Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0016106 Sechium edule HOM05D003935 ORTHO05D005096 2.9e-182 641.7 316 100.0
ClCG06G002480 Citrullus lanatus HOM05D003935 ORTHO05D005096 2.3e-179 632.1 316 97.8
MELO3C022280.2 Cucumis melo HOM05D003935 ORTHO05D005096 8.7e-179 630.2 316 97.2
CsaV3_6G008640 Cucumis sativus L. HOM05D003935 ORTHO05D005096 1.9e-178 629.0 316 97.5
GSVIVG01018224001 Vitis vinifera HOM05D003935 ORTHO05D005096 7.4e-162 573.9 314 88.5
Manes.06G132800 Manihot esculenta HOM05D003935 ORTHO05D005096 3.1e-160 568.5 314 86.9
Nn6g33882 Nelumbo nucifera HOM05D003935 ORTHO05D005096 5.3e-160 567.8 314 86.3
Thecc.01G388100 Theobroma cacao HOM05D003935 ORTHO05D005096 1.2e-159 566.6 314 87.3
TWI14G1423 Tripterygium wilfordii HOM05D003935 ORTHO05D005096 4.5e-159 564.7 314 86.6
QL04p034713 Quercus lobata HOM05D003935 ORTHO05D005096 1.0e-158 563.5 315 88.6
CSS0046772 Camellia sinensis var. sinensis HOM05D003935 ORTHO05D005096 1.7e-158 562.8 314 86.6
TAR374G1483 Trochodendron aralioides HOM05D003935 ORTHO05D005096 1.7e-158 562.8 314 85.4
COL.COLO4_12445 Corchorus olitorius HOM05D003935 ORTHO05D005096 2.2e-158 562.4 314 86.6
Dinv16851 Davidia involucrata HOM05D003935 ORTHO05D005096 2.9e-158 562.0 314 86.3
Lalb_Chr19g0126281 Lupinus albus HOM05D003935 ORTHO05D005096 8.5e-158 560.5 314 85.0
Migut.F00500 Erythranthe guttata HOM05D003935 ORTHO05D005096 1.1e-157 560.1 314 84.7
CANSAT21G2109 Cannabis sativa HOM05D003935 ORTHO05D005096 1.4e-157 559.7 314 86.0
Duzib133G0969 Durio zibethinus HOM05D003935 ORTHO05D005096 3.2e-157 558.5 315 86.7
Gohir.D08G159150 Gossypium hirsutum HOM05D003935 ORTHO05D005096 3.2e-157 558.5 315 87.6
Potri.001G126500 Populus trichocarpa HOM05D003935 ORTHO05D005096 5.5e-157 557.8 315 85.7
MSTRG.8834 Avicennia marina HOM05D003935 ORTHO05D005096 7.2e-157 557.4 314 85.0
Gorai.004G165200 Gossypium raimondii HOM05D003935 ORTHO05D005096 7.2e-157 557.4 315 87.3
Lalb_Chr01g0000281 Lupinus albus HOM05D003935 ORTHO05D005096 1.2e-156 556.6 314 85.4
Eucgr.K00175 Eucalyptus grandis HOM05D003935 ORTHO05D005096 1.6e-156 556.2 313 85.3
Hma1.2p1_0432F.1_g151940 Hydrangea macrophylla HOM05D003935 ORTHO05D005096 2.1e-156 555.8 313 85.9
Glyma.09G231000 Glycine max HOM05D003935 ORTHO05D005096 6.1e-156 554.3 313 84.7
Oeu031400.2 Olea europaea HOM05D003935 ORTHO05D005096 6.1e-156 554.3 315 83.8
SGA_v2.0_scaffold44G16558 Striga asiatica HOM05D003935 ORTHO05D005096 7.9e-156 553.9 313 84.3
Hma1.2p1_1132F.1_g260170 Hydrangea macrophylla HOM05D003935 ORTHO05D005096 1.0e-155 553.5 313 85.0
Duzib138G0818 Durio zibethinus HOM05D003935 ORTHO05D005096 1.4e-155 553.1 315 86.3
