Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0015867 Sechium edule HOM05D004165 ORTHO05D005063 0.0e+00 6467.5 3234 100.0
ClCG01G015940 Citrullus lanatus HOM05D004165 ORTHO05D005063 0.0e+00 5506.8 3244 86.3
CsaV3_6G042210 Cucumis sativus L. HOM05D004165 ORTHO05D005063 0.0e+00 5467.9 3244 85.2
MELO3C007461.2 Cucumis melo HOM05D004165 ORTHO05D005063 0.0e+00 5422.1 3244 84.9
CiPaw.03G132500 Carya illinoinensis HOM05D004165 ORTHO05D005063 0.0e+00 3911.7 3270 63.3
Cfa002775 Carpinus fangiana HOM05D004165 ORTHO05D005063 0.0e+00 3889.0 3258 63.6
Prupe.6G168600 Prunus persica HOM05D004165 ORTHO05D005063 0.0e+00 3784.6 3272 61.4
Dinv21242 Davidia involucrata HOM05D004165 ORTHO05D005063 0.0e+00 3694.4 3290 60.3
RcHm_v2.0_Chr2g0117761 Rosa chinensis HOM05D004165 ORTHO05D005063 0.0e+00 3684.4 3272 60.0
FvH4_1g23050 Fragaria vesca HOM05D004165 ORTHO05D005063 0.0e+00 3675.2 3273 59.9
FAN26G2965 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 3675.2 3273 59.8
Atru.chr4.460 Acer truncatum HOM05D004165 ORTHO05D005063 0.0e+00 3674.4 3298 59.4
FAN19G2841 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 3669.4 3273 59.8
FAN28G2110 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 3657.8 3274 59.7
Thecc.01G115900 Theobroma cacao HOM05D004165 ORTHO05D005063 0.0e+00 3652.8 3267 59.8
FAN23G0468 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 3652.1 3273 59.5
MD15G1330600 Malus domestica HOM05D004165 ORTHO05D005063 0.0e+00 3636.7 3261 59.4
Gohir.D12G093100 Gossypium hirsutum HOM05D004165 ORTHO05D005063 0.0e+00 3613.5 3259 59.2
Gorai.008G100800 Gossypium raimondii HOM05D004165 ORTHO05D005063 0.0e+00 3609.7 3271 59.1
Gohir.A12G083100 Gossypium hirsutum HOM05D004165 ORTHO05D005063 0.0e+00 3605.1 3259 59.2
Potri.007G078650 Populus trichocarpa HOM05D004165 ORTHO05D005063 0.0e+00 3585.8 3265 59.1
TAR628G1404 Trochodendron aralioides HOM05D004165 ORTHO05D005063 0.0e+00 3577.3 3290 58.5
Potri.005G086100 Populus trichocarpa HOM05D004165 ORTHO05D005063 0.0e+00 3567.7 3270 59.1
CANSAT01G1143 Cannabis sativa HOM05D004165 ORTHO05D005063 0.0e+00 3562.7 3264 59.0
Sabra05G0071000 Salix brachista HOM05D004165 ORTHO05D005063 0.0e+00 3553.8 3316 58.6
Ca_17683_v3 Cicer arietinum L. HOM05D004165 ORTHO05D005063 0.0e+00 3552.7 3277 58.0
CSS0013219 Camellia sinensis var. sinensis HOM05D004165 ORTHO05D005063 0.0e+00 3549.2 3294 58.6
Glyma.08G143200 Glycine max HOM05D004165 ORTHO05D005063 0.0e+00 3534.6 3277 57.9
Lj4g0014922 Lotus japonicus HOM05D004165 ORTHO05D005063 0.0e+00 3523.4 3268 57.8
Manes.12G144600 Manihot esculenta HOM05D004165 ORTHO05D005063 0.0e+00 3518.0 3266 58.4
Lalb_Chr13g0296271 Lupinus albus HOM05D004165 ORTHO05D005063 0.0e+00 3516.1 3269 58.0
Phvul.002G266300 Phaseolus vulgaris HOM05D004165 ORTHO05D005063 0.0e+00 3514.9 3274 58.0
TPR.G2248 Trifolium pratense HOM05D004165 ORTHO05D005063 0.0e+00 3497.2 3253 57.7
arahy.Tifrunner.gnm1.ann1.KAY7L7 Arachis hypogaea HOM05D004165 ORTHO05D005063 0.0e+00 3489.9 3271 57.8
