Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0011263 Sechium edule HOM05D003517 ORTHO05D009794 5.3e-108 394.4 209 100.0
Sed0015872 Sechium edule HOM05D003517 ORTHO05D009794 5.3e-108 394.4 209 100.0
ATMG00270 Arabidopsis thaliana HOM05D003517 ORTHO05D009794 7.4e-102 374.0 202 97.5
BNapus_Darmor_BZH_scaffold_234p00290 Brassica napus HOM05D003517 ORTHO05D009794 7.4e-102 374.0 202 97.5
BolSC28t60338H Brassica oleracea HOM05D003517 ORTHO05D009794 7.4e-102 374.0 202 97.5
BolSC28t60397H Brassica oleracea HOM05D003517 ORTHO05D009794 7.4e-102 374.0 202 97.5
BraSC77t46643Z Brassica rapa HOM05D003517 ORTHO05D009794 7.4e-102 374.0 202 97.5
CARHR282730 Cardamine hirsuta HOM05D003517 ORTHO05D009794 7.4e-102 374.0 202 97.5
CANSAT16G0040 Cannabis sativa HOM05D003517 ORTHO05D009794 2.2e-101 372.5 202 97.0
RcHm_v2.0_MTg0498991 Rosa chinensis HOM05D003517 ORTHO05D009794 2.8e-101 372.1 202 97.5
Peaxi162Scf00456g00029 Petunia axillaris HOM05D003517 ORTHO05D009794 9.1e-100 367.1 202 96.5
Solyc00g021630.1 Solanum lycopersicum HOM05D003517 ORTHO05D009794 9.1e-100 367.1 202 96.5
Lj5g0026865 Lotus japonicus HOM05D003517 ORTHO05D009794 4.5e-99 364.8 202 95.5
LjContig00439g0001390 Lotus japonicus HOM05D003517 ORTHO05D009794 4.5e-99 364.8 202 95.5
LjContig00446g0016600 Lotus japonicus HOM05D003517 ORTHO05D009794 4.5e-99 364.8 202 95.5
Sp3g25610 Schrenkiella parvula HOM05D003517 ORTHO05D009794 7.7e-99 364.0 198 97.5
Lj2P1233T102 Lonicera japonica HOM05D003517 ORTHO05D009794 1.0e-98 363.6 202 96.0
Lj2P1236T75 Lonicera japonica HOM05D003517 ORTHO05D009794 1.0e-98 363.6 202 96.0
Peaxi162Scf00456g00032 Petunia axillaris HOM05D003517 ORTHO05D009794 1.3e-98 363.2 202 95.5
Lalb_Chr00c21g0406031 Lupinus albus HOM05D003517 ORTHO05D009794 5.0e-98 361.3 202 94.6
Lalb_Chr00c39g0409031 Lupinus albus HOM05D003517 ORTHO05D009794 5.0e-98 361.3 202 94.6
Lalb_Chr00c39g0409211 Lupinus albus HOM05D003517 ORTHO05D009794 5.0e-98 361.3 202 94.6
Lalb_Chr00c51g0413121 Lupinus albus HOM05D003517 ORTHO05D009794 5.0e-98 361.3 202 94.6
HanXRQChr00c0234g0572741 Helianthus annuus HOM05D003517 ORTHO05D009794 8.5e-98 360.5 205 94.6
HanXRQMTg0579471 Helianthus annuus HOM05D003517 ORTHO05D009794 8.5e-98 360.5 205 94.6
Glyma.08G301000 Glycine max HOM05D003517 ORTHO05D009794 1.1e-97 360.1 200 96.0
Nn003s41395 Nelumbo nucifera HOM05D003517 ORTHO05D009794 3.2e-97 358.6 202 94.6
Nn1g09965 Nelumbo nucifera HOM05D003517 ORTHO05D009794 3.2e-97 358.6 202 94.6
Nn1g10124 Nelumbo nucifera HOM05D003517 ORTHO05D009794 3.2e-97 358.6 202 94.6
DCAR_032460 Daucus carota HOM05D003517 ORTHO05D009794 4.2e-97 358.2 202 95.0
