Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0016034 Sechium edule HOM05D002335 ORTHO05D006282 1.6e-189 666.0 359 100.0
ClCG03G015070 Citrullus lanatus HOM05D002335 ORTHO05D006282 1.1e-177 626.7 355 94.4
MELO3C015522.2 Cucumis melo HOM05D002335 ORTHO05D006282 6.2e-157 557.8 356 86.0
CsaV3_1G041060 Cucumis sativus L. HOM05D002335 ORTHO05D006282 1.2e-155 553.5 355 85.4
Cfa002987 Carpinus fangiana HOM05D002335 ORTHO05D006282 2.6e-147 525.8 356 78.1
CiPaw.04G143000 Carya illinoinensis HOM05D002335 ORTHO05D006282 2.2e-146 522.7 349 78.8
Hma1.2p1_0169F.1_g074510 Hydrangea macrophylla HOM05D002335 ORTHO05D006282 8.5e-146 520.8 343 79.6
Ciclev10008755m.g Citrus clementina HOM05D002335 ORTHO05D006282 2.3e-143 512.7 354 76.6
Gohir.D13G196375 Gossypium hirsutum HOM05D002335 ORTHO05D006282 3.9e-143 511.9 358 76.0
FvH4_1g08690 Fragaria vesca HOM05D002335 ORTHO05D006282 2.5e-142 509.2 351 76.4
Gohir.A13G190800 Gossypium hirsutum HOM05D002335 ORTHO05D006282 7.4e-142 507.7 358 75.4
Gorai.013G224300 Gossypium raimondii HOM05D002335 ORTHO05D006282 9.7e-142 507.3 359 75.8
Glyma.15G177700 Glycine max HOM05D002335 ORTHO05D006282 1.1e-140 503.8 354 75.4
Potri.018G056500 Populus trichocarpa HOM05D002335 ORTHO05D006282 7.7e-139 497.7 355 74.4
Phvul.009G227200 Phaseolus vulgaris HOM05D002335 ORTHO05D006282 1.7e-138 496.5 340 77.1
VMungo1309G0226 Vigna mungo HOM05D002335 ORTHO05D006282 5.0e-138 495.0 349 75.1
TPR.G27760 Trifolium pratense HOM05D002335 ORTHO05D006282 1.2e-136 490.3 351 73.5
Eucgr.C03328 Eucalyptus grandis HOM05D002335 ORTHO05D006282 7.9e-136 487.6 347 74.9
Migut.J00924 Erythranthe guttata HOM05D002335 ORTHO05D006282 3.0e-135 485.7 357 72.8
Glyma.09G069700 Glycine max HOM05D002335 ORTHO05D006282 5.1e-135 485.0 354 73.4
Dinv25558 Davidia involucrata HOM05D002335 ORTHO05D006282 9.7e-134 480.7 340 74.7
Lj6g0009960 Lotus japonicus HOM05D002335 ORTHO05D006282 1.3e-133 480.3 355 73.8
Thecc.09G076700 Theobroma cacao HOM05D002335 ORTHO05D006282 1.3e-133 480.3 356 72.8
PSO135G0390 Papaver somniferum HOM05D002335 ORTHO05D006282 2.8e-133 479.2 351 69.8
PSO724G0129 Papaver somniferum HOM05D002335 ORTHO05D006282 4.8e-133 478.4 351 69.5
Manes.16G095200 Manihot esculenta HOM05D002335 ORTHO05D006282 1.4e-132 476.9 341 74.8
Dinv42395 Davidia involucrata HOM05D002335 ORTHO05D006282 7.0e-132 474.6 346 73.7
CSS0005090 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006282 1.3e-130 470.3 357 71.1
Solyc12g009100.2 Solanum lycopersicum HOM05D002335 ORTHO05D006282 1.3e-130 470.3 345 70.7
Sopen12g004050 Solanum pennellii HOM05D002335 ORTHO05D006282 1.3e-130 470.3 345 71.0
