Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0016003 Sechium edule HOM05D000097 ORTHO05D000041 2.6e-189 665.2 337 100.0
Sed0006859 Sechium edule HOM05D000097 ORTHO05D000041 3.6e-37 159.8 415 32.0
Sed0025781 Sechium edule HOM05D000097 ORTHO05D000041 8.8e-28 128.6 660 25.3
VMungo0540G0734 Vigna mungo HOM05D000097 ORTHO05D000041 3.7e-26 123.2 262 35.5
ClCG07G000470 Citrullus lanatus HOM05D000097 ORTHO05D000041 1.2e-24 118.2 249 34.5
Sed0020821 Sechium edule HOM05D000097 ORTHO05D000041 3.2e-22 110.2 84 71.4
RcHm_v2.0_Chr6g0290151 Rosa chinensis HOM05D000097 ORTHO05D000041 4.2e-22 109.8 346 28.9
MELO3C027378.2 Cucumis melo HOM05D000995 ORTHO05D001773 1.8e-20 104.4 111 47.7
MELO3C002970.2 Cucumis melo HOM05D000097 ORTHO05D000041 4.0e-20 103.2 99 51.5
CsaV3_5G025210 Cucumis sativus L. HOM05D000097 ORTHO05D000041 2.6e-19 100.5 425 25.4
Prupe.8G235300 Prunus persica HOM05D000097 ORTHO05D000041 5.7e-19 99.4 407 26.8
Glyma.13G224800 Glycine max HOM05D000097 ORTHO05D000041 7.5e-19 99.0 374 27.3
arahy.Tifrunner.gnm1.ann1.KVPH3I Arachis hypogaea HOM05D000097 ORTHO05D000041 9.1e-17 92.0 306 29.4
CsaV3_5G025200 Cucumis sativus L. HOM05D000097 ORTHO05D000041 1.6e-16 91.3 423 24.6
Prupe.8G235400 Prunus persica HOM05D000097 ORTHO05D000041 1.0e-15 88.6 424 25.0
GSVIVG01001208001 Vitis vinifera HOM05D000097 ORTHO05D000041 1.1e-14 85.1 134 38.1
QL04p005986 Quercus lobata HOM05D000097 ORTHO05D000041 1.5e-14 84.7 112 41.1
MD03G1258700 Malus domestica HOM05D000097 ORTHO05D000041 3.2e-14 83.6 97 42.3
TAR636G0150 Trochodendron aralioides HOM05D000097 ORTHO05D009673 5.5e-14 82.8 257 27.6
GSVIVG01001206001 Vitis vinifera HOM05D000097 ORTHO05D000041 5.5e-14 82.8 123 39.8
TAR633G2122 Trochodendron aralioides HOM05D000097 ORTHO05D000041 7.2e-14 82.4 323 26.0
RcHm_v2.0_Chr6g0290111 Rosa chinensis HOM05D000097 ORTHO05D000041 9.4e-14 82.0 201 32.3
Ciclev10006513m.g Citrus clementina HOM05D000097 ORTHO05D000041 3.6e-13 80.1 227 28.6
GSVIVG01019157001 Vitis vinifera HOM05D000097 ORTHO05D000041 3.6e-13 80.1 106 43.4
Hma1.2p1_0172F.1_g075930 Hydrangea macrophylla HOM05D000097 ORTHO05D000041 4.7e-13 79.7 110 43.6
Phvul.006G170700 Phaseolus vulgaris HOM05D000097 ORTHO05D000041 4.7e-13 79.7 430 23.5
MD11G1279300 Malus domestica HOM05D000097 ORTHO05D000041 6.1e-13 79.3 97 44.3
arahy.Tifrunner.gnm1.ann1.6ST5A0 Arachis hypogaea HOM05D000097 ORTHO05D000041 1.4e-12 78.2 247 27.9
PSO832G1868 Papaver somniferum HOM05D000097 ORTHO05D000041 1.4e-12 78.2 101 43.6