arahy.Tifrunner.gnm1.ann1.8GMV2Y Arachis hypogaea HOM05D003517 ORTHO05D009794 7.2e-97 357.5 200 95.5
Gorai.001G168000 Gossypium raimondii HOM05D003517 ORTHO05D009794 1.6e-96 356.3 204 94.6
Aqoxy38s018 Aquilegia oxysepala HOM05D003517 ORTHO05D009794 4.7e-96 354.8 202 93.6
Gohir.A03G108600 Gossypium hirsutum HOM05D003517 ORTHO05D009794 8.0e-96 354.0 204 94.1
SHI35306 Sapria himalayana HOM05D003517 ORTHO05D009794 2.4e-92 342.4 204 90.2
SHI49089 Sapria himalayana HOM05D003517 ORTHO05D009794 2.4e-92 342.4 204 90.2
SHI53309 Sapria himalayana HOM05D003517 ORTHO05D009794 7.0e-92 340.9 204 89.7
Nitab4.5_0000172g1090 Nicotiana tabacum HOM05D003517 ORTHO05D009794 2.7e-91 339.0 202 89.1
CSS0025973 Camellia sinensis var. sinensis HOM05D003517 ORTHO05D009794 1.3e-90 336.7 183 97.3
CAN.G1.11 Capsicum annuum HOM05D003517 ORTHO05D009794 2.2e-90 335.9 202 88.6
Nitab4.5_0000172g0300 Nicotiana tabacum HOM05D003517 ORTHO05D009794 8.5e-90 334.0 202 87.1
MBI05_g05356_MAGBIO Magnolia biondii HOM05D003517 ORTHO05D009794 3.6e-88 328.6 197 89.3
Nitab4.5_0003784g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 1.4e-87 326.6 202 86.6
HanXRQChr02g0049481 Helianthus annuus HOM05D003517 ORTHO05D009794 2.3e-87 325.9 190 92.1
HanXRQChr01g0013411 Helianthus annuus HOM05D003517 ORTHO05D009794 2.8e-85 318.9 176 96.6
Gohir.A08G086024 Gossypium hirsutum HOM05D003517 ORTHO05D009794 3.5e-83 312.0 205 82.9
Nitab4.5_0010559g0050 Nicotiana tabacum HOM05D003517 ORTHO05D009798 4.7e-80 301.6 202 83.7
LjContig00315g0004708 Lotus japonicus HOM05D003517 ORTHO05D009794 8.0e-80 300.8 197 84.3
arahy.Tifrunner.gnm1.ann1.N584HR Arachis hypogaea HOM05D003517 ORTHO05D009794 6.8e-79 297.7 200 83.5
SabraMtG0003300 Salix brachista HOM05D003517 ORTHO05D009794 1.6e-75 286.6 157 94.9
Nitab4.5_0000172g0410 Nicotiana tabacum HOM05D003517 ORTHO05D009794 4.3e-73 278.5 200 80.0
Nitab4.5_0003945g0090 Nicotiana tabacum HOM05D003517 ORTHO05D009794 1.1e-68 263.8 176 83.5
HanXRQChr09g0237761 Helianthus annuus HOM05D003517 ORTHO05D009794 1.6e-67 260.0 140 97.1
CDE02G3221 Ceratophyllum demersum HOM05D003517 ORTHO05D009794 2.0e-67 259.6 148 92.6
unitig_0.g2040 Utricularia gibba HOM05D003517 ORTHO05D009794 1.7e-66 256.5 149 91.3
CsaV3_UNG208670 Cucumis sativus L. HOM05D003517 ORTHO05D009794 5.2e-63 245.0 130 98.5
RhsimMtG0007100 Rhododendron simsii HOM05D003517 ORTHO05D009794 1.4e-60 236.9 130 96.9
Nitab4.5_0001152g0960 Nicotiana tabacum HOM05D003517 ORTHO05D009794 6.0e-59 231.5 148 82.4
TPR.G40594 Trifolium pratense HOM05D003517 ORTHO05D009794 1.9e-57 226.5 124 96.0
HanXRQChr05g0138851 Helianthus annuus HOM05D003517 ORTHO05D009794 4.9e-53 211.8 117 94.9
