003663 ORTHO05D005327 1.5e-16 90.5 142 38.7
Sc13g0010870 Simmondsia chinensis HOM05D003663 ORTHO05D005327 1.5e-16 90.5 139 41.7
Aqoxy3G02161 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 1.9e-16 90.1 135 40.7
BraA02t05351Z Brassica rapa HOM05D003663 ORTHO05D005327 1.9e-16 90.1 119 42.0
Migut.F00942 Erythranthe guttata HOM05D003663 ORTHO05D005327 1.9e-16 90.1 129 43.4
HanXRQChr14g0462981 Helianthus annuus HOM05D003663 ORTHO05D005327 1.9e-16 90.1 125 36.8
Medtr4g099150 Medicago truncatula HOM05D003663 ORTHO05D005327 2.5e-16 89.7 135 38.5
Sp6g27190 Schrenkiella parvula HOM05D003663 ORTHO05D005327 2.5e-16 89.7 127 39.4
BolC2t06783H Brassica oleracea HOM05D003663 ORTHO05D005327 4.3e-16 89.0 119 40.3
BcaC03g18525 Brassica carinata HOM05D003663 ORTHO05D005327 5.6e-16 88.6 119 40.3
C02p08670 Brassica napus HOM05D003663 ORTHO05D005327 5.6e-16 88.6 119 40.3
CSS0037566 Camellia sinensis var. sinensis HOM05D003663 ORTHO05D005327 5.6e-16 88.6 129 41.9
Sabra19G0059300 Salix brachista HOM05D003663 ORTHO05D005327 7.3e-16 88.2 125 42.4
BcaNung00434 Brassica carinata HOM05D003663 ORTHO05D005327 9.5e-16 87.8 119 40.3
Ciclev10021912m.g Citrus clementina HOM05D003663 ORTHO05D005327 9.5e-16 87.8 125 42.4
Duzib106G1874 Durio zibethinus HOM05D003663 ORTHO05D005327 9.5e-16 87.8 120 44.2
Lj3P887T57 Lonicera japonica HOM05D003663 ORTHO05D005327 9.5e-16 87.8 122 42.6
MBI04_g20973_MAGBIO Magnolia biondii HOM05D003663 ORTHO05D005327 1.2e-15 87.4 119 42.9
TWI34G0428 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 1.2e-15 87.4 146 37.7
ATR0829G139 Amborella trichopoda HOM05D003663 ORTHO05D005327 1.6e-15 87.0 126 38.9
Cpa.g.sc504.5 Carica papaya HOM05D003663 ORTHO05D005327 1.6e-15 87.0 134 41.0
Hma1.2p1_1680F.1_g297170 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 1.6e-15 87.0 138 38.4
Lj4g0026545 Lotus japonicus HOM05D003663 ORTHO05D005327 1.6e-15 87.0 159 37.1
Glyma.17G149700 Glycine max HOM05D003663 ORTHO05D005327 2.8e-15 86.3 129 38.0
Lalb_Chr05g0220821 Lupinus albus HOM05D003663 ORTHO05D005327 2.8e-15 86.3 157 35.7
VMungo0251G1526 Vigna mungo HOM05D003663 ORTHO05D005327 2.8e-15 86.3 137 37.2
Thhalv10014405m.g Eutrema salsugineum HOM05D003663 ORTHO05D005327 3.6e-15 85.9 119 41.2
Lsat_1_v5_gn_2_136720 Lactuca sativa HOM05D003663 ORTHO05D005327 3.6e-15 85.9 131 37.4
Psat4g076520 Pisum sativum HOM05D003663 ORTHO05D005327 3.6e-15 85.9 124 38.7
QL09p023778 Quercus lobata HOM05D003663 ORTHO05D005327 3.6e-15 85.9 123 39.0
ECA233G1163 Erigeron canadensis HOM05D003663 ORTHO05D005327 4.7e-15 85.5 125 36.8
Potri.019G049600 Populus trichocarpa HOM05D003663 ORTHO05D005327 4.7e-15 85.5 131 40.5
EL10Ac3g05074 Beta vulgaris HOM05D003663 ORTHO05D005327 6.2e-15 85.1 133 38.3
CANSAT21G0248 Cannabis sativa HOM05D003663 ORTHO05D005327 6.2e-15 85.1 129 40.3
BcaB04g19726 Brassica carinata HOM05D003663 ORTHO05D005327 1.1e-14 84.3 83 47.0
DCAR_010543 Daucus carota HOM05D003663 ORTHO05D005327 1.1e-14 84.3 164 34.1
