Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0016112 Sechium edule HOM05D002758 ORTHO05D002885 3.5e-51 204.9 123 100.0
ClCG07G012650 Citrullus lanatus HOM05D002758 ORTHO05D002885 1.9e-28 129.4 134 70.9
Sed0015979 Sechium edule HOM05D002758 ORTHO05D002885 1.1e-25 120.2 130 65.4
MELO3C017886.2 Cucumis melo HOM05D002758 ORTHO05D002885 2.2e-21 105.9 130 63.1
CsaV3_4G001540 Cucumis sativus L. HOM05D002758 ORTHO05D002885 5.5e-20 101.3 133 58.6
Duzib235G1225 Durio zibethinus HOM05D002758 ORTHO05D002885 4.3e-17 91.7 132 46.2
Manes.11G055700 Manihot esculenta HOM05D002758 ORTHO05D002885 1.7e-16 89.7 122 50.0
Carub.0001s4153 Capsella rubella HOM05D002758 ORTHO05D002885 2.8e-16 89.0 134 54.5
A05p18910 Brassica napus HOM05D002758 ORTHO05D002885 3.7e-16 88.6 130 44.6
BcaB02g10984 Brassica carinata HOM05D002758 ORTHO05D002885 4.8e-16 88.2 132 53.0
Thecc.06G021700 Theobroma cacao HOM05D002758 ORTHO05D002885 4.8e-16 88.2 130 43.8
BcaC08g44003 Brassica carinata HOM05D002758 ORTHO05D002885 6.3e-16 87.8 135 45.2
C06p14110 Brassica napus HOM05D002758 ORTHO05D002885 6.3e-16 87.8 131 50.4
BolC6t36589H Brassica oleracea HOM05D002758 ORTHO05D002885 6.3e-16 87.8 131 50.4
BolC6t35882H Brassica oleracea HOM05D002758 ORTHO05D002885 1.1e-15 87.0 133 42.9
THA.LOC104815531 Tarenaya hassleriana HOM05D002758 ORTHO05D002885 1.1e-15 87.0 136 51.5
BcaC08g43429 Brassica carinata HOM05D002758 ORTHO05D002885 1.4e-15 86.7 133 42.9
Thhalv10011857m.g Eutrema salsugineum HOM05D002758 ORTHO05D002885 1.4e-15 86.7 135 51.1
AL1G60820 Arabidopsis lyrata HOM05D002758 ORTHO05D002885 1.8e-15 86.3 133 51.9
A06p01750 Brassica napus HOM05D002758 ORTHO05D002885 1.8e-15 86.3 135 50.4
BraA05t20788Z Brassica rapa HOM05D002758 ORTHO05D002885 3.1e-15 85.5 129 49.6
TWI18G1221 Tripterygium wilfordii HOM05D002758 ORTHO05D002885 3.1e-15 85.5 135 43.0
Sp1g39120 Schrenkiella parvula HOM05D002758 ORTHO05D002885 5.3e-15 84.7 135 52.6
BcaC09g48555 Brassica carinata HOM05D002758 ORTHO05D002885 6.9e-15 84.3 132 44.7
C01p48670 Brassica napus HOM05D002758 ORTHO05D002885 6.9e-15 84.3 132 44.7
BolC1t04821H Brassica oleracea HOM05D002758 ORTHO05D002885 6.9e-15 84.3 132 44.7
BraA06t23394Z Brassica rapa HOM05D002758 ORTHO05D002885 6.9e-15 84.3 135 49.6
Gohir.A10G074300 Gossypium hirsutum HOM05D002758 ORTHO05D002885 6.9e-15 84.3 132 42.4
Duzib160G0702 Durio zibethinus HOM05D002758 ORTHO05D002885 9.1e-15 84.0 129 45.0
CARHR042690 Cardamine hirsuta HOM05D002758 ORTHO05D002885 1.2e-14 83.6 130 49.2
BcaC08g43430 Brassica carinata HOM05D002758 ORTHO05D002885 1.5e-14 83.2 136 43.4