Pp3c12_12240 Physcomitrium patens HOM05D003517 ORTHO05D009794 1.9e-52 209.9 193 63.7
Sp5g20260 Schrenkiella parvula HOM05D003517 ORTHO05D009794 1.5e-49 200.3 197 64.0
BraSC159t45725Z Brassica rapa HOM05D003517 ORTHO05D009794 1.2e-46 190.7 103 98.1
Aa31csc798G10 Aethionema arabicum HOM05D003517 ORTHO05D009794 7.8e-43 177.9 115 84.3
Lj2P92T86 Lonicera japonica HOM05D003517 ORTHO05D009794 1.9e-41 173.3 100 90.0
Nitab4.5_0001152g0030 Nicotiana tabacum HOM05D003517 ORTHO05D009794 1.2e-38 164.1 184 59.2
Actinidia34878 Actinidia chinensis HOM05D003517 ORTHO05D009794 6.4e-37 158.3 95 93.7
Ca_03783_v3 Cicer arietinum L. HOM05D009973 ORTHO05D009794 3.2e-36 156.0 89 95.5
VMungo0985G0003 Vigna mungo HOM05D003517 ORTHO05D009794 4.2e-36 155.6 88 96.6
Thhalv10029192m.g Eutrema salsugineum HOM05D003517 ORTHO05D009794 3.6e-32 142.5 80 92.5
Nitab4.5_0001127g0280 Nicotiana tabacum HOM05D003517 ORTHO05D009794 9.9e-30 134.4 175 54.3
TPR.G39738 Trifolium pratense HOM05D003517 ORTHO05D009794 1.0e-26 124.4 67 97.0
CiPaw.05G081600 Carya illinoinensis HOM05D003517 ORTHO05D009794 1.3e-26 124.0 93 74.2
Solyc10g045730.1 Solanum lycopersicum HOM05D003517 ORTHO05D009794 5.1e-26 122.1 131 61.1
Nitab4.5_0001152g0550 Nicotiana tabacum HOM05D003517 ORTHO05D009794 5.8e-22 108.6 64 81.2
Lsat_1_v5_gn_5_95761 Lactuca sativa HOM05D002069 ORTHO05D009794 2.2e-21 106.7 57 86.0
Solyc11g030930.3 Solanum lycopersicum HOM05D003517 ORTHO05D009794 3.8e-21 105.9 61 88.5
Aqoxy12s041 Aquilegia oxysepala HOM05D003517 ORTHO05D009794 1.6e-19 100.5 71 85.9
HanXRQChr05g0138841 Helianthus annuus HOM05D003517 ORTHO05D009794 3.9e-18 95.9 57 93.0
Nitab4.5_0001152g0290 Nicotiana tabacum HOM05D003517 ORTHO05D009794 5.7e-17 92.0 63 82.5
SGA_v2.0_scaffold400G50848 Striga asiatica HOM05D003517 ORTHO05D009794 1.6e-16 90.5 64 76.6
SalBow1G3342 Salvia bowleyana HOM05D002965 ORTHO05D010536 5.8e-14 82.0 44 97.7
Psat0s1454g0040 Pisum sativum HOM05D003517 ORTHO05D009794 1.0e-13 81.3 89 61.8
HanXRQChr05g0138831 Helianthus annuus HOM05D003517 ORTHO05D009794 4.2e-12 75.9 37 100.0
HanXRQChr05g0138811 Helianthus annuus HOM05D003517 ORTHO05D009794 3.5e-11 72.8 37 97.3
HanXRQChr05g0138821 Helianthus annuus HOM05D003517 ORTHO05D009794 3.5e-11 72.8 37 97.3
Lj2C1230G62 Lonicera japonica HOM05D014754 ORTHO05D009794 3.7e-08 62.8 40 85.0
CARHR282960 Cardamine hirsuta HOM05D014754 ORTHO05D017434 5.3e-07 58.9 34 91.2
AT2G07718 Arabidopsis thaliana HOM05D014754 ORTHO05D017434 2.6e-06 56.6 72 51.4
ATMG00590 Arabidopsis thaliana HOM05D014754 ORTHO05D017434 2.6e-06 56.6 72 51.4


User provided reference genes

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