Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0016080 Sechium edule HOM05D000120 ORTHO05D009410 1.5e-156 556.2 287 100.0
Sed0018675 Sechium edule HOM05D000120 ORTHO05D009410 1.8e-82 310.1 290 64.1
MELO3C002789.2 Cucumis melo HOM05D000120 ORTHO05D009410 1.4e-74 283.9 292 58.2
CsaV3_7G000360 Cucumis sativus L. HOM05D000120 ORTHO05D009410 4.2e-71 272.3 293 57.0
ClCG02G004590 Citrullus lanatus HOM05D000120 ORTHO05D009410 6.3e-67 258.5 292 52.7
Dinv23458 Davidia involucrata HOM05D000120 ORTHO05D009410 4.7e-30 136.0 287 36.2
Sabra09G0095200 Salix brachista HOM05D000120 ORTHO05D009410 6.1e-30 135.6 291 37.8
GSVIVG01024178001 Vitis vinifera HOM05D000120 ORTHO05D009410 9.8e-28 128.3 282 35.5
Potri.009G124000 Populus trichocarpa HOM05D000120 ORTHO05D009410 2.2e-27 127.1 293 34.8
Haze_02260 Corylus avellana HOM05D000120 ORTHO05D009410 5.4e-26 122.5 265 34.3
RcHm_v2.0_Chr6g0267851 Rosa chinensis HOM05D000120 ORTHO05D009410 2.0e-25 120.6 286 33.2
TWI79G0897 Tripterygium wilfordii HOM05D000120 ORTHO05D009410 3.8e-24 116.3 275 35.3
TWI31G0702 Tripterygium wilfordii HOM05D000120 ORTHO05D009410 5.0e-24 115.9 269 35.3
Cfa005100 Carpinus fangiana HOM05D000722 ORTHO05D000590 8.6e-24 115.2 270 33.3
Manes.11G082300 Manihot esculenta HOM05D000120 ORTHO05D009410 2.5e-23 113.6 295 31.9
MD10G1063700 Malus domestica HOM05D000120 ORTHO05D009410 2.1e-22 110.5 274 32.8
Manes.04G083900 Manihot esculenta HOM05D000120 ORTHO05D009410 1.4e-21 107.8 285 30.2
Thecc.02G075700 Theobroma cacao HOM05D000120 ORTHO05D009410 1.4e-21 107.8 269 33.5
MD00G1040100 Malus domestica HOM05D000120 ORTHO05D009410 4.0e-21 106.3 292 32.5
QL11p046369 Quercus lobata HOM05D000120 ORTHO05D009410 1.2e-20 104.8 362 30.4
Oeu055633.1 Olea europaea HOM05D000120 ORTHO05D009410 4.4e-20 102.8 289 30.4
Ciclev10029808m.g Citrus clementina HOM05D000120 ORTHO05D009410 9.8e-20 101.7 292 31.2
Lj3g0001494 Lotus japonicus HOM05D000120 ORTHO05D009410 1.7e-19 100.9 269 29.4
Potri.004G162300 Populus trichocarpa HOM05D000120 ORTHO05D009410 3.7e-19 99.8 288 31.9
VMungo1127G0720 Vigna mungo HOM05D000120 ORTHO05D009410 8.3e-19 98.6 272 27.9
Duzib248G0587 Durio zibethinus HOM05D000120 ORTHO05D009410 1.4e-18 97.8 289 30.1
FvH4_2g10380 Fragaria vesca HOM05D000120 ORTHO05D009410 1.4e-18 97.8 267 30.7
CANSAT11G1664 Cannabis sativa HOM05D000120 ORTHO05D009410 1.8e-18 97.4 289 31.8
FAN20G2164 Fragaria x ananassa HOM05D000120 ORTHO05D009410 1.8e-18 97.4 267 31.5