Gohir.D11G318900 Gossypium hirsutum HOM05D003663 ORTHO05D005327 1.1e-14 84.3 120 40.8
Gorai.007G348900 Gossypium raimondii HOM05D003663 ORTHO05D005327 1.1e-14 84.3 120 40.8
Haze_00422 Corylus avellana HOM05D003663 ORTHO05D005327 1.4e-14 84.0 123 39.8
Nn3g19378 Nelumbo nucifera HOM05D003663 ORTHO05D005327 1.4e-14 84.0 133 39.1
Phvul.003G226500 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 1.8e-14 83.6 125 38.4
CiPaw.06G032900 Carya illinoinensis HOM05D003663 ORTHO05D005327 2.3e-14 83.2 141 36.9
PGR142G2930 Punica granatum HOM05D003663 ORTHO05D005327 2.3e-14 83.2 118 39.0
Rhsim09G0213000 Rhododendron simsii HOM05D003663 ORTHO05D005327 2.3e-14 83.2 126 39.7
CARHR196240 Cardamine hirsuta HOM05D003663 ORTHO05D005327 3.1e-14 82.8 119 39.5
Gohir.A11G303600 Gossypium hirsutum HOM05D003663 ORTHO05D005327 3.1e-14 82.8 120 40.0
AL6G27920 Arabidopsis lyrata HOM05D003663 ORTHO05D005327 4.0e-14 82.4 128 37.5
SalBow2G0094 Salvia bowleyana HOM05D003663 ORTHO05D005327 4.0e-14 82.4 130 40.8
AUR62002065 Chenopodium quinoa HOM05D003663 ORTHO05D005327 5.2e-14 82.0 119 39.5
PSO782G5365 Papaver somniferum HOM05D003663 ORTHO05D005327 5.2e-14 82.0 126 41.3
TAR374G1477 Trochodendron aralioides HOM05D003663 ORTHO05D005327 5.2e-14 82.0 135 39.3
AT5G16920 Arabidopsis thaliana HOM05D003663 ORTHO05D005327 8.9e-14 81.3 128 37.5
A02p39370 Brassica napus HOM05D003663 ORTHO05D010021 1.2e-13 80.9 95 42.1
Eucgr.K00086 Eucalyptus grandis HOM05D003663 ORTHO05D005327 1.2e-13 80.9 119 42.9
Medtr2g026520 Medicago truncatula HOM05D003663 ORTHO05D005327 1.2e-13 80.9 84 45.2
Cc00_g28240 Coffea canephora HOM05D003663 ORTHO05D005327 2.0e-13 80.1 135 39.3
PSO063G6858 Papaver somniferum HOM05D003663 ORTHO05D005327 2.0e-13 80.1 126 40.5
Rhsim03G0221600 Rhododendron simsii HOM05D003663 ORTHO05D005327 2.0e-13 80.1 126 37.3
SGA_v2.0_scaffold50G18444 Striga asiatica HOM05D003663 ORTHO05D005327 2.0e-13 80.1 144 34.7
Carub.0006s1513 Capsella rubella HOM05D003663 ORTHO05D005327 2.6e-13 79.7 119 37.8
Duzib128G0448 Durio zibethinus HOM05D003663 ORTHO05D005327 1.3e-12 77.4 135 37.0
vmacro22176 Vaccinium macrocarpon HOM05D003663 ORTHO05D005327 1.3e-12 77.4 126 36.5
Ah.13g072750 Amaranthus hybridus HOM05D003663 ORTHO05D005327 4.9e-12 75.5 134 36.6
Prupe.2G326500 Prunus persica HOM05D003663 ORTHO05D005327 2.4e-11 73.2 135 35.6
Os12g0233900 Oryza sativa ssp. japonica HOM05D003663 ORTHO05D005327 7.1e-11 71.6 122 33.6
Actinidia33794 Actinidia chinensis HOM05D003663 ORTHO05D005327 9.6e-08 61.2 88 37.5
Nn1g01862 Nelumbo nucifera HOM05D003663 ORTHO05D005327 1.2e-07 60.8 88 40.9
FAN02G2952 Fragaria x ananassa HOM05D000062 ORTHO05D000043 1.6e-07 60.5 49 69.4
Lalb_Chr16g0386341 Lupinus albus HOM05D003663 ORTHO05D005327 3.6e-07 59.3 85 34.1
Potri.016G009000 Populus trichocarpa HOM05D003663 ORTHO05D005327 1.1e-06 57.8 58 44.8


User provided reference genes

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