THA.LOC104815334 Tarenaya hassleriana HOM05D002335 ORTHO05D006282 5.0e-130 468.4 350 71.4
Duzib187G0696 Durio zibethinus HOM05D002335 ORTHO05D006282 1.9e-129 466.5 356 71.3
GSVIVG01015081001 Vitis vinifera HOM05D002335 ORTHO05D006282 2.5e-129 466.1 349 71.3
TAR383G0969 Trochodendron aralioides HOM05D002335 ORTHO05D006282 5.5e-129 464.9 346 71.1
COL.COLO4_18096 Corchorus olitorius HOM05D002335 ORTHO05D006282 9.4e-129 464.2 356 71.1
Peaxi162Scf00928g00036 Petunia axillaris HOM05D002335 ORTHO05D006282 9.4e-129 464.2 328 73.5
Sabra18G0052300 Salix brachista HOM05D002335 ORTHO05D006282 1.6e-128 463.4 435 61.1
AUR62028934 Chenopodium quinoa HOM05D002335 ORTHO05D006282 2.1e-128 463.0 357 68.9
Nn8g38636 Nelumbo nucifera HOM05D002335 ORTHO05D006282 2.7e-128 462.6 349 69.3
MD02G1091400 Malus domestica HOM05D002335 ORTHO05D006282 3.6e-128 462.2 346 71.7
BcaB06g26879 Brassica carinata HOM05D002335 ORTHO05D006282 1.0e-127 460.7 354 70.3
HanXRQChr04g0126011 Helianthus annuus HOM05D002335 ORTHO05D006282 2.3e-127 459.5 336 72.9
Eucgr.C03263 Eucalyptus grandis HOM05D002335 ORTHO05D006282 3.0e-127 459.1 330 74.5
FAN26G1551 Fragaria x ananassa HOM05D002335 ORTHO05D006282 8.8e-127 457.6 351 70.1
Aa31sc133G10 Aethionema arabicum HOM05D002335 ORTHO05D006282 1.5e-126 456.8 342 71.9
A07p06320 Brassica napus HOM05D002335 ORTHO05D006282 2.6e-126 456.1 354 69.2
RcHm_v2.0_Chr2g0095141 Rosa chinensis HOM05D002335 ORTHO05D006282 2.6e-126 456.1 346 70.8
FAN28G1803 Fragaria x ananassa HOM05D002335 ORTHO05D006282 3.3e-126 455.7 351 69.5
TWI34G0307 Tripterygium wilfordii HOM05D002335 ORTHO05D006282 3.3e-126 455.7 351 70.4
BcaC06g35950 Brassica carinata HOM05D002335 ORTHO05D006282 4.4e-126 455.3 354 69.5
Ca_02205_v3 Cicer arietinum L. HOM05D002335 ORTHO05D006282 1.7e-125 453.4 355 69.9
MBI19_g16223_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006282 1.8e-124 449.9 352 68.8
C07p09370 Brassica napus HOM05D002335 ORTHO05D006282 2.4e-124 449.5 340 70.9
BolC7t41360H Brassica oleracea HOM05D002335 ORTHO05D006282 2.4e-124 449.5 340 70.9
CANSAT56G2952 Cannabis sativa HOM05D002335 ORTHO05D006282 3.1e-124 449.1 367 68.1
Duzib168G0796 Durio zibethinus HOM05D002335 ORTHO05D006282 1.2e-123 447.2 342 70.2
Thhalv10014003m.g Eutrema salsugineum HOM05D002335 ORTHO05D006282 4.5e-123 445.3 334 70.4
EL10Ac8g19056 Beta vulgaris HOM05D002335 ORTHO05D006282 5.9e-123 444.9 378 65.6
BraA07t28424Z Brassica rapa HOM05D002335 ORTHO05D006282 5.9e-123 444.9 356 68.3
Haze_26014 Corylus avellana HOM05D002335 ORTHO05D006282 5.9e-123 444.9 394 65.5
ECA236G4601 Erigeron canadensis HOM05D002335 ORTHO05D006282 5.9e-123 444.9 345 68.4
