Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0016049 Sechium edule HOM05D005586 ORTHO05D007044 0.0e+00 1235.7 647 100.0
Sed0005590 Sechium edule HOM05D005586 ORTHO05D007044 0.0e+00 1144.8 647 92.1
ClCG06G013320 Citrullus lanatus HOM05D005586 ORTHO05D007044 0.0e+00 1142.9 648 91.8
MELO3C017465.2 Cucumis melo HOM05D005586 ORTHO05D007044 0.0e+00 1137.9 648 91.4
CsaV3_1G031580 Cucumis sativus L. HOM05D005586 ORTHO05D007044 0.0e+00 1137.9 648 91.7
TWI60G0698 Tripterygium wilfordii HOM05D005586 ORTHO05D007044 2.4e-276 955.3 655 75.6
Prupe.2G007900 Prunus persica HOM05D005586 ORTHO05D007044 1.6e-272 942.6 657 74.0
Atru.chr7.639 Acer truncatum HOM05D005586 ORTHO05D007044 1.8e-271 939.1 652 74.8
Lalb_Chr12g0199381 Lupinus albus HOM05D005586 ORTHO05D007044 4.0e-271 937.9 648 75.8
RcHm_v2.0_Chr4g0402481 Rosa chinensis HOM05D005586 ORTHO05D007044 4.9e-269 931.0 649 74.4
FAN18G4074 Fragaria x ananassa HOM05D005586 ORTHO05D007044 9.2e-268 926.8 651 73.7
Potri.006G168200 Populus trichocarpa HOM05D005586 ORTHO05D007044 1.2e-267 926.4 662 73.7
FvH4_5g27790 Fragaria vesca HOM05D005586 ORTHO05D007044 2.1e-267 925.6 651 73.6
FAN08G2362 Fragaria x ananassa HOM05D005586 ORTHO05D007044 2.1e-267 925.6 650 74.0
Ciclev10007551m.g Citrus clementina HOM05D005586 ORTHO05D007044 1.3e-266 922.9 653 73.7
COL.COLO4_33680 Corchorus olitorius HOM05D005586 ORTHO05D007044 1.1e-265 919.8 650 73.5
arahy.Tifrunner.gnm1.ann1.F5X18S Arachis hypogaea HOM05D005586 ORTHO05D007044 2.5e-265 918.7 648 74.4
CANSAT11G2700 Cannabis sativa HOM05D005586 ORTHO05D007044 9.5e-265 916.8 650 72.6
Duzib168G0896 Durio zibethinus HOM05D005586 ORTHO05D007044 1.4e-263 912.9 652 73.3
Glyma.20G083600 Glycine max HOM05D005586 ORTHO05D007044 2.4e-263 912.1 648 73.3
Dinv41251 Davidia involucrata HOM05D005586 ORTHO05D007044 5.2e-263 911.0 638 76.0
Lj4g0013239 Lotus japonicus HOM05D005586 ORTHO05D007044 6.8e-263 910.6 648 73.5
Glyma.17G063500 Glycine max HOM05D005586 ORTHO05D007044 8.9e-263 910.2 648 72.8
Sabra06G0129800 Salix brachista HOM05D005586 ORTHO05D007044 1.5e-262 909.4 662 73.0
Ca_21173_v3 Cicer arietinum L. HOM05D005586 ORTHO05D007044 2.0e-262 909.1 648 73.5
Ca_21222_v3 Cicer arietinum L. HOM05D005586 ORTHO05D007044 2.0e-262 909.1 648 73.5
Aqoxy7G02326 Aquilegia oxysepala HOM05D005586 ORTHO05D007044 2.6e-262 908.7 650 73.2
QL02p097708 Quercus lobata HOM05D005586 ORTHO05D007044 5.8e-262 907.5 652 73.0
TAR383G0761 Trochodendron aralioides HOM05D005586 ORTHO05D007044 5.8e-262 907.5 649 73.2
Phvul.003G146100 Phaseolus vulgaris HOM05D005586 ORTHO05D007044 2.2e-261 905.6 648 73.6
Cpa.g.sc95.50 Carica papaya HOM05D005586 ORTHO05D007044 2.9e-261 905.2 632 75.3
Lj9P685T24 Lonicera japonica HOM05D005586 ORTHO05D007044 3.8e-261 904.8 648 72.4
Gorai.004G099900 Gossypium raimondii HOM05D005586 ORTHO05D007044 1.4e-260 902.9 652 72.5
DCAR_017968 Daucus carota HOM05D005586 ORTHO05D007044 2.4e-260 902.1 648 73.0
Haze_22099 Corylus avellana HOM05D005586 ORTHO05D007044 4.1e-260 901.4 651 72.0