RcHm_v2.0_Chr6g0290091 Rosa chinensis HOM05D000097 ORTHO05D000041 1.4e-12 78.2 187 32.6
Oeu023628.1 Olea europaea HOM05D000097 ORTHO05D000041 1.8e-12 77.8 112 38.4
TAR362G0086 Trochodendron aralioides HOM05D000097 ORTHO05D000041 3.0e-12 77.0 103 40.8
ClCG00G002910 Citrullus lanatus HOM05D000097 ORTHO05D000041 5.2e-12 76.3 92 43.5
Dinv38234 Davidia involucrata HOM05D000097 ORTHO05D000041 6.8e-12 75.9 109 37.6
VMungo0540G1282 Vigna mungo HOM05D000097 ORTHO05D000041 6.8e-12 75.9 100 41.0
GSVIVG01019314001 Vitis vinifera HOM05D000097 ORTHO05D000041 6.8e-12 75.9 326 25.2
MELO3C014331.2 Cucumis melo HOM05D000097 ORTHO05D000041 8.8e-12 75.5 104 40.4
GSVIVG01001212001 Vitis vinifera HOM05D000097 ORTHO05D000041 8.8e-12 75.5 100 41.0
QL05p038682 Quercus lobata HOM05D000097 ORTHO05D000041 1.2e-11 75.1 277 28.5
GSVIVG01003648001 Vitis vinifera HOM05D000097 ORTHO05D000041 1.5e-11 74.7 262 24.8
Lj1C54T4 Lonicera japonica HOM05D000097 ORTHO05D000041 2.0e-11 74.3 96 38.5
arahy.Tifrunner.gnm1.ann1.H5F011 Arachis hypogaea HOM05D000097 ORTHO05D000041 2.6e-11 73.9 320 26.6
GSVIVG01001209001 Vitis vinifera HOM05D000097 ORTHO05D000041 2.6e-11 73.9 100 40.0
MELO3C002969.2 Cucumis melo HOM05D000097 ORTHO05D000041 3.4e-11 73.6 130 35.4
Dinv05551 Davidia involucrata HOM05D000097 ORTHO05D000041 3.4e-11 73.6 293 25.6
Lj1C53G9 Lonicera japonica HOM05D000097 ORTHO05D000041 3.4e-11 73.6 96 38.5
CANSAT25G2251 Cannabis sativa HOM05D000097 ORTHO05D000041 4.4e-11 73.2 107 40.2
Duzib138G0530 Durio zibethinus HOM05D000097 ORTHO05D000041 5.7e-11 72.8 141 29.8
MELO3C002962.2 Cucumis melo HOM05D000097 ORTHO05D000041 1.3e-10 71.6 168 35.7
Manes.03G147700 Manihot esculenta HOM05D000097 ORTHO05D000041 1.3e-10 71.6 105 37.1
CiPaw.07G087700 Carya illinoinensis HOM05D000097 ORTHO05D000041 1.7e-10 71.2 97 38.1
PSO210G6515 Papaver somniferum HOM05D000097 ORTHO05D000041 1.7e-10 71.2 100 42.0
QL12p042001 Quercus lobata HOM05D000097 ORTHO05D000041 1.7e-10 71.2 96 41.7
Haze_04651 Corylus avellana HOM05D000097 ORTHO05D000041 2.2e-10 70.9 126 34.9
Glyma.07G252400 Glycine max HOM05D000097 ORTHO05D000041 2.2e-10 70.9 95 38.9
arahy.Tifrunner.gnm1.ann1.R2WDYV Arachis hypogaea HOM05D000097 ORTHO05D000041 2.8e-10 70.5 99 39.4
Lj1C52T4 Lonicera japonica HOM05D000097 ORTHO05D000041 2.8e-10 70.5 95 37.9
MBI04_g26286_MAGBIO Magnolia biondii HOM05D000097 ORTHO05D000041 4.8e-10 69.7 110 37.3