Sp3g24570 Schrenkiella parvula HOM05D002335 ORTHO05D006282 7.7e-123 444.5 356 68.8
Actinidia29935 Actinidia chinensis HOM05D002335 ORTHO05D006282 2.9e-122 442.6 346 70.2
AL6G32120 Arabidopsis lyrata HOM05D002335 ORTHO05D006282 2.9e-122 442.6 350 68.9
Manes.03G040500 Manihot esculenta HOM05D002335 ORTHO05D006282 8.5e-122 441.0 339 69.9
AT5G20580 Arabidopsis thaliana HOM05D002335 ORTHO05D006282 1.5e-121 440.3 350 68.9
Carub.0003s2712 Capsella rubella HOM05D002335 ORTHO05D006282 1.5e-121 440.3 356 69.1
Medtr2g041690 Medicago truncatula HOM05D002335 ORTHO05D006282 1.5e-121 440.3 355 67.0
THA.LOC104799620 Tarenaya hassleriana HOM05D002335 ORTHO05D006282 1.5e-121 440.3 334 70.7
Sp6g23900 Schrenkiella parvula HOM05D002335 ORTHO05D006282 3.2e-121 439.1 346 69.4
C03p11680 Brassica napus HOM05D002335 ORTHO05D006282 4.2e-121 438.7 341 69.5
BraA03t10325Z Brassica rapa HOM05D002335 ORTHO05D006282 4.2e-121 438.7 344 68.9
Carub.0006s1891 Capsella rubella HOM05D002335 ORTHO05D006282 7.2e-121 438.0 350 68.3
Aqoxy7G04129 Aquilegia oxysepala HOM05D002335 ORTHO05D006282 9.4e-121 437.6 356 66.0
Cc06_g12190 Coffea canephora HOM05D002335 ORTHO05D006282 2.7e-120 436.0 345 68.1
MSTRG.19458 Avicennia marina HOM05D002335 ORTHO05D006282 3.6e-120 435.6 345 67.8
Lsat_1_v5_gn_8_86481 Lactuca sativa HOM05D002335 ORTHO05D006282 1.4e-119 433.7 344 66.3
MD15G1217700 Malus domestica HOM05D002335 ORTHO05D006282 4.0e-119 432.2 318 71.7
AL3G43580 Arabidopsis lyrata HOM05D002335 ORTHO05D006282 5.7e-118 428.3 355 67.0
ATR0598G025 Amborella trichopoda HOM05D002335 ORTHO05D006282 7.5e-118 427.9 348 65.2
SalBow6G4624 Salvia bowleyana HOM05D002335 ORTHO05D006282 6.3e-117 424.9 300 76.0
AUR62025250 Chenopodium quinoa HOM05D002335 ORTHO05D006282 1.4e-116 423.7 338 67.8
PGR044G1875 Punica granatum HOM05D002335 ORTHO05D006282 4.1e-116 422.2 291 77.3
Nitab4.5_0011754g0010 Nicotiana tabacum HOM05D002335 ORTHO05D006282 1.1e-113 414.1 347 65.7
Hund26035 Selenicereus undatus HOM05D002335 ORTHO05D006282 1.1e-113 414.1 296 73.0
Zm00001eb256890 Zea mays HOM05D002335 ORTHO05D006282 1.5e-113 413.7 344 63.4
SGA_v2.0_scaffold308G48076 Striga asiatica HOM05D002335 ORTHO05D006282 2.5e-113 412.9 317 71.0
Atru.chr7.1708 Acer truncatum HOM05D002335 ORTHO05D006282 4.2e-113 412.1 283 75.6
HPP92_004364 Vanilla planifolia HOM05D002335 ORTHO05D006282 9.4e-113 411.0 349 62.2
Prupe.7G198700 Prunus persica HOM05D002335 ORTHO05D006282 6.1e-112 408.3 346 65.3
arahy.Tifrunner.gnm1.ann1.UHGN3W Arachis hypogaea HOM05D002335 ORTHO05D006282 4.1e-108 395.6 340 65.6
