Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0016149 Sechium edule HOM05D005881 ORTHO05D007298 2.6e-39 164.9 79 100.0
ClCG10G007340 Citrullus lanatus HOM05D005881 ORTHO05D007298 2.4e-37 158.3 78 94.9
Ciclev10002996m.g Citrus clementina HOM05D005881 ORTHO05D007298 6.6e-35 150.2 77 88.3
Haze_07862 Corylus avellana HOM05D005881 ORTHO05D007298 8.6e-35 149.8 77 88.3
Cfa026039 Carpinus fangiana HOM05D005881 ORTHO05D007298 3.3e-34 147.9 77 87.0
QL02p102397 Quercus lobata HOM05D005881 ORTHO05D007298 4.3e-34 147.5 75 89.3
Gohir.1Z049413 Gossypium hirsutum HOM05D005881 ORTHO05D007298 5.6e-34 147.1 77 88.3
Gohir.1Z049621 Gossypium hirsutum HOM05D005881 ORTHO05D007298 5.6e-34 147.1 77 88.3
Prupe.1G582900 Prunus persica HOM05D005881 ORTHO05D007298 5.6e-34 147.1 77 87.0
QL02p103034 Quercus lobata HOM05D005881 ORTHO05D007298 5.6e-34 147.1 75 89.3
Duzib052G1237 Durio zibethinus HOM05D005881 ORTHO05D007298 7.3e-34 146.7 77 87.0
Gohir.D10G000200 Gossypium hirsutum HOM05D005881 ORTHO05D007298 7.3e-34 146.7 77 87.0
Gorai.002G000700 Gossypium raimondii HOM05D005881 ORTHO05D007298 7.3e-34 146.7 77 88.3
arahy.Tifrunner.gnm1.ann1.8HB0N1 Arachis hypogaea HOM05D005881 ORTHO05D007298 9.5e-34 146.4 77 87.0
Haze_12831 Corylus avellana HOM05D005881 ORTHO05D007298 9.5e-34 146.4 77 87.0
Lj6g0001713 Lotus japonicus HOM05D005881 ORTHO05D007298 9.5e-34 146.4 77 88.3
Manes.10G110680 Manihot esculenta HOM05D005881 ORTHO05D007298 1.2e-33 146.0 77 85.7
Potri.004G227500 Populus trichocarpa HOM05D005881 ORTHO05D007298 1.2e-33 146.0 77 87.0
Thecc.02G037800 Theobroma cacao HOM05D005881 ORTHO05D007298 1.2e-33 146.0 77 87.0
CiPaw.06G026000 Carya illinoinensis HOM05D005881 ORTHO05D007298 1.6e-33 145.6 77 84.4
Gohir.A01G000500 Gossypium hirsutum HOM05D005881 ORTHO05D007298 1.6e-33 145.6 77 87.0
MD09G1270200 Malus domestica HOM05D005881 ORTHO05D007298 1.6e-33 145.6 77 85.7
MD17G1268300 Malus domestica HOM05D005881 ORTHO05D007298 1.6e-33 145.6 77 85.7
arahy.Tifrunner.gnm1.ann1.6Q1IVA Arachis hypogaea HOM05D005881 ORTHO05D007298 2.1e-33 145.2 78 85.9
arahy.Tifrunner.gnm1.ann1.GZL8T6 Arachis hypogaea HOM05D005881 ORTHO05D007298 2.1e-33 145.2 78 85.9
CANSAT54G2245 Cannabis sativa HOM05D005881 ORTHO05D007298 2.1e-33 145.2 77 87.0
Glyma.11G208400 Glycine max HOM05D005881 ORTHO05D007298 2.1e-33 145.2 77 84.4
Glyma.18G045400 Glycine max HOM05D005881 ORTHO05D007298 2.1e-33 145.2 77 84.4
vmacro19838 Vaccinium macrocarpon HOM05D005881 ORTHO05D007298 2.8e-33 144.8 76 85.5
Lalb_Chr18g0053871 Lupinus albus HOM05D005881 ORTHO05D007298 4.7e-33 144.1 77 84.4
Atru.chr6.354 Acer truncatum HOM05D005881 ORTHO05D007298 6.2e-33 143.7 75 85.3
CAN.G855.36 Capsicum annuum HOM05D005881 ORTHO05D007298 6.2e-33 143.7 77 84.4
THA.LOC104812459 Tarenaya hassleriana HOM05D005881 ORTHO05D007298 6.2e-33 143.7 77 83.1
Aqoxy1G00234 Aquilegia oxysepala HOM05D005881 ORTHO05D007298 8.1e-33 143.3 75 86.7