AT1G52565 Arabidopsis thaliana HOM05D002758 ORTHO05D002885 2.0e-14 82.8 131 53.4
Gohir.D10G077100 Gossypium hirsutum HOM05D002758 ORTHO05D002885 2.6e-14 82.4 132 42.4
COL.COLO4_12950 Corchorus olitorius HOM05D002758 ORTHO05D002885 3.4e-14 82.0 132 43.2
Atru.chr1.2990 Acer truncatum HOM05D002758 ORTHO05D002885 4.5e-14 81.6 129 42.6
Cpa.g.sc10.256 Carica papaya HOM05D002758 ORTHO05D002885 1.0e-13 80.5 130 51.5
Prupe.3G084900 Prunus persica HOM05D002758 ORTHO05D002885 1.7e-13 79.7 134 42.5
CiPaw.01G246400 Carya illinoinensis HOM05D002758 ORTHO05D002885 2.2e-13 79.3 130 43.1
Gohir.A05G125833 Gossypium hirsutum HOM05D002758 ORTHO05D002885 2.2e-13 79.3 130 43.1
Gohir.A05G125900 Gossypium hirsutum HOM05D002758 ORTHO05D002885 2.2e-13 79.3 130 43.1
arahy.Tifrunner.gnm1.ann1.3WRP69 Arachis hypogaea HOM05D002758 ORTHO05D002885 6.5e-13 77.8 123 52.8
arahy.Tifrunner.gnm1.ann1.A8WRUN Arachis hypogaea HOM05D002758 ORTHO05D002885 6.5e-13 77.8 123 52.8
CANSAT56G1388 Cannabis sativa HOM05D002758 ORTHO05D002885 6.5e-13 77.8 136 39.7
Gohir.D05G126800 Gossypium hirsutum HOM05D002758 ORTHO05D002885 6.5e-13 77.8 130 42.3
Manes.04G113800 Manihot esculenta HOM05D002758 ORTHO05D002885 6.5e-13 77.8 135 41.5
Gorai.009G130900 Gossypium raimondii HOM05D002758 ORTHO05D002885 1.1e-12 77.0 126 42.9
QL09p026717 Quercus lobata HOM05D002758 ORTHO05D002885 1.4e-12 76.6 130 50.0
Gorai.011G083300 Gossypium raimondii HOM05D002758 ORTHO05D002885 1.9e-12 76.3 132 40.9
BcaB04g20905 Brassica carinata HOM05D002758 ORTHO05D002885 3.2e-12 75.5 135 41.5
C06p07990 Brassica napus HOM05D002758 ORTHO05D002885 4.2e-12 75.1 71 53.5
Cfa001976 Carpinus fangiana HOM05D002758 ORTHO05D002885 4.2e-12 75.1 123 44.7
Ciclev10026775m.g Citrus clementina HOM05D002758 ORTHO05D002885 5.5e-12 74.7 126 41.3
Dinv30594 Davidia involucrata HOM05D002758 ORTHO05D002885 9.4e-12 73.9 138 40.6
CSS0041896 Camellia sinensis var. sinensis HOM05D002758 ORTHO05D002885 1.2e-11 73.6 131 39.7
CiPaw.02G156300 Carya illinoinensis HOM05D002758 ORTHO05D002885 1.2e-11 73.6 126 40.5
PGR031G0668 Punica granatum HOM05D002758 ORTHO05D002885 1.6e-11 73.2 128 39.1
Actinidia01753 Actinidia chinensis HOM05D002758 ORTHO05D002885 2.1e-11 72.8 133 42.1
Actinidia15774 Actinidia chinensis HOM05D002758 ORTHO05D002885 2.7e-11 72.4 136 39.7
Aa31LG10G2440 Aethionema arabicum HOM05D002758 ORTHO05D002885 2.7e-11 72.4 148 39.9
Thhalv10021746m.g Eutrema salsugineum HOM05D002758 ORTHO05D002885 3.6e-11 72.0 139 40.3
Aa31LG8G2960 Aethionema arabicum HOM05D002758 ORTHO05D002885 1.0e-10 70.5 129 46.5
Sp3g14090 Schrenkiella parvula HOM05D002758 ORTHO05D002885 1.0e-10 70.5 143 46.9