QL11p000781 Quercus lobata HOM05D002335 ORTHO05D006282 1.0e-106 391.0 372 62.4
BolC3t13639H Brassica oleracea HOM05D005537 ORTHO05D006776 2.9e-106 389.4 296 71.3
vmacro06343 Vaccinium macrocarpon HOM05D002335 ORTHO05D006282 6.6e-106 388.3 403 57.6
CARHR192220 Cardamine hirsuta HOM05D002335 ORTHO05D006282 1.9e-105 386.7 296 70.3
Lsat_1_v5_gn_7_35121 Lactuca sativa HOM05D002335 ORTHO05D006692 2.8e-104 382.9 337 62.6
CAN.G1661.12 Capsicum annuum HOM05D002335 ORTHO05D006282 5.7e-102 375.2 345 60.6
Sopen07g021360 Solanum pennellii HOM05D002335 ORTHO05D006282 7.5e-102 374.8 331 62.2
CARHR103630 Cardamine hirsuta HOM05D002335 ORTHO05D006282 1.3e-101 374.0 303 69.3
Psat1g134320 Pisum sativum HOM05D002335 ORTHO05D006282 6.3e-101 371.7 275 74.9
TWI63G1279 Tripterygium wilfordii HOM05D002335 ORTHO05D006282 2.5e-97 359.8 349 59.6
Rhsim03G0227400 Rhododendron simsii HOM05D002335 ORTHO05D005129 4.3e-97 359.0 390 56.4
AT2G06005 Arabidopsis thaliana HOM05D002335 ORTHO05D006282 1.4e-95 354.0 295 69.2
Aa31LG1G14100 Aethionema arabicum HOM05D002335 ORTHO05D006282 1.8e-95 353.6 439 49.7
Psat3g025000 Pisum sativum HOM05D002335 ORTHO05D006282 5.2e-95 352.1 248 73.0
Nitab4.5_0000073g0170 Nicotiana tabacum HOM05D002335 ORTHO05D006282 6.8e-95 351.7 401 52.9
HPP92_004366 Vanilla planifolia HOM05D002335 ORTHO05D006282 2.2e-93 346.7 349 55.9
SEGI_06962 Sequoiadendron giganteum HOM05D002335 ORTHO05D006282 4.1e-92 342.4 339 55.5
SHI23809 Sapria himalayana HOM05D002335 ORTHO05D006282 2.3e-90 336.7 235 76.2
FAN23G1616 Fragaria x ananassa HOM05D002335 ORTHO05D006282 8.9e-87 324.7 248 73.0
Cpa.g.sc28.33 Carica papaya HOM05D002335 ORTHO05D006282 5.8e-86 322.0 229 72.9
Nitab4.5_0009436g0040 Nicotiana tabacum HOM05D002335 ORTHO05D006282 5.8e-86 322.0 409 50.4
Lj7C687T14 Lonicera japonica HOM05D002335 ORTHO05D006282 5.1e-82 308.9 258 69.0
CDE02G0868 Ceratophyllum demersum HOM05D002335 ORTHO05D006282 1.5e-81 307.4 230 70.4
Sc18g0002560 Simmondsia chinensis HOM05D002335 ORTHO05D006282 3.6e-80 302.8 244 69.3
Peaxi162Scf00127g01814 Petunia axillaris HOM05D002335 ORTHO05D006282 1.1e-73 281.2 276 60.1
Lalb_Chr07g0181191 Lupinus albus HOM05D002335 ORTHO05D006282 1.9e-73 280.4 230 64.8
arahy.Tifrunner.gnm1.ann1.3UYF95 Arachis hypogaea HOM05D002335 ORTHO05D006282 1.1e-71 274.6 223 65.5
Pp3c22_13730 Physcomitrium patens HOM05D002335 ORTHO05D006282 1.4e-71 274.2 333 46.8
CAN.G404.48 Capsicum annuum HOM05D002335 ORTHO05D006282 2.4e-71 273.5 304 53.3
Lalb_Chr23g0276371 Lupinus albus HOM05D002335 ORTHO05D006282 5.2e-71 272.3 204 69.6
Mapoly0011s0025 Marchantia polymorpha HOM05D002335 ORTHO05D006282 8.4e-69 265.0 344 45.3