Hma1.2p1_0052F.1_g029890 Hydrangea macrophylla HOM05D005881 ORTHO05D007298 8.1e-33 143.3 77 84.4
Lsat_1_v5_gn_9_121521 Lactuca sativa HOM05D005881 ORTHO05D007298 8.1e-33 143.3 77 85.7
Manes.07G028000 Manihot esculenta HOM05D005881 ORTHO05D007298 8.1e-33 143.3 77 84.4
Oeu010217.3 Olea europaea HOM05D005881 ORTHO05D007298 1.1e-32 142.9 77 83.1
PSO017G1314 Papaver somniferum HOM05D005881 ORTHO05D007298 1.1e-32 142.9 77 85.7
Peaxi162Scf00450g00736 Petunia axillaris HOM05D005881 ORTHO05D007298 1.1e-32 142.9 77 84.4
TWI79G0203 Tripterygium wilfordii HOM05D005881 ORTHO05D007298 1.1e-32 142.9 75 84.0
Eucgr.K01416 Eucalyptus grandis HOM05D005881 ORTHO05D007298 1.4e-32 142.5 77 83.1
Nitab4.5_0001057g0140 Nicotiana tabacum HOM05D005881 ORTHO05D007298 1.4e-32 142.5 77 83.1
PSO407G0212 Papaver somniferum HOM05D005881 ORTHO05D007298 1.4e-32 142.5 77 84.4
CSS0041173 Camellia sinensis var. sinensis HOM05D005881 ORTHO05D007298 1.8e-32 142.1 75 85.3
Medtr3g064240 Medicago truncatula HOM05D005881 ORTHO05D007298 1.8e-32 142.1 77 84.4
Oeu003780.1 Olea europaea HOM05D005881 ORTHO05D007298 1.8e-32 142.1 77 83.1
DCAR_001713 Daucus carota HOM05D005881 ORTHO05D007298 2.4e-32 141.7 75 85.3
PSO170G3105 Papaver somniferum HOM05D005881 ORTHO05D007298 2.4e-32 141.7 77 84.4
Sc07g0003630 Simmondsia chinensis HOM05D005881 ORTHO05D007298 2.4e-32 141.7 77 83.1
Solyc01g103190.3 Solanum lycopersicum HOM05D005881 ORTHO05D007298 2.4e-32 141.7 77 81.8
Sopen01g045620 Solanum pennellii HOM05D005881 ORTHO05D007298 2.4e-32 141.7 77 81.8
AT4G21192 Arabidopsis thaliana HOM05D005881 ORTHO05D007298 3.1e-32 141.4 75 84.0
Cc02_g34860 Coffea canephora HOM05D005881 ORTHO05D007298 3.1e-32 141.4 77 83.1
PGR042G2514 Punica granatum HOM05D005881 ORTHO05D007298 3.1e-32 141.4 77 84.4
RcHm_v2.0_Chr7g0222581 Rosa chinensis HOM05D005881 ORTHO05D007298 3.1e-32 141.4 77 84.4
AL3G11760 Arabidopsis lyrata HOM05D005881 ORTHO05D007298 4.0e-32 141.0 75 84.0
arahy.Tifrunner.gnm1.ann1.VTJ29R Arachis hypogaea HOM05D005881 ORTHO05D007298 4.0e-32 141.0 83 80.7
AUR62022918 Chenopodium quinoa HOM05D005881 ORTHO05D007298 4.0e-32 141.0 77 84.4
Nn2g11943 Nelumbo nucifera HOM05D005881 ORTHO05D007298 4.0e-32 141.0 77 84.4
Sopen01g045600 Solanum pennellii HOM05D005881 ORTHO05D007298 4.0e-32 141.0 77 81.8
FvH4_5g29590 Fragaria vesca HOM05D005881 ORTHO05D007298 5.2e-32 140.6 78 80.8
SGA_v2.0_scaffold254G45257 Striga asiatica HOM05D005881 ORTHO05D007298 5.2e-32 140.6 76 81.6
Aa31LG6G3200 Aethionema arabicum HOM05D005881 ORTHO05D007298 6.8e-32 140.2 77 80.5
AL7G32920 Arabidopsis lyrata HOM05D005881 ORTHO05D007298 6.8e-32 140.2 75 82.7
ECA246G1780 Erigeron canadensis HOM05D005881 ORTHO05D007298 6.8e-32 140.2 77 83.1
TPR.G37331 Trifolium pratense HOM05D005881 ORTHO05D007298 6.8e-32 140.2 77 83.1
Sp7g19280 Schrenkiella parvula HOM05D005881 ORTHO05D007298 1.2e-31 139.4 77 80.5