CSS0045715 Camellia sinensis var. sinensis HOM05D003935 ORTHO05D005096 1.8e-155 552.7 314 85.7
MSTRG.27208 Avicennia marina HOM05D003935 ORTHO05D005096 2.3e-155 552.4 314 84.1
PGR142G1672 Punica granatum HOM05D003935 ORTHO05D005096 2.3e-155 552.4 314 84.4
Gohir.A08G137866 Gossypium hirsutum HOM05D003935 ORTHO05D005096 3.0e-155 552.0 315 86.7
Aqoxy7G00829 Aquilegia oxysepala HOM05D003935 ORTHO05D005096 3.9e-155 551.6 313 83.7
Actinidia01047 Actinidia chinensis HOM05D003935 ORTHO05D005096 5.1e-155 551.2 314 83.8
Gohir.D07G154200 Gossypium hirsutum HOM05D003935 ORTHO05D005096 5.1e-155 551.2 315 85.1
Gorai.001G176400 Gossypium raimondii HOM05D003935 ORTHO05D005096 5.1e-155 551.2 315 85.1
vmacro09915 Vaccinium macrocarpon HOM05D003935 ORTHO05D005096 1.5e-154 549.7 314 84.4
Cfa012922 Carpinus fangiana HOM05D003935 ORTHO05D005096 4.4e-154 548.1 314 83.4
Gohir.A07G148000 Gossypium hirsutum HOM05D003935 ORTHO05D005096 4.4e-154 548.1 315 84.4
Lj3g0013928 Lotus japonicus HOM05D003935 ORTHO05D005096 5.7e-154 547.7 314 83.4
AL8G38190 Arabidopsis lyrata HOM05D003935 ORTHO05D005096 7.4e-154 547.4 314 83.4
AT5G61500 Arabidopsis thaliana HOM05D003935 ORTHO05D005096 7.4e-154 547.4 314 83.4
Rhsim09G0190400 Rhododendron simsii HOM05D003935 ORTHO05D005096 7.4e-154 547.4 329 81.8
CARHR275270 Cardamine hirsuta HOM05D003935 ORTHO05D005096 9.7e-154 547.0 314 83.4
AUR62002246 Chenopodium quinoa HOM05D003935 ORTHO05D005096 9.7e-154 547.0 313 83.4
Glyma.12G005700 Glycine max HOM05D003935 ORTHO05D005096 1.7e-153 546.2 314 84.4
SalBow1G3743 Salvia bowleyana HOM05D003935 ORTHO05D005096 1.7e-153 546.2 314 83.4
Solyc06g034160.3 Solanum lycopersicum HOM05D003935 ORTHO05D005096 1.7e-153 546.2 314 84.4
THA.LOC104801570 Tarenaya hassleriana HOM05D003935 ORTHO05D005096 2.2e-153 545.8 314 83.4
arahy.Tifrunner.gnm1.ann1.YZL4IN Arachis hypogaea HOM05D003935 ORTHO05D005096 2.8e-153 545.4 316 84.5
Carub.0008s2219 Capsella rubella HOM05D003935 ORTHO05D005096 2.8e-153 545.4 314 83.4
Thhalv10004633m.g Eutrema salsugineum HOM05D003935 ORTHO05D005096 3.7e-153 545.0 315 84.1
Potri.003G107000 Populus trichocarpa HOM05D003935 ORTHO05D005096 3.7e-153 545.0 316 84.2
VMungo1127G0071 Vigna mungo HOM05D003935 ORTHO05D005096 3.7e-153 545.0 314 83.4
Atru.chr1.845 Acer truncatum HOM05D003935 ORTHO05D005096 4.8e-153 544.7 313 83.4
CiPaw.14G023500 Carya illinoinensis HOM05D003935 ORTHO05D005096 4.8e-153 544.7 314 84.7
Sopen06g010820 Solanum pennellii HOM05D003935 ORTHO05D005096 4.8e-153 544.7 314 84.1
Sp2g24700 Schrenkiella parvula HOM05D003935 ORTHO05D005096 8.2e-153 543.9 314 83.1
TPR.G3680 Trifolium pratense HOM05D003935 ORTHO05D005096 8.2e-153 543.9 314 83.1