Dinv25464 Davidia involucrata HOM05D005586 ORTHO05D007044 4.1e-260 901.4 645 73.8
TAR626G0800 Trochodendron aralioides HOM05D005586 ORTHO05D007044 7.1e-260 900.6 649 72.1
Gohir.A08G084500 Gossypium hirsutum HOM05D005586 ORTHO05D007044 2.1e-259 899.0 652 72.1
CSS0030464 Camellia sinensis var. sinensis HOM05D005586 ORTHO05D007044 6.0e-259 897.5 646 73.8
THA.LOC104811789 Tarenaya hassleriana HOM05D005586 ORTHO05D007044 1.0e-258 896.7 654 71.3
Cfa013507 Carpinus fangiana HOM05D005586 ORTHO05D007044 1.3e-258 896.3 653 71.7
CiPaw.07G192200 Carya illinoinensis HOM05D005586 ORTHO05D007044 1.7e-258 896.0 653 72.1
Medtr4g128210 Medicago truncatula HOM05D005586 ORTHO05D007044 5.1e-258 894.4 648 72.4
PGR102G3328 Punica granatum HOM05D005586 ORTHO05D007044 9.6e-257 890.2 649 72.0
Aa31LG3G13340 Aethionema arabicum HOM05D005586 ORTHO05D007044 2.1e-256 889.0 657 70.9
Eucgr.C02307 Eucalyptus grandis HOM05D005586 ORTHO05D007044 2.1e-256 889.0 656 72.1
VMungo1215G0758 Vigna mungo HOM05D005586 ORTHO05D007044 2.8e-256 888.6 634 74.3
Rhsim07G0149700 Rhododendron simsii HOM05D005586 ORTHO05D007044 3.6e-256 888.3 642 72.4
MD13G1254800 Malus domestica HOM05D005586 ORTHO05D007044 1.4e-255 886.3 641 73.0
Manes.14G153700 Manihot esculenta HOM05D005586 ORTHO05D007044 6.9e-255 884.0 641 73.2
Psat0s509g0200 Pisum sativum HOM05D005586 ORTHO05D007044 6.9e-255 884.0 649 71.0
AL8G33420 Arabidopsis lyrata HOM05D005586 ORTHO05D007044 3.4e-254 881.7 660 70.5
Cc06_g13260 Coffea canephora HOM05D005586 ORTHO05D007044 7.6e-254 880.6 649 72.7
Thecc.09G173100 Theobroma cacao HOM05D005586 ORTHO05D007044 3.8e-253 878.2 632 74.2
BcaB01g04458 Brassica carinata HOM05D005586 ORTHO05D007044 5.4e-252 874.4 655 70.2
AT5G57460 Arabidopsis thaliana HOM05D005586 ORTHO05D007044 9.3e-252 873.6 664 69.3
CSS0000496 Camellia sinensis var. sinensis HOM05D005586 ORTHO05D007044 1.2e-251 873.2 646 72.4
A03p12820 Brassica napus HOM05D005586 ORTHO05D007044 2.7e-251 872.1 656 70.4
BraA03t10590Z Brassica rapa HOM05D005586 ORTHO05D007044 4.6e-251 871.3 655 70.4
PSO170G6484 Papaver somniferum HOM05D005586 ORTHO05D007044 7.8e-251 870.5 649 70.4
CARHR271250 Cardamine hirsuta HOM05D005586 ORTHO05D007044 1.7e-250 869.4 667 68.7
C03p14980 Brassica napus HOM05D005586 ORTHO05D007044 2.3e-250 869.0 658 70.1
BolC3t13940H Brassica oleracea HOM05D005586 ORTHO05D007044 2.3e-250 869.0 657 70.0
BcaB08g36100 Brassica carinata HOM05D005586 ORTHO05D007044 6.6e-250 867.5 656 70.4
BcaC01g06487 Brassica carinata HOM05D005586 ORTHO05D007044 8.7e-250 867.1 655 70.2
Sp6g19170 Schrenkiella parvula HOM05D005586 ORTHO05D007044 5.6e-249 864.4 655 69.2
PSO063G4043 Papaver somniferum HOM05D005586 ORTHO05D007044 1.1e-247 860.1 649 69.6
Carub.0008s1797 Capsella rubella HOM05D005586 ORTHO05D007044 1.4e-247 859.8 660 69.1
Nitab4.5_0000730g0080 Nicotiana tabacum HOM05D005586 ORTHO05D007044 2.4e-247 859.0 654 69.4
Thhalv10015707m.g Eutrema salsugineum HOM05D005586 ORTHO05D007044 4.0e-247 858.2 657 68.6