Os02g0560450 Oryza sativa ssp. japonica HOM05D005881 ORTHO05D007298 1.5e-31 139.0 77 84.4
Carub.0007s2023 Capsella rubella HOM05D005881 ORTHO05D007298 2.0e-31 138.7 75 82.7
CARHR227780 Cardamine hirsuta HOM05D005881 ORTHO05D007298 2.0e-31 138.7 75 82.7
Thhalv10026658m.g Eutrema salsugineum HOM05D005881 ORTHO05D007298 2.0e-31 138.7 75 82.7
HanXRQChr17g0543881 Helianthus annuus HOM05D005881 ORTHO05D007298 2.0e-31 138.7 77 83.1
MBI06_g43454_MAGBIO Magnolia biondii HOM05D005881 ORTHO05D007298 2.0e-31 138.7 77 83.1
CDE08G1319 Ceratophyllum demersum HOM05D005881 ORTHO05D007298 2.6e-31 138.3 75 82.7
Ah.00g001370 Amaranthus hybridus HOM05D005881 ORTHO05D007298 3.4e-31 137.9 77 83.1
Migut.O00861 Erythranthe guttata HOM05D005881 ORTHO05D007298 3.4e-31 137.9 77 80.5
C03p83470 Brassica napus HOM05D005881 ORTHO05D007298 4.4e-31 137.5 75 80.0
THA.LOC104812941 Tarenaya hassleriana HOM05D005881 ORTHO05D007298 4.4e-31 137.5 75 80.0
Gohir.1Z049575 Gossypium hirsutum HOM05D005881 ORTHO05D007298 7.6e-31 136.7 77 84.4
Gorai.002G000900 Gossypium raimondii HOM05D005881 ORTHO05D007298 7.6e-31 136.7 77 84.4
EL10Ac2g04867 Beta vulgaris HOM05D005881 ORTHO05D007298 9.9e-31 136.3 77 81.8
BcaC01g00708 Brassica carinata HOM05D005881 ORTHO05D007298 9.9e-31 136.3 75 80.0
BolC3t20627H Brassica oleracea HOM05D005881 ORTHO05D007298 9.9e-31 136.3 75 80.0
BraA08t33500Z Brassica rapa HOM05D005881 ORTHO05D007298 9.9e-31 136.3 75 80.0
A03p52690 Brassica napus HOM05D005881 ORTHO05D007298 1.7e-30 135.6 75 81.3
Migut.N00857 Erythranthe guttata HOM05D005881 ORTHO05D007298 1.7e-30 135.6 74 82.4
BcaC06g30655 Brassica carinata HOM05D005881 ORTHO05D007298 2.2e-30 135.2 75 81.3
BraA03t14343Z Brassica rapa HOM05D005881 ORTHO05D007298 2.2e-30 135.2 75 81.3
TAR623G1668 Trochodendron aralioides HOM05D005881 ORTHO05D007298 2.2e-30 135.2 77 79.2
BcaNung00865 Brassica carinata HOM05D005881 ORTHO05D007298 2.9e-30 134.8 78 80.8
C07p51120 Brassica napus HOM05D005881 ORTHO05D007298 2.9e-30 134.8 78 80.8
BolC7t45612H Brassica oleracea HOM05D005881 ORTHO05D007298 2.9e-30 134.8 78 80.8
CsaV3_3G006580 Cucumis sativus L. HOM05D005881 ORTHO05D007298 3.8e-30 134.4 68 94.1
Nitab4.5_0002546g0080 Nicotiana tabacum HOM05D005881 ORTHO05D007298 1.1e-29 132.9 91 70.3
GSVIVG01023198001 Vitis vinifera HOM05D005881 ORTHO05D007298 3.2e-29 131.3 77 77.9
FAN18G0030 Fragaria x ananassa HOM05D005881 ORTHO05D007298 9.2e-29 129.8 95 66.3
Gohir.1Z049313 Gossypium hirsutum HOM05D005881 ORTHO05D007298 7.8e-28 126.7 77 79.2
COL.COLO4_17857 Corchorus olitorius HOM05D005881 ORTHO05D007298 5.1e-27 124.0 66 89.4
PGSC0003DMG400024874 Solanum tuberosum HOM05D005881 ORTHO05D007298 5.1e-27 124.0 112 56.2
Gohir.A01G140426 Gossypium hirsutum HOM05D005881 ORTHO05D007298 1.9e-26 122.1 66 86.4
Gohir.1Z049675 Gossypium hirsutum HOM05D005881 ORTHO05D007298 7.3e-26 120.2 61 85.2
Haze_20435 Corylus avellana HOM05D005881 ORTHO05D007298 1.4e-24 115.9 63 84.1