Lj4g0005456 Lotus japonicus HOM05D000097 ORTHO05D000041 6.3e-10 69.3 101 34.7
TWI12G0958 Tripterygium wilfordii HOM05D000097 ORTHO05D000041 6.3e-10 69.3 109 38.5
CiPaw.15G182300 Carya illinoinensis HOM05D000097 ORTHO05D000041 1.1e-09 68.6 118 37.3
Glyma.15G087500 Glycine max HOM05D000097 ORTHO05D000041 1.1e-09 68.6 112 34.8
TPR.G35474 Trifolium pratense HOM05D000097 ORTHO05D000041 1.1e-09 68.6 339 24.8
arahy.Tifrunner.gnm1.ann1.22V61H Arachis hypogaea HOM05D000097 ORTHO05D000041 1.4e-09 68.2 106 38.7
Lj1C52T3 Lonicera japonica HOM05D000097 ORTHO05D000041 1.4e-09 68.2 97 36.1
SalBow6G2878 Salvia bowleyana HOM05D000097 ORTHO05D000041 1.8e-09 67.8 106 33.0
SalBow6G5415 Salvia bowleyana HOM05D000097 ORTHO05D000041 1.8e-09 67.8 106 33.0
Psat2g025920 Pisum sativum HOM05D000097 ORTHO05D000041 2.4e-09 67.4 174 31.6
PGR142G2411 Punica granatum HOM05D000097 ORTHO05D000041 2.4e-09 67.4 101 36.6
GSVIVG01003109001 Vitis vinifera HOM05D000097 ORTHO05D000041 2.4e-09 67.4 72 45.8
GSVIVG01017541001 Vitis vinifera HOM05D000097 ORTHO05D000041 2.4e-09 67.4 128 35.2
Actinidia19957 Actinidia chinensis HOM05D000097 ORTHO05D000041 3.1e-09 67.0 113 38.1
PGR142G0658 Punica granatum HOM05D000097 ORTHO05D000041 3.1e-09 67.0 116 32.8
GSVIVG01017530001 Vitis vinifera HOM05D000097 ORTHO05D000041 3.1e-09 67.0 128 34.4
CsaV3_6G036770 Cucumis sativus L. HOM05D000097 ORTHO05D000041 4.1e-09 66.6 104 35.6
QL12p041961 Quercus lobata HOM05D000097 ORTHO05D000041 9.1e-09 65.5 109 35.8
TAR633G0997 Trochodendron aralioides HOM05D000097 ORTHO05D000041 9.1e-09 65.5 122 34.4
Ciclev10004436m.g Citrus clementina HOM05D000097 ORTHO05D000041 1.2e-08 65.1 122 34.4
Haze_04656 Corylus avellana HOM05D000097 ORTHO05D000041 1.2e-08 65.1 96 38.5
MBI15_g14063_MAGBIO Magnolia biondii HOM05D000097 ORTHO05D000041 1.2e-08 65.1 98 35.7
Dinv27239 Davidia involucrata HOM05D000097 ORTHO05D000041 1.6e-08 64.7 98 35.7
Dinv29595 Davidia involucrata HOM05D000097 ORTHO05D000041 1.6e-08 64.7 98 35.7
TAR633G0183 Trochodendron aralioides HOM05D000097 ORTHO05D000041 1.6e-08 64.7 105 37.1
HPP92_023526 Vanilla planifolia HOM05D000097 ORTHO05D000041 1.6e-08 64.7 111 36.0
VMungo0647G1961 Vigna mungo HOM05D000097 ORTHO05D000041 1.6e-08 64.7 103 36.9
GSVIVG01003105001 Vitis vinifera HOM05D000097 ORTHO05D000041 1.6e-08 64.7 406 24.4
Cfa006187 Carpinus fangiana HOM05D000097 ORTHO05D000041 2.0e-08 64.3 107 37.4
Ciclev10004568m.g Citrus clementina HOM05D000097 ORTHO05D000041 2.0e-08 64.3 112 35.7