Nn8g39466 Nelumbo nucifera HOM05D002758 ORTHO05D002885 1.4e-10 70.1 139 36.7
vmacro18989 Vaccinium macrocarpon HOM05D002758 ORTHO05D002885 1.4e-10 70.1 134 37.3
AL3G28420 Arabidopsis lyrata HOM05D002758 ORTHO05D002885 1.8e-10 69.7 128 40.6
A01p38340 Brassica napus HOM05D002758 ORTHO05D002885 1.8e-10 69.7 129 49.6
BraA01t03885Z Brassica rapa HOM05D002758 ORTHO05D002885 1.8e-10 69.7 129 48.8
FAN02G3379 Fragaria x ananassa HOM05D002758 ORTHO05D002885 1.8e-10 69.7 124 37.9
FAN05G1526 Fragaria x ananassa HOM05D002758 ORTHO05D002885 1.8e-10 69.7 122 38.5
FAN14G2484 Fragaria x ananassa HOM05D002758 ORTHO05D002885 1.8e-10 69.7 124 37.9
QL05p029455 Quercus lobata HOM05D002758 ORTHO05D002885 1.8e-10 69.7 130 40.8
AT3G15760 Arabidopsis thaliana HOM05D002758 ORTHO05D002885 3.0e-10 68.9 128 40.6
A05p33610 Brassica napus HOM05D002758 ORTHO05D002885 3.0e-10 68.9 126 42.9
C05p50610 Brassica napus HOM05D002758 ORTHO05D002885 3.0e-10 68.9 126 42.9
BolC5t33807H Brassica oleracea HOM05D002758 ORTHO05D002885 3.0e-10 68.9 126 42.9
Potri.001G192800 Populus trichocarpa HOM05D002758 ORTHO05D002885 3.0e-10 68.9 142 34.5
GSVIVG01017318001 Vitis vinifera HOM05D002758 ORTHO05D002885 3.0e-10 68.9 136 38.2
BcaC05g28933 Brassica carinata HOM05D002758 ORTHO05D002885 3.9e-10 68.6 126 42.9
Ciclev10009903m.g Citrus clementina HOM05D002758 ORTHO05D002885 3.9e-10 68.6 132 39.4
RcHm_v2.0_Chr2g0135861 Rosa chinensis HOM05D002758 ORTHO05D002885 3.9e-10 68.6 125 38.4
BraA05t22185Z Brassica rapa HOM05D002758 ORTHO05D002885 5.1e-10 68.2 126 42.1
FvH4_6g29910 Fragaria vesca HOM05D002758 ORTHO05D002885 6.7e-10 67.8 124 37.1
Carub.0003s1550 Capsella rubella HOM05D002758 ORTHO05D002885 1.1e-09 67.0 130 38.5
MD17G1209300 Malus domestica HOM05D002758 ORTHO05D002885 2.0e-09 66.2 133 37.6
Hund26508 Selenicereus undatus HOM05D002758 ORTHO05D002885 2.0e-09 66.2 135 36.3
CARHR090850 Cardamine hirsuta HOM05D002758 ORTHO05D002885 2.6e-09 65.9 126 40.5
Duzib187G0530 Durio zibethinus HOM05D002758 ORTHO05D002885 2.6e-09 65.9 138 37.0
BcaB06g25687 Brassica carinata HOM05D002758 ORTHO05D002885 3.3e-09 65.5 123 49.6
Dinv36518 Davidia involucrata HOM05D002758 ORTHO05D002885 4.4e-09 65.1 134 41.8
Gohir.A07G036200 Gossypium hirsutum HOM05D002758 ORTHO05D002885 5.7e-09 64.7 136 36.0
PGSC0003DMG400000615 Solanum tuberosum HOM05D002758 ORTHO05D002885 5.7e-09 64.7 128 38.3
Nn2g12045 Nelumbo nucifera HOM05D002758 ORTHO05D002885 7.4e-09 64.3 144 34.0
Thecc.09G127400 Theobroma cacao HOM05D002758 ORTHO05D002885 7.4e-09 64.3 148 40.5
RcHm_v2.0_Chr2g0088291 Rosa chinensis HOM05D002758 ORTHO05D002885 1.3e-08 63.5 137 35.0