DCAR_028335 Daucus carota HOM05D002335 ORTHO05D006282 7.8e-67 258.5 183 76.5
Pp3c2_6470 Physcomitrium patens HOM05D002335 ORTHO05D006282 3.4e-62 243.0 330 43.9
Actinidia38482 Actinidia chinensis HOM05D002335 ORTHO05D006282 7.6e-54 215.3 148 72.3
Lalb_Chr23g0276381 Lupinus albus HOM05D002335 ORTHO05D006282 6.4e-53 212.2 145 80.7
SMO358G0254 Selaginella moellendorffii HOM05D002335 ORTHO05D006282 1.4e-47 194.5 196 57.7
MD02G1091600 Malus domestica HOM05D002335 ORTHO05D006282 3.1e-47 193.4 145 66.9
Lalb_Chr07g0181181 Lupinus albus HOM05D002335 ORTHO05D006282 2.6e-46 190.3 161 66.5
Nitab4.5_0000343g0220 Nicotiana tabacum HOM05D002335 ORTHO05D006282 4.3e-41 172.9 129 67.4
AagrBONN_evm.TU.Sc2ySwM_344.5493 Anthoceros agrestis HOM05D002335 ORTHO05D006282 6.1e-35 152.5 309 35.3
Cpa.g.sc28.37 Carica papaya HOM05D002335 ORTHO05D006282 1.5e-33 147.9 114 71.9
Actinidia38481 Actinidia chinensis HOM05D002335 ORTHO05D006282 2.2e-32 144.1 119 69.7
Nitab4.5_0000343g0210 Nicotiana tabacum HOM05D002335 ORTHO05D006282 2.4e-31 140.6 98 76.5
CBR_g26318 Chara braunii HOM05D002335 ORTHO05D006282 1.5e-22 111.3 216 35.6
arahy.Tifrunner.gnm1.ann1.HK8DFN Arachis hypogaea HOM05D002335 ORTHO05D006282 2.9e-21 107.1 99 55.6
Solyc07g041890.1 Solanum lycopersicum HOM05D002335 ORTHO05D006282 1.9e-20 104.4 166 44.0
Ah.14g084930 Amaranthus hybridus HOM05D002335 ORTHO05D006282 5.5e-20 102.8 89 64.0
Medtr2g041390 Medicago truncatula HOM05D002335 ORTHO05D006282 4.7e-19 99.8 111 55.0
Oeu011491.2 Olea europaea HOM05D002335 ORTHO05D006282 3.0e-18 97.1 78 61.5
Oeu031390.1 Olea europaea HOM05D002335 ORTHO05D006282 1.7e-13 81.3 50 82.0
Cpa.g.c47777 Carica papaya HOM05D002335 ORTHO05D006282 2.2e-13 80.9 52 80.8
PSO210G7126 Papaver somniferum HOM05D002335 ORTHO05D006282 2.9e-13 80.5 69 58.0
PGSC0003DMG400019032 Solanum tuberosum HOM05D002335 ORTHO05D006282 3.8e-13 80.1 56 75.0
arahy.Tifrunner.gnm1.ann1.S4WZ34 Arachis hypogaea HOM05D000237 ORTHO05D017465 1.5e-12 78.2 57 59.6
Psat6g064600 Pisum sativum HOM05D004726 ORTHO05D005986 3.2e-12 77.0 53 75.5
arahy.Tifrunner.gnm1.ann1.Y6L4BT Arachis hypogaea HOM05D000237 ORTHO05D017465 8.0e-11 72.4 72 48.6
arahy.Tifrunner.gnm1.ann1.WCUD5S Arachis hypogaea HOM05D000237 ORTHO05D017465 2.6e-09 67.4 67 52.2
arahy.Tifrunner.gnm1.ann1.9B3XF4 Arachis hypogaea HOM05D000237 ORTHO05D017465 1.7e-08 64.7 51 54.9
arahy.Tifrunner.gnm1.ann1.2X24PF Arachis hypogaea HOM05D002335 ORTHO05D006282 3.7e-08 63.5 56 60.7
CAN.G2458.1 Capsicum annuum HOM05D002335 ORTHO05D006282 7.7e-06 55.8 74 47.3


User provided reference genes

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