QL12p041667 Quercus lobata HOM05D000097 ORTHO05D000041 2.0e-08 64.3 112 35.7
GSVIVG01017534001 Vitis vinifera HOM05D000097 ORTHO05D000041 2.0e-08 64.3 103 36.9
Medtr2g020450 Medicago truncatula HOM05D000097 ORTHO05D000041 2.7e-08 63.9 100 34.0
ClCG00G002900 Citrullus lanatus HOM05D000097 ORTHO05D000041 3.5e-08 63.5 87 44.8
Cc03_g07820 Coffea canephora HOM05D000097 ORTHO05D000041 3.5e-08 63.5 98 35.7
Haze_21928 Corylus avellana HOM05D000097 ORTHO05D000041 4.5e-08 63.2 107 37.4
Dinv13779 Davidia involucrata HOM05D000097 ORTHO05D000041 4.5e-08 63.2 102 33.3
Medtr2g020510 Medicago truncatula HOM05D000097 ORTHO05D000041 5.9e-08 62.8 102 33.3
TPR.G1508 Trifolium pratense HOM05D000097 ORTHO05D000041 5.9e-08 62.8 107 32.7
CiPaw.15G182200 Carya illinoinensis HOM05D000097 ORTHO05D000041 7.7e-08 62.4 108 33.3
Medtr5g085340 Medicago truncatula HOM05D000097 ORTHO05D000041 7.7e-08 62.4 111 36.0
TAR362G0859 Trochodendron aralioides HOM05D000097 ORTHO05D000041 7.7e-08 62.4 102 36.3
Medtr2g020470 Medicago truncatula HOM05D000097 ORTHO05D000041 1.0e-07 62.0 99 35.4
QL12p041840 Quercus lobata HOM05D000097 ORTHO05D000041 1.3e-07 61.6 302 24.2
GSVIVG01005243001 Vitis vinifera HOM05D000097 ORTHO05D000041 1.7e-07 61.2 110 33.6
Dinv13783 Davidia involucrata HOM05D000097 ORTHO05D000041 2.2e-07 60.8 144 31.2
Glyma.18G100300 Glycine max HOM05D000097 ORTHO05D000041 2.2e-07 60.8 104 40.4
CiPaw.16G117600 Carya illinoinensis HOM05D000097 ORTHO05D000041 2.9e-07 60.5 107 33.6
Gohir.A08G064400 Gossypium hirsutum HOM05D000097 ORTHO05D000041 2.9e-07 60.5 163 29.4
Nitab4.5_0000850g0100 Nicotiana tabacum HOM05D000097 ORTHO05D000041 2.9e-07 60.5 215 24.2
Oeu034559.1 Olea europaea HOM05D000097 ORTHO05D000041 2.9e-07 60.5 107 33.6
Thecc.01G272600 Theobroma cacao HOM05D000097 ORTHO05D000041 2.9e-07 60.5 141 27.7
Gohir.D08G072900 Gossypium hirsutum HOM05D000097 ORTHO05D000041 3.8e-07 60.1 163 28.2
Medtr3g051020 Medicago truncatula HOM05D000097 ORTHO05D000041 3.8e-07 60.1 106 34.9
Medtr3g050500 Medicago truncatula HOM05D000097 ORTHO05D000041 5.0e-07 59.7 112 35.7
Psat1g186680 Pisum sativum HOM05D000097 ORTHO05D000041 5.0e-07 59.7 108 34.3
Glyma.02G268100 Glycine max HOM05D000097 ORTHO05D000041 6.5e-07 59.3 116 36.2
MD13G1283400 Malus domestica HOM05D000097 ORTHO05D000041 6.5e-07 59.3 108 32.4
Psat5g168640 Pisum sativum HOM05D000097 ORTHO05D000041 6.5e-07 59.3 116 33.6
GSVIVG01003464001 Vitis vinifera HOM05D000097 ORTHO05D000041 6.5e-07 59.3 112 30.4