Lalb_Chr03g0030591 Lupinus albus HOM05D000120 ORTHO05D009410 2.4e-18 97.1 282 32.6
FAN24G2037 Fragaria x ananassa HOM05D000120 ORTHO05D009410 7.0e-18 95.5 267 30.3
Glyma.06G246300 Glycine max HOM05D000120 ORTHO05D009410 1.6e-17 94.4 272 32.0
Prupe.8G085200 Prunus persica HOM05D000120 ORTHO05D009410 5.9e-17 92.4 267 30.0
Eucgr.G01727 Eucalyptus grandis HOM05D000120 ORTHO05D009410 1.3e-16 91.3 285 27.4
Gorai.008G031900 Gossypium raimondii HOM05D000120 ORTHO05D009410 1.3e-16 91.3 322 27.0
Gohir.A12G041200 Gossypium hirsutum HOM05D000120 ORTHO05D009410 1.7e-16 90.9 319 27.9
COL.COLO4_26040 Corchorus olitorius HOM05D000120 ORTHO05D009410 2.3e-16 90.5 274 28.8
vmacro02052 Vaccinium macrocarpon HOM05D000120 ORTHO05D009410 2.9e-16 90.1 288 29.2
Actinidia02243 Actinidia chinensis HOM05D000120 ORTHO05D009410 5.0e-16 89.4 264 31.1
Ca_27169_v3 Cicer arietinum L. HOM05D000120 ORTHO05D009410 1.5e-15 87.8 270 29.6
MSTRG.5421 Avicennia marina HOM05D000120 ORTHO05D009410 1.9e-15 87.4 269 27.9
Atru.chr5.3139 Acer truncatum HOM05D000120 ORTHO05D009410 3.3e-15 86.7 279 29.4
CiPaw.06G128400 Carya illinoinensis HOM05D000120 ORTHO05D009410 7.3e-15 85.5 338 29.6
FAN27G2529 Fragaria x ananassa HOM05D000120 ORTHO05D009410 1.6e-14 84.3 227 31.7
Peaxi162Scf00016g10015 Petunia axillaris HOM05D000120 ORTHO05D009410 1.6e-14 84.3 286 30.1
Sc08g0000840 Simmondsia chinensis HOM05D000120 ORTHO05D009410 3.6e-14 83.2 269 26.8
Hma1.2p1_1244F.1_g270010 Hydrangea macrophylla HOM05D000120 ORTHO05D009410 6.1e-14 82.4 287 28.9
Duzib132G0615 Durio zibethinus HOM05D000120 ORTHO05D009410 1.4e-13 81.3 269 28.6
Phvul.011G156600 Phaseolus vulgaris HOM05D000120 ORTHO05D009410 1.4e-13 81.3 270 27.4
AUR62010396 Chenopodium quinoa HOM05D000120 ORTHO05D009410 3.1e-13 80.1 266 28.2
Sopen01g052500 Solanum pennellii HOM05D000120 ORTHO05D009410 3.1e-13 80.1 268 29.1
Nitab4.5_0017990g0010 Nicotiana tabacum HOM05D000120 ORTHO05D009410 4.0e-13 79.7 263 29.7
TAR628G1238 Trochodendron aralioides HOM05D000120 ORTHO05D009410 4.0e-13 79.7 279 30.5
PGSC0003DMG400046163 Solanum tuberosum HOM05D000120 ORTHO05D009410 5.2e-13 79.3 266 29.3
SalBow6G2916 Salvia bowleyana HOM05D000120 ORTHO05D009410 1.2e-12 78.2 288 28.1
arahy.Tifrunner.gnm1.ann1.X3J0BR Arachis hypogaea HOM05D000120 ORTHO05D009410 1.5e-12 77.8 280 27.9
Cpa.g.sc150.20 Carica papaya HOM05D000120 ORTHO05D009410 1.5e-12 77.8 284 28.9
AUR62016822 Chenopodium quinoa HOM05D000120 ORTHO05D009410 1.5e-12 77.8 266 27.8