Duzib168G0478 Durio zibethinus HOM05D002758 ORTHO05D002885 1.7e-08 63.2 144 41.7
Gorai.001G042500 Gossypium raimondii HOM05D002758 ORTHO05D002885 1.7e-08 63.2 136 37.5
Oeu027807.1 Olea europaea HOM05D002758 ORTHO05D002885 1.7e-08 63.2 135 37.0
Solyc03g116630.3 Solanum lycopersicum HOM05D002758 ORTHO05D002885 1.7e-08 63.2 135 40.7
FAN28G2446 Fragaria x ananassa HOM05D000315 ORTHO05D001379 2.2e-08 62.8 143 33.6
Gohir.A05G016000 Gossypium hirsutum HOM05D002758 ORTHO05D002885 2.2e-08 62.8 137 36.5
Gohir.D05G017100 Gossypium hirsutum HOM05D002758 ORTHO05D002885 2.2e-08 62.8 137 36.5
Gorai.009G017300 Gossypium raimondii HOM05D002758 ORTHO05D002885 2.2e-08 62.8 137 36.5
HanXRQChr12g0356261 Helianthus annuus HOM05D002758 ORTHO05D002885 2.2e-08 62.8 135 36.3
Nitab4.5_0005728g0010 Nicotiana tabacum HOM05D002758 ORTHO05D002885 2.2e-08 62.8 139 36.7
Glyma.04G147200 Glycine max HOM05D002758 ORTHO05D002885 2.8e-08 62.4 147 34.7
ECA234G1831 Erigeron canadensis HOM05D002758 ORTHO05D002885 3.7e-08 62.0 141 38.3
Migut.I00776 Erythranthe guttata HOM05D002758 ORTHO05D002885 3.7e-08 62.0 145 35.9
FvH4_1g03160 Fragaria vesca HOM05D002758 ORTHO05D002885 3.7e-08 62.0 136 34.6
FAN23G2585 Fragaria x ananassa HOM05D002758 ORTHO05D002885 3.7e-08 62.0 137 34.3
Sopen03g035550 Solanum pennellii HOM05D002758 ORTHO05D002885 3.7e-08 62.0 131 37.4
TAR626G0616 Trochodendron aralioides HOM05D002758 ORTHO05D002885 3.7e-08 62.0 133 34.6
FAN26G2290 Fragaria x ananassa HOM05D002758 ORTHO05D002885 4.8e-08 61.6 138 34.8
HanXRQChr10g0315561 Helianthus annuus HOM05D002758 ORTHO05D002885 4.8e-08 61.6 139 37.4
Phvul.003G165200 Phaseolus vulgaris HOM05D002758 ORTHO05D002885 4.8e-08 61.6 132 32.6
Cc04_g04270 Coffea canephora HOM05D002758 ORTHO05D002885 6.3e-08 61.2 127 36.2
Hma1.2p1_0018F.1_g012340 Hydrangea macrophylla HOM05D002758 ORTHO05D002885 6.3e-08 61.2 126 40.5
Psat5g302120 Pisum sativum HOM05D002758 ORTHO05D002885 6.3e-08 61.2 128 35.9
Oeu034104.1 Olea europaea HOM05D002758 ORTHO05D002885 8.2e-08 60.8 138 39.9
SGA_v2.0_scaffold5G02683 Striga asiatica HOM05D002758 ORTHO05D002885 8.2e-08 60.8 139 36.0
DCAR_020919 Daucus carota HOM05D002758 ORTHO05D002885 1.1e-07 60.5 114 46.5
Duzib150G0461 Durio zibethinus HOM05D002758 ORTHO05D002885 1.1e-07 60.5 124 33.9
Gohir.D07G040200 Gossypium hirsutum HOM05D002758 ORTHO05D002885 1.1e-07 60.5 136 38.2
Potri.006G069100 Populus trichocarpa HOM05D002758 ORTHO05D002885 1.1e-07 60.5 142 33.8
FAN19G2709 Fragaria x ananassa HOM05D002758 ORTHO05D002885 1.4e-07 60.1 137 34.3