CAN.G330.5 Capsicum annuum HOM05D003935 ORTHO05D005096 1.1e-152 543.5 314 84.1
Medtr4g036265 Medicago truncatula HOM05D003935 ORTHO05D005096 2.4e-152 542.3 314 83.4
Lj1C977G12 Lonicera japonica HOM05D003935 ORTHO05D005096 5.3e-152 541.2 337 78.9
Nitab4.5_0000448g0060 Nicotiana tabacum HOM05D003935 ORTHO05D005096 5.3e-152 541.2 314 84.4
HanXRQChr15g0485951 Helianthus annuus HOM05D003935 ORTHO05D005096 7.0e-152 540.8 314 81.8
Psat7g207040 Pisum sativum HOM05D003935 ORTHO05D005096 9.1e-152 540.4 314 82.5
Sabra01G0097600 Salix brachista HOM05D003935 ORTHO05D005096 9.1e-152 540.4 315 82.2
PGSC0003DMG400021594 Solanum tuberosum HOM05D003935 ORTHO05D005096 9.1e-152 540.4 314 83.1
Aa31LG11G1910 Aethionema arabicum HOM05D003935 ORTHO05D005096 1.2e-151 540.0 310 84.5
THA.LOC104819415 Tarenaya hassleriana HOM05D003935 ORTHO05D005096 1.5e-151 539.7 315 82.5
Cpa.g.sc16.168 Carica papaya HOM05D003935 ORTHO05D005096 2.0e-151 539.3 314 82.5
Prupe.2G123000 Prunus persica HOM05D003935 ORTHO05D005096 2.0e-151 539.3 314 85.0
Phvul.011G006500 Phaseolus vulgaris HOM05D003935 ORTHO05D005096 1.0e-150 537.0 314 82.5
PSO782G0781 Papaver somniferum HOM05D003935 ORTHO05D005096 1.3e-150 536.6 315 82.9
Peaxi162Scf00304g01342 Petunia axillaris HOM05D003935 ORTHO05D005096 3.8e-150 535.0 314 81.8
PSO063G2499 Papaver somniferum HOM05D003935 ORTHO05D005096 5.0e-150 534.6 315 82.5
BcaC06g33155 Brassica carinata HOM05D003935 ORTHO05D005096 1.1e-149 533.5 314 81.8
QL02p025668 Quercus lobata HOM05D003935 ORTHO05D005096 1.4e-149 533.1 314 81.2
FvH4_7g09530 Fragaria vesca HOM05D003935 ORTHO05D005096 9.4e-149 530.4 316 83.2
FAN06G5089 Fragaria x ananassa HOM05D003935 ORTHO05D005096 9.4e-149 530.4 316 83.2
FAN01G1603 Fragaria x ananassa HOM05D003935 ORTHO05D005096 1.2e-148 530.0 316 82.9
Sp6g35250 Schrenkiella parvula HOM05D003935 ORTHO05D005096 1.6e-148 529.6 314 80.9
Cc02_g04470 Coffea canephora HOM05D003935 ORTHO05D005096 2.1e-148 529.3 318 79.6
Thhalv10014155m.g Eutrema salsugineum HOM05D003935 ORTHO05D005096 2.1e-148 529.3 314 80.3
FAN03G1633 Fragaria x ananassa HOM05D003935 ORTHO05D005096 2.1e-148 529.3 316 82.9
MD02G1218100 Malus domestica HOM05D003935 ORTHO05D005096 2.1e-148 529.3 314 84.1
Nitab4.5_0000262g0090 Nicotiana tabacum HOM05D003935 ORTHO05D005096 2.1e-148 529.3 314 83.4
FAN06G4162 Fragaria x ananassa HOM05D003935 ORTHO05D005096 2.7e-148 528.9 316 83.2
FAN10G2569 Fragaria x ananassa HOM05D003935 ORTHO05D005096 2.7e-148 528.9 316 82.9
FAN10G4028 Fragaria x ananassa HOM05D003935 ORTHO05D005096 2.7e-148 528.9 316 82.9
arahy.Tifrunner.gnm1.ann1.2B4GQV Arachis hypogaea HOM05D003935 ORTHO05D005096 3.6e-148 528.5 309 83.5