Peaxi162Scf00231g00064 Petunia axillaris HOM05D005586 ORTHO05D007044 6.9e-247 857.4 654 69.3
C09p49310 Brassica napus HOM05D005586 ORTHO05D007044 9.0e-247 857.1 663 69.1
Aa31LG3G220 Aethionema arabicum HOM05D005586 ORTHO05D007044 1.5e-246 856.3 656 68.9
Ah.14g083790 Amaranthus hybridus HOM05D005586 ORTHO05D007044 2.0e-246 855.9 648 69.6
BcaC04g19966 Brassica carinata HOM05D005586 ORTHO05D007044 2.0e-246 855.9 665 68.9
Sc08g0005320 Simmondsia chinensis HOM05D005586 ORTHO05D007044 2.0e-246 855.9 649 70.9
Nn4g25000 Nelumbo nucifera HOM05D005586 ORTHO05D007044 3.4e-246 855.1 629 72.3
Solyc10g078790.1 Solanum lycopersicum HOM05D005586 ORTHO05D007044 3.4e-246 855.1 652 69.2
Sopen10g029410 Solanum pennellii HOM05D005586 ORTHO05D007044 3.4e-246 855.1 652 69.2
PGSC0003DMG400011415 Solanum tuberosum HOM05D005586 ORTHO05D007044 4.5e-246 854.7 652 69.2
BraA10t43568Z Brassica rapa HOM05D005586 ORTHO05D007044 9.9e-246 853.6 657 68.9
Lj7P472T26 Lonicera japonica HOM05D005586 ORTHO05D007044 9.9e-246 853.6 648 69.0
ECA234G4574 Erigeron canadensis HOM05D005586 ORTHO05D007044 1.7e-245 852.8 648 71.1
Hma1.2p1_1025F.1_g249260 Hydrangea macrophylla HOM05D005586 ORTHO05D007044 6.4e-245 850.9 607 73.3
MSTRG.6212 Avicennia marina HOM05D005586 ORTHO05D007044 8.4e-245 850.5 649 68.7
A10p14890 Brassica napus HOM05D005586 ORTHO05D007044 8.4e-245 850.5 657 69.1
CAN.G1161.32 Capsicum annuum HOM05D005586 ORTHO05D007044 1.9e-241 839.3 654 67.9
Nitab4.5_0004134g0010 Nicotiana tabacum HOM05D005586 ORTHO05D007044 9.6e-241 837.0 651 68.8
EL10Ac8g18286 Beta vulgaris HOM05D005586 ORTHO05D007044 8.1e-240 833.9 654 68.2
Oeu025223.1 Olea europaea HOM05D005586 ORTHO05D007044 1.4e-239 833.2 649 68.3
Lsat_1_v5_gn_5_84680 Lactuca sativa HOM05D005586 ORTHO05D007044 1.8e-239 832.8 652 68.7
SHI41749 Sapria himalayana HOM05D005586 ORTHO05D007044 3.1e-239 832.0 654 67.9
Nitab4.5_0000455g0040 Nicotiana tabacum HOM05D005586 ORTHO05D007044 9.0e-239 830.5 643 69.2
BolC9t57782H Brassica oleracea HOM05D005586 ORTHO05D007044 1.5e-238 829.7 663 67.7
TPR.G5407 Trifolium pratense HOM05D005586 ORTHO05D007044 2.9e-237 825.5 598 71.9
Gohir.D08G094100 Gossypium hirsutum HOM05D005586 ORTHO05D007044 3.8e-237 825.1 652 67.9
Migut.J01477 Erythranthe guttata HOM05D005586 ORTHO05D007044 4.9e-237 824.7 650 66.3
Oeu009835.1 Olea europaea HOM05D005586 ORTHO05D007044 6.4e-237 824.3 657 67.7
GSVIVG01029208001 Vitis vinifera HOM05D005586 ORTHO05D007044 9.3e-236 820.5 650 68.5
SGA_v2.0_scaffold17G07909 Striga asiatica HOM05D005586 ORTHO05D007044 2.7e-235 818.9 641 68.0
MBI03_g13495_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 6.7e-234 814.3 653 65.8
MD13G1254300 Malus domestica HOM05D005586 ORTHO05D007044 2.5e-228 795.8 646 67.3
CDE04G2484 Ceratophyllum demersum HOM05D005586 ORTHO05D007044 2.3e-226 789.3 643 65.2
PSO541G5977 Papaver somniferum HOM05D005586 ORTHO05D007044 1.4e-223 780.0 653 63.7