Lj6g0000778 Lotus japonicus HOM05D000097 ORTHO05D000041 8.5e-07 58.9 100 37.0
TAR362G0550 Trochodendron aralioides HOM05D000097 ORTHO05D000041 8.5e-07 58.9 74 47.3
GSVIVG01003459001 Vitis vinifera HOM05D000097 ORTHO05D000041 8.5e-07 58.9 112 30.4
CiPaw.07G087300 Carya illinoinensis HOM05D000097 ORTHO05D000041 1.1e-06 58.5 202 24.8
COL.COLO4_09198 Corchorus olitorius HOM05D000097 ORTHO05D000041 1.1e-06 58.5 108 29.6
Lalb_Chr20g0118221 Lupinus albus HOM05D000097 ORTHO05D000041 1.1e-06 58.5 99 34.3
GSVIVG01001207001 Vitis vinifera HOM05D002297 ORTHO05D002385 1.1e-06 58.5 93 34.4
arahy.Tifrunner.gnm1.ann1.IWNS16 Arachis hypogaea HOM05D000097 ORTHO05D000041 1.5e-06 58.2 109 32.1
Migut.N02030 Erythranthe guttata HOM05D000097 ORTHO05D000041 1.5e-06 58.2 129 34.9
QL12p041886 Quercus lobata HOM05D000097 ORTHO05D000041 1.5e-06 58.2 82 40.2
TPR.G16582 Trifolium pratense HOM05D000097 ORTHO05D000041 1.5e-06 58.2 96 35.4
Cc00_g33890 Coffea canephora HOM05D000097 ORTHO05D000041 1.9e-06 57.8 104 33.7
Hma1.2p1_0172F.1_g075960 Hydrangea macrophylla HOM05D000097 ORTHO05D000041 1.9e-06 57.8 156 31.4
GSVIVG01005250001 Vitis vinifera HOM05D000097 ORTHO05D000041 1.9e-06 57.8 112 31.2
Cc01_g19070 Coffea canephora HOM05D000097 ORTHO05D000041 2.5e-06 57.4 148 31.1
TPR.G30738 Trifolium pratense HOM05D000097 ORTHO05D000041 2.5e-06 57.4 120 33.3
Gorai.004G077300 Gossypium raimondii HOM05D000097 ORTHO05D000041 3.2e-06 57.0 165 27.9
Medtr5g085360 Medicago truncatula HOM05D000097 ORTHO05D000041 3.2e-06 57.0 180 28.3
QL12p041815 Quercus lobata HOM05D000097 ORTHO05D000041 3.2e-06 57.0 99 34.3
TPR.G35476 Trifolium pratense HOM05D000097 ORTHO05D000041 3.2e-06 57.0 122 33.6
Phvul.008G214000 Phaseolus vulgaris HOM05D000097 ORTHO05D000041 4.2e-06 56.6 103 35.9
Lalb_Chr09g0321361 Lupinus albus HOM05D000097 ORTHO05D000041 5.5e-06 56.2 107 33.6
Psat5g170000 Pisum sativum HOM05D000097 ORTHO05D000041 5.5e-06 56.2 116 31.0
GSVIVG01001211001 Vitis vinifera HOM05D000097 ORTHO05D000041 5.5e-06 56.2 92 33.7
arahy.Tifrunner.gnm1.ann1.0WQ0Q9 Arachis hypogaea HOM05D000097 ORTHO05D000041 7.2e-06 55.8 110 33.6
Phvul.008G214100 Phaseolus vulgaris HOM05D000097 ORTHO05D000041 7.2e-06 55.8 103 35.9
CANSAT11G0308 Cannabis sativa HOM05D000097 ORTHO05D000041 9.5e-06 55.5 129 28.7
Ca_25876_v3 Cicer arietinum L. HOM05D000097 ORTHO05D000041 9.5e-06 55.5 271 24.4


User provided reference genes

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