Lsat_1_v5_gn_5_9340 Lactuca sativa HOM05D003935 ORTHO05D005096 3.6e-148 528.5 314 79.9
Haze_21276 Corylus avellana HOM05D003935 ORTHO05D005096 6.1e-148 527.7 321 80.1
arahy.Tifrunner.gnm1.ann1.16SP4W Arachis hypogaea HOM05D003935 ORTHO05D005096 2.3e-147 525.8 316 81.6
RcHm_v2.0_Chr1g0346321 Rosa chinensis HOM05D003935 ORTHO05D005096 3.9e-147 525.0 316 83.5
Actinidia13591 Actinidia chinensis HOM05D003935 ORTHO05D005096 5.2e-147 524.6 295 85.1
DCAR_020181 Daucus carota HOM05D003935 ORTHO05D005096 5.2e-147 524.6 314 79.6
BolC7t45044H Brassica oleracea HOM05D003935 ORTHO05D005096 8.8e-147 523.9 315 80.6
C07p45210 Brassica napus HOM05D003935 ORTHO05D005096 5.7e-146 521.2 315 80.3
HanXRQChr16g0512861 Helianthus annuus HOM05D003935 ORTHO05D005096 9.7e-146 520.4 314 79.0
unitig_37.g12492 Utricularia gibba HOM05D003935 ORTHO05D005096 2.8e-145 518.8 314 81.5
CDE04G2838 Ceratophyllum demersum HOM05D003935 ORTHO05D005096 3.7e-145 518.5 305 81.6
Sabra03G0073800 Salix brachista HOM05D003935 ORTHO05D005096 8.2e-145 517.3 382 69.9
arahy.Tifrunner.gnm1.ann1.9TCX0P Arachis hypogaea HOM05D003935 ORTHO05D005096 5.3e-144 514.6 309 82.5
Rhsim03G0165100 Rhododendron simsii HOM05D003935 ORTHO05D005096 2.6e-143 512.3 337 75.1
Hund04562 Selenicereus undatus HOM05D003935 ORTHO05D005096 7.7e-143 510.8 310 79.7
BcaB05g21604 Brassica carinata HOM05D003935 ORTHO05D005096 1.5e-141 506.5 316 78.8
EL10Ac3g05885 Beta vulgaris HOM05D003935 ORTHO05D005096 1.6e-140 503.1 285 83.9
BolC2t06285H Brassica oleracea HOM05D003935 ORTHO05D005096 8.0e-140 500.7 317 79.2
Ciclev10005442m.g Citrus clementina HOM05D003935 ORTHO05D005096 5.2e-139 498.0 320 76.9
BcaC03g13194 Brassica carinata HOM05D003935 ORTHO05D005096 2.0e-138 496.1 314 78.7
Mapoly0003s0208 Marchantia polymorpha HOM05D003935 ORTHO05D005096 2.0e-138 496.1 316 76.3
Ah.07g207480 Amaranthus hybridus HOM05D003935 ORTHO05D005096 1.7e-137 493.0 288 82.6
Sc10g0008570 Simmondsia chinensis HOM05D003935 ORTHO05D005096 2.8e-137 492.3 283 83.0
C02p03220 Brassica napus HOM05D004498 ORTHO05D005300 3.7e-137 491.9 309 79.3
Haze_02753 Corylus avellana HOM05D003935 ORTHO05D005096 1.6e-135 486.5 463 58.5
BraA03t13837Z Brassica rapa HOM05D003935 ORTHO05D005096 4.5e-135 485.0 314 76.8
ECA232G4201 Erigeron canadensis HOM05D003935 ORTHO05D005096 4.5e-135 485.0 293 77.5
A03p47100 Brassica napus HOM05D003935 ORTHO05D005096 1.3e-134 483.4 314 76.4
BraA02t04926Z Brassica rapa HOM05D003935 ORTHO05D005096 2.9e-134 482.3 314 77.4
Ca_12623_v3 Cicer arietinum L. HOM05D003935 ORTHO05D005096 6.5e-134 481.1 314 75.8