Solyc01g110350.2 Solanum lycopersicum HOM05D000120 ORTHO05D009410 2.0e-12 77.4 266 28.6
Gohir.D12G031200 Gossypium hirsutum HOM05D000120 ORTHO05D009410 3.4e-12 76.6 276 26.4
PGR042G1442 Punica granatum HOM05D000120 ORTHO05D009410 5.8e-12 75.9 293 27.6
TAR376G0786 Trochodendron aralioides HOM05D000120 ORTHO05D009410 7.5e-12 75.5 265 28.7
TPR.G31517 Trifolium pratense HOM05D000120 ORTHO05D009410 9.8e-12 75.1 284 29.9
Aa31LG6G16270 Aethionema arabicum HOM05D011065 ORTHO05D009410 1.3e-11 74.7 259 27.4
Lsat_1_v5_gn_3_44160 Lactuca sativa HOM05D000120 ORTHO05D009410 3.7e-11 73.2 277 27.8
Nn7g36692 Nelumbo nucifera HOM05D000120 ORTHO05D009410 2.4e-10 70.5 254 28.0
Duzib052G0028 Durio zibethinus HOM05D000120 ORTHO05D009410 5.4e-10 69.3 272 28.3
PSO210G7327 Papaver somniferum HOM05D000120 ORTHO05D009410 5.4e-10 69.3 281 26.3
SGA_v2.0_scaffold32G13221 Striga asiatica HOM05D000120 ORTHO05D009410 1.2e-09 68.2 118 39.8
CAN.G170.96 Capsicum annuum HOM05D000120 ORTHO05D009410 2.7e-09 67.0 264 29.2
AT4G38980 Arabidopsis thaliana HOM05D011065 ORTHO05D009410 7.8e-09 65.5 281 27.8
Cc02_g16960 Coffea canephora HOM05D000120 ORTHO05D009410 1.7e-08 64.3 292 26.7
AL7G10880 Arabidopsis lyrata HOM05D011065 ORTHO05D009410 2.3e-08 63.9 281 27.4
ECA240G4650 Erigeron canadensis HOM05D000120 ORTHO05D009410 2.3e-08 63.9 275 27.6
Hund00217 Selenicereus undatus HOM05D000120 ORTHO05D000105 2.3e-08 63.9 266 27.8
HanXRQChr15g0478301 Helianthus annuus HOM05D000120 ORTHO05D009410 3.0e-08 63.5 260 26.5
BcaC01g00270 Brassica carinata HOM05D011065 ORTHO05D009410 1.1e-07 61.6 282 24.8
C03p77470 Brassica napus HOM05D011065 ORTHO05D009410 1.1e-07 61.6 282 24.8
BolC3t20002H Brassica oleracea HOM05D011065 ORTHO05D009410 1.1e-07 61.6 282 24.8
BraA08t34348Z Brassica rapa HOM05D011065 ORTHO05D009410 1.1e-07 61.6 284 28.2
BcaB03g12236 Brassica carinata HOM05D011065 ORTHO05D009410 1.5e-07 61.2 291 25.4
Thhalv10027283m.g Eutrema salsugineum HOM05D011065 ORTHO05D009410 4.3e-07 59.7 278 25.9
unitig_747.g21207 Utricularia gibba HOM05D000120 ORTHO05D009410 4.3e-07 59.7 254 26.0
Sp7g36860 Schrenkiella parvula HOM05D011065 ORTHO05D009410 7.3e-07 58.9 289 27.7
Aqoxy5G01485 Aquilegia oxysepala HOM05D000120 ORTHO05D009410 2.8e-06 57.0 286 26.2
Carub.0007s0080 Capsella rubella HOM05D011065 ORTHO05D009410 3.6e-06 56.6 288 27.4
A08p23900 Brassica napus HOM05D011065 ORTHO05D009410 4.7e-06 56.2 276 27.2


User provided reference genes

Program Settings