AUR62021301 Chenopodium quinoa HOM05D005586 ORTHO05D007044 4.3e-217 758.4 655 63.4
AUR62033219 Chenopodium quinoa HOM05D005586 ORTHO05D007044 1.7e-216 756.5 655 63.1
MBI14_g17367_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 6.9e-215 751.1 650 61.4
ATR0618G120 Amborella trichopoda HOM05D005586 ORTHO05D007044 5.7e-209 731.5 650 60.6
Actinidia15717 Actinidia chinensis HOM05D005586 ORTHO05D007044 8.2e-208 727.6 630 64.3
SalBow1G5715 Salvia bowleyana HOM05D005586 ORTHO05D007044 4.5e-206 721.8 651 61.9
Actinidia14649 Actinidia chinensis HOM05D005586 ORTHO05D007044 3.3e-201 705.7 545 70.6
SalBow6G0691 Salvia bowleyana HOM05D005586 ORTHO05D007044 1.4e-199 700.3 649 59.0
SEGI_38070 Sequoiadendron giganteum HOM05D005586 ORTHO05D007044 2.0e-198 696.4 653 57.7
MBI18_g04576_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 9.4e-196 687.6 639 60.6
Hma1.2p1_3184F.1_g333760 Hydrangea macrophylla HOM05D005586 ORTHO05D007044 1.5e-193 680.2 642 59.8
Zm00001eb414690 Zea mays HOM05D005586 ORTHO05D007044 1.7e-189 666.8 655 56.5
Os08g0243900 Oryza sativa ssp. japonica HOM05D005586 ORTHO05D007044 4.2e-188 662.1 654 56.7
BcaC01g06491 Brassica carinata HOM05D005586 ORTHO05D007044 1.2e-179 634.0 628 58.0
CDE02G2425 Ceratophyllum demersum HOM05D005586 ORTHO05D007044 1.3e-173 614.0 648 53.5
MBI16_g35931_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 4.9e-160 568.9 549 58.3
Mapoly0111s0055 Marchantia polymorpha HOM05D005586 ORTHO05D007044 1.2e-153 547.7 668 49.0
BcaC01g06494 Brassica carinata HOM05D005586 ORTHO05D007044 1.7e-152 543.9 635 52.1
Pp3c25_4850 Physcomitrium patens HOM05D005586 ORTHO05D007044 3.5e-142 509.6 668 44.2
AagrBONN_evm.TU.Sc2ySwM_368.670 Anthoceros agrestis HOM05D005586 ORTHO05D007044 7.1e-127 458.8 673 42.3
COL.COLO4_04392 Corchorus olitorius HOM05D005586 ORTHO05D007044 4.6e-118 429.5 351 65.5
unitig_899.g14852 Utricularia gibba HOM05D005586 ORTHO05D007044 1.9e-111 407.5 345 65.2
SMO228G0090 Selaginella moellendorffii HOM05D005586 ORTHO05D007044 3.6e-94 350.1 398 50.0
unitig_899.g14851 Utricularia gibba HOM05D005586 ORTHO05D007044 1.1e-92 345.1 244 69.7
HPP92_000781 Vanilla planifolia HOM05D005586 ORTHO05D007044 4.4e-68 263.5 298 52.0
QL11p053068 Quercus lobata HOM05D005586 ORTHO05D007044 2.3e-45 188.0 118 84.7
CBR_g26159 Chara braunii HOM05D005586 ORTHO05D000002 1.8e-37 161.8 566 27.0
MD16G1258000 Malus domestica HOM05D005586 ORTHO05D007044 5.2e-37 160.2 112 69.6
MD16G1258100 Malus domestica HOM05D005586 ORTHO05D007044 8.9e-29 132.9 116 64.7
Oeu013635.1 Olea europaea HOM05D006172 ORTHO05D005515 2.4e-13 81.6 95 50.5
MBI16_g35933_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009834 1.6e-09 68.9 44 75.0
CBR_g26157 Chara braunii HOM05D005586 ORTHO05D007044 3.5e-09 67.8 89 41.6
CDE04G1231 Ceratophyllum demersum HOM05D005586 ORTHO05D007044 2.5e-07 61.6 49 63.3
SalBow4G0612 Salvia bowleyana HOM05D005586 ORTHO05D360416 8.1e-06 56.6 47 59.6


User provided reference genes

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