Nitab4.5_0001267g0110 Nicotiana tabacum HOM05D003935 ORTHO05D005096 1.1e-133 480.3 282 81.9
CiPaw.07G237000 Carya illinoinensis HOM05D003935 ORTHO05D005096 3.6e-132 475.3 328 72.0
Aa31LG3G18800 Aethionema arabicum HOM05D003935 ORTHO05D005096 6.1e-132 474.6 313 76.4
Pp3c8_11900 Physcomitrium patens HOM05D003935 ORTHO05D005096 2.6e-130 469.2 311 74.0
Lsat_1_v5_gn_9_51820 Lactuca sativa HOM05D003935 ORTHO05D005096 1.3e-126 456.8 311 73.6
Os01g0200000 Oryza sativa ssp. japonica HOM05D003935 ORTHO05D005096 1.5e-125 453.4 316 71.2
SMO134G0003 Selaginella moellendorffii HOM05D003935 ORTHO05D005096 4.4e-122 441.8 311 68.5
ATR0057G070 Amborella trichopoda HOM05D003935 ORTHO05D005096 1.2e-119 433.7 284 74.3
Zm00001eb391210 Zea mays HOM05D003935 ORTHO05D005096 1.6e-119 433.3 314 69.4
BcaC06g33158 Brassica carinata HOM05D003935 ORTHO05D005096 6.1e-116 421.4 261 78.9
Actinidia24986 Actinidia chinensis HOM05D003935 ORTHO05D005096 1.8e-115 419.9 240 83.3
AUR62015457 Chenopodium quinoa HOM05D003935 ORTHO05D005096 1.4e-96 357.1 213 79.3
MD07G1099100 Malus domestica HOM05D003935 ORTHO05D005096 6.9e-83 311.6 192 80.2
CBR_g28076 Chara braunii HOM05D003935 ORTHO05D000002 5.4e-80 302.0 250 59.2
Dinv06578 Davidia involucrata HOM05D003935 ORTHO05D005096 1.0e-78 297.7 171 81.9
Nitab4.5_0001358g0020 Nicotiana tabacum HOM05D003935 ORTHO05D005096 5.6e-77 292.0 171 79.5
Cre02.g102350 Chlamydomonas reinhardtii HOM05D003935 ORTHO05D005096 1.6e-76 290.4 314 50.6
MCO14G260 Micromonas commoda HOM05D003935 ORTHO05D005096 4.0e-75 285.8 315 48.9
AagrBONN_evm.TU.Sc2ySwM_369.216 Anthoceros agrestis HOM05D003935 ORTHO05D005096 1.4e-72 277.3 273 54.2
arahy.Tifrunner.gnm1.ann1.VY970J Arachis hypogaea HOM05D003935 ORTHO05D005096 1.1e-69 267.7 162 79.6
Nn051s41922 Nelumbo nucifera HOM05D003935 ORTHO05D005096 1.7e-65 253.8 151 76.8
Nn1g09078 Nelumbo nucifera HOM05D003935 ORTHO05D005096 1.7e-65 253.8 151 76.8
CsaV3_4G004080 Cucumis sativus L. HOM05D003935 ORTHO05D044846 5.7e-61 238.8 277 47.7
PRCOL_00004022 Prasinoderma coloniale HOM05D003935 ORTHO05D005096 5.7e-61 238.8 300 43.7
SEGI_20183 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 2.1e-60 236.9 189 59.8
arahy.Tifrunner.gnm1.ann1.XHAQ77 Arachis hypogaea HOM05D003935 ORTHO05D005096 1.4e-59 234.2 182 65.9
Haze_27326 Corylus avellana HOM05D003935 ORTHO05D005096 6.5e-57 225.3 305 41.6
Nitab4.5_0001358g0040 Nicotiana tabacum HOM05D003935 ORTHO05D001473 2.5e-56 223.4 112 93.8
Os10g0560450 Oryza sativa ssp. japonica HOM05D003935 ORTHO05D005096 2.7e-55 219.9 182 61.5
MELO3C032833.2 Cucumis melo HOM05D003935 ORTHO05D044846 1.3e-49 201.1 301 42.2
Zm00001eb216570 Zea mays HOM05D003935 ORTHO05D005096 1.0e-46 191.4 129 71.3