Gohir.1Z049721 Gossypium hirsutum HOM05D005881 ORTHO05D007298 1.8e-24 115.5 68 83.8
Gorai.011G000600 Gossypium raimondii HOM05D005881 ORTHO05D007298 2.4e-24 115.2 68 82.4
Zm00001eb244030 Zea mays HOM05D005881 ORTHO05D007298 3.1e-24 114.8 66 81.8
Cfa026049 Carpinus fangiana HOM05D005881 ORTHO05D007298 9.0e-24 113.2 66 78.8
Cfa021151 Carpinus fangiana HOM05D005881 ORTHO05D007298 2.0e-23 112.1 63 81.0
Nitab4.5_0001057g0150 Nicotiana tabacum HOM05D005881 ORTHO05D007298 2.0e-23 112.1 63 82.5
SGA_v2.0_scaffold131G34400 Striga asiatica HOM05D005881 ORTHO05D007298 2.6e-23 111.7 65 75.4
Rhsim11G0129900 Rhododendron simsii HOM05D005881 ORTHO05D007298 3.4e-23 111.3 61 83.6
A08p15220 Brassica napus HOM05D005881 ORTHO05D007298 4.4e-23 110.9 68 75.0
Mapoly0035s0117 Marchantia polymorpha HOM05D005881 ORTHO05D007298 9.9e-23 109.8 74 67.6
unitig_22.g6105 Utricularia gibba HOM05D005881 ORTHO05D007298 3.8e-22 107.8 66 72.7
Phvul.006G085400 Phaseolus vulgaris HOM05D005881 ORTHO05D007298 6.4e-22 107.1 50 86.0
MBI06_g45555_MAGBIO Magnolia biondii HOM05D005881 ORTHO05D007298 8.4e-22 106.7 64 78.1
AagrBONN_evm.TU.Sc2ySwM_117.2390 Anthoceros agrestis HOM05D005881 ORTHO05D007298 7.1e-21 103.6 78 61.5
Haze_09300 Corylus avellana HOM05D005881 ORTHO05D007298 6.0e-20 100.5 63 77.8
Haze_10676 Corylus avellana HOM05D005881 ORTHO05D007298 7.8e-20 100.1 61 78.7
Rhsim06G0200500 Rhododendron simsii HOM05D005881 ORTHO05D007298 1.0e-19 99.8 61 73.8
Haze_10008 Corylus avellana HOM05D000045 ORTHO05D001346 8.7e-19 96.7 61 72.1
EL10Ac4g10162 Beta vulgaris HOM05D002030 ORTHO05D007413 1.1e-18 96.3 62 69.4
EL10Ac4g07780 Beta vulgaris HOM05D000065 ORTHO05D002939 2.5e-18 95.1 61 72.1
EL10Ac4g07877 Beta vulgaris HOM05D005881 ORTHO05D007298 2.5e-18 95.1 61 72.1
C04p26430 Brassica napus HOM05D005881 ORTHO05D007298 3.3e-18 94.7 49 79.6
BolC4t24162H Brassica oleracea HOM05D005881 ORTHO05D007298 3.3e-18 94.7 49 79.6
BcaC02g10665 Brassica carinata HOM05D005881 ORTHO05D007298 1.6e-17 92.4 73 61.6
EL10Ac7g16281 Beta vulgaris HOM05D005881 ORTHO05D007298 4.0e-16 87.8 66 63.6
HPP92_009201 Vanilla planifolia HOM05D005881 ORTHO05D007298 4.5e-15 84.3 49 81.6
MELO3C032219.2 Cucumis melo HOM05D005881 ORTHO05D007298 1.6e-12 75.9 35 88.6
arahy.Tifrunner.gnm1.ann1.0A1TZX Arachis hypogaea HOM05D001400 ORTHO05D016394 6.7e-11 70.5 36 80.6
MBI06_g35042_MAGBIO Magnolia biondii HOM05D005881 ORTHO05D007298 1.1e-10 69.7 62 56.5
EL10Ac4g10126 Beta vulgaris HOM05D002030 ORTHO05D007413 4.3e-10 67.8 50 62.0
Nitab4.5_0001129g0150 Nicotiana tabacum HOM05D005881 ORTHO05D007298 1.3e-09 66.2 39 84.6
MCO07G551 Micromonas commoda HOM05D005881 ORTHO05D007298 3.7e-09 64.7 70 40.0
SHI38298 Sapria himalayana HOM05D005881 ORTHO05D000001 1.2e-07 59.7 59 49.2
SalBow5G0226 Salvia bowleyana HOM05D005881 ORTHO05D007298 1.7e-06 55.8 37 64.9


User provided reference genes

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