Aqoxy7G03691 Aquilegia oxysepala HOM05D002758 ORTHO05D002885 1.8e-07 59.7 140 35.0
Nitab4.5_0001764g0140 Nicotiana tabacum HOM05D002758 ORTHO05D002885 1.8e-07 59.7 132 34.8
Psat4g039800 Pisum sativum HOM05D002758 ORTHO05D002885 1.8e-07 59.7 138 42.8
Sed0016169 Sechium edule HOM05D002758 ORTHO05D002885 1.8e-07 59.7 143 36.4
Peaxi162Scf00046g00524 Petunia axillaris HOM05D002758 ORTHO05D002885 2.4e-07 59.3 133 42.1
Glyma.17G114300 Glycine max HOM05D002758 ORTHO05D002885 3.1e-07 58.9 151 33.8
Peaxi162Scf00332g00756 Petunia axillaris HOM05D002758 ORTHO05D002885 4.1e-07 58.5 134 35.8
Sed0027515 Sechium edule HOM05D002758 ORTHO05D002885 5.3e-07 58.2 118 37.3
EL10Ac8g18667 Beta vulgaris HOM05D002758 ORTHO05D002885 7.0e-07 57.8 125 36.0
GSVIVG01015544001 Vitis vinifera HOM05D002758 ORTHO05D002885 7.0e-07 57.8 123 48.0
Glyma.15G008300 Glycine max HOM05D002758 ORTHO05D002885 9.1e-07 57.4 119 43.7
ECA240G3055 Erigeron canadensis HOM05D002758 ORTHO05D002885 1.2e-06 57.0 64 48.4
Glyma.13G166500 Glycine max HOM05D002758 ORTHO05D002885 1.2e-06 57.0 150 38.7
SalBow1G1971 Salvia bowleyana HOM05D002758 ORTHO05D002885 1.2e-06 57.0 126 40.5
VMungo1215G1272 Vigna mungo HOM05D002758 ORTHO05D002885 1.2e-06 57.0 132 31.8
MSTRG.10674 Avicennia marina HOM05D002758 ORTHO05D002885 1.5e-06 56.6 132 44.7
Cc06_g08410 Coffea canephora HOM05D002758 ORTHO05D002885 1.5e-06 56.6 137 33.6
Potri.018G131100 Populus trichocarpa HOM05D002758 ORTHO05D002885 1.5e-06 56.6 148 33.8
arahy.Tifrunner.gnm1.ann1.75SBZZ Arachis hypogaea HOM05D002758 ORTHO05D002885 2.0e-06 56.2 141 31.9
Actinidia40476 Actinidia chinensis HOM05D002758 ORTHO05D002885 3.4e-06 55.5 126 32.5
Lsat_1_v5_gn_7_45161 Lactuca sativa HOM05D002758 ORTHO05D002885 3.4e-06 55.5 140 35.7
Oeu058050.1 Olea europaea HOM05D002758 ORTHO05D002885 3.4e-06 55.5 133 44.4
HanXRQChr05g0138371 Helianthus annuus HOM05D002758 ORTHO05D002885 4.5e-06 55.1 134 39.6
HanXRQChr05g0140201 Helianthus annuus HOM05D002758 ORTHO05D002885 4.5e-06 55.1 134 39.6
Lsat_1_v5_gn_5_95300 Lactuca sativa HOM05D002758 ORTHO05D002885 4.5e-06 55.1 143 34.3
Phvul.005G177400 Phaseolus vulgaris HOM05D002758 ORTHO05D002885 4.5e-06 55.1 126 39.7
TAR383G0328 Trochodendron aralioides HOM05D002758 ORTHO05D002885 5.9e-06 54.7 119 32.8
VMungo1080G1568 Vigna mungo HOM05D002758 ORTHO05D002885 5.9e-06 54.7 126 33.3
Actinidia21981 Actinidia chinensis HOM05D002758 ORTHO05D002885 7.7e-06 54.3 122 36.1
CANSAT78G2290 Cannabis sativa HOM05D002758 ORTHO05D002885 7.7e-06 54.3 101 38.6
Hund09249 Selenicereus undatus HOM05D002758 ORTHO05D002885 7.7e-06 54.3 65 47.7


User provided reference genes

Program Settings