Zm00001eb363440 Zea mays HOM05D003935 ORTHO05D005096 6.7e-46 188.7 113 77.9
Zm00001eb003720 Zea mays HOM05D003935 ORTHO05D005096 2.5e-45 186.8 113 77.0
Zm00001eb078430 Zea mays HOM05D003935 ORTHO05D005096 2.5e-45 186.8 113 77.0
BcaB05g21605 Brassica carinata HOM05D003935 ORTHO05D005096 2.2e-44 183.7 136 68.4
Rhsim01G0073400 Rhododendron simsii HOM05D003935 ORTHO05D005096 4.8e-44 182.6 149 63.1
SEGI_13739 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 6.9e-43 178.7 99 84.8
Rhsim06G0236800 Rhododendron simsii HOM05D003935 ORTHO05D005096 2.6e-42 176.8 142 62.7
Rhsim11G0131000 Rhododendron simsii HOM05D003935 ORTHO05D005096 7.9e-39 165.2 179 52.0
AL7G47000 Arabidopsis lyrata HOM05D003935 ORTHO05D003430 1.5e-37 161.0 169 51.5
Lj2A404G32 Lonicera japonica HOM05D000092 ORTHO05D000042 2.0e-37 160.6 277 36.1
BcaB01g00746 Brassica carinata HOM05D003935 ORTHO05D005096 1.2e-31 141.4 108 66.7
Rhsim06G0096100 Rhododendron simsii HOM05D003935 ORTHO05D005096 1.5e-29 134.4 116 58.6
BcaC04g19029 Brassica carinata HOM05D003935 ORTHO05D005096 2.4e-27 127.1 114 58.8
SEGI_32586 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 1.0e-25 121.7 68 83.8
A09p20840 Brassica napus HOM05D000772 ORTHO05D003239 6.5e-25 119.0 80 75.0
BraA09t37687Z Brassica rapa HOM05D000772 ORTHO05D003239 6.5e-25 119.0 80 75.0
MD07G1099000 Malus domestica HOM05D003935 ORTHO05D005096 2.1e-23 114.0 58 89.7
CBR_g28077 Chara braunii HOM05D003935 ORTHO05D005096 1.0e-22 111.7 72 69.4
arahy.Tifrunner.gnm1.ann1.W2J7UU Arachis hypogaea HOM05D003935 ORTHO05D023770 6.3e-20 102.4 53 92.5
Lj9A23G20 Lonicera japonica HOM05D000092 ORTHO05D000042 3.1e-19 100.1 117 45.3
C03p26610 Brassica napus HOM05D003935 ORTHO05D023770 3.5e-18 96.7 53 84.9
SalBow2G0135 Salvia bowleyana HOM05D003935 ORTHO05D357983 1.1e-16 91.7 47 89.4
Actinidia10778 Actinidia chinensis HOM05D003935 ORTHO05D005096 7.2e-16 89.0 89 55.1
Zm00001eb269920 Zea mays HOM05D001580 ORTHO05D001517 1.2e-15 88.2 52 82.7
Rhsim12G0075300 Rhododendron simsii HOM05D016728 ORTHO05D338590 2.0e-13 80.9 101 49.5
BcaC03g17887 Brassica carinata HOM05D003935 ORTHO05D005096 1.3e-09 68.2 44 72.7
Zm00001eb395010 Zea mays HOM05D034860 ORTHO05D442630 2.8e-07 60.5 37 62.2
BcaC02g10492 Brassica carinata HOM05D036142 ORTHO05D023770 1.8e-06 57.8 33 81.8
C04p28240 Brassica napus HOM05D036142 ORTHO05D023770 1.8e-06 57.8 33 81.8
BolC4t24369H Brassica oleracea HOM05D036142 ORTHO05D023770 1.8e-06 57.8 33 81.8
Zm00001eb363380 Zea mays HOM05D003935 ORTHO05D445556 2.3e-06 57.4 37 59.5


User provided reference genes

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