arahy.Tifrunner.gnm1.ann1.F6TX6D Arachis hypogaea HOM05D004165 ORTHO05D005063 0.0e+00 3483.3 3271 57.7
Medtr8g092100 Medicago truncatula HOM05D004165 ORTHO05D005063 0.0e+00 3480.6 3271 57.5
Lj4C863G6 Lonicera japonica HOM05D004165 ORTHO05D005063 0.0e+00 3412.1 3263 56.9
Nn5g28841 Nelumbo nucifera HOM05D004165 ORTHO05D005063 0.0e+00 3412.1 3305 56.3
vmacro12886 Vaccinium macrocarpon HOM05D004165 ORTHO05D005063 0.0e+00 3353.1 3391 54.8
Duzib147G0774 Durio zibethinus HOM05D004165 ORTHO05D005063 0.0e+00 3350.1 3256 56.4
Actinidia28449 Actinidia chinensis HOM05D004165 ORTHO05D005063 0.0e+00 3348.9 3264 56.6
Glyma.05G185300 Glycine max HOM05D004165 ORTHO05D005063 0.0e+00 3344.3 2882 61.1
PGR004G2408 Punica granatum HOM05D004165 ORTHO05D005063 0.0e+00 3320.8 3291 55.8
Aqoxy5G02023 Aquilegia oxysepala HOM05D004165 ORTHO05D005063 0.0e+00 3256.5 3302 54.3
PSO210G1143 Papaver somniferum HOM05D004165 ORTHO05D005063 0.0e+00 3251.8 3293 54.1
PSO170G0015 Papaver somniferum HOM05D004165 ORTHO05D005063 0.0e+00 3234.5 3294 54.0
Sc03g0004750 Simmondsia chinensis HOM05D004165 ORTHO05D005063 0.0e+00 3199.1 3281 53.9
THA.LOC104804480 Tarenaya hassleriana HOM05D004165 ORTHO05D005063 0.0e+00 3196.8 3267 55.0
Cc07_g16560 Coffea canephora HOM05D004165 ORTHO05D005063 0.0e+00 3194.4 3329 53.5
CARHR247290 Cardamine hirsuta HOM05D004165 ORTHO05D005063 0.0e+00 3189.1 3265 54.3
AT4G39420 Arabidopsis thaliana HOM05D004165 ORTHO05D005063 0.0e+00 3176.3 3288 54.2
HanXRQChr08g0218061 Helianthus annuus HOM05D004165 ORTHO05D005063 0.0e+00 3155.2 3254 53.7
AL7G11450 Arabidopsis lyrata HOM05D004165 ORTHO05D005063 0.0e+00 3154.4 3279 53.7
Thhalv10024179m.g Eutrema salsugineum HOM05D004165 ORTHO05D005063 0.0e+00 3147.5 3279 53.7
Aa31LG6G15850 Aethionema arabicum HOM05D004165 ORTHO05D005063 0.0e+00 3145.9 3322 53.4
BolC1t00056H Brassica oleracea HOM05D004165 ORTHO05D005063 0.0e+00 3139.4 3261 53.5
Psat7g050200 Pisum sativum HOM05D004165 ORTHO05D005063 0.0e+00 3137.4 3031 56.2
Sopen04g022920 Solanum pennellii HOM05D004165 ORTHO05D005063 0.0e+00 3135.9 3284 53.1
C01p00530 Brassica napus HOM05D004165 ORTHO05D005063 0.0e+00 3134.4 3264 53.6
Carub.0007s0134 Capsella rubella HOM05D004165 ORTHO05D005063 0.0e+00 3134.4 3263 53.2
A01p00380 Brassica napus HOM05D004165 ORTHO05D005063 0.0e+00 3125.9 3264 53.4
MSTRG.23305 Avicennia marina HOM05D004165 ORTHO05D005063 0.0e+00 3122.8 3251 53.2
BraA01t00046Z Brassica rapa HOM05D004165 ORTHO05D005063 0.0e+00 3122.0 3269 53.4
Migut.H02450 Erythranthe guttata HOM05D004165 ORTHO05D005063 0.0e+00 3103.2 3269 53.1
Sp7g36440 Schrenkiella parvula HOM05D004165 ORTHO05D005063 0.0e+00 3087.4 3271 53.4
ECA233G2130 Erigeron canadensis HOM05D004165 ORTHO05D005063 0.0e+00 3069.3 3125 53.5
SalBow6G1439 Salvia bowleyana HOM05D004165 ORTHO05D005063 0.0e+00 3066.9 3287 52.5
EL10Ac6g15255 Beta vulgaris HOM05D004165 ORTHO05D005063 0.0e+00 3049.2 3305 52.0
ATR1120G060 Amborella trichopoda HOM05D004165 ORTHO05D005063 0.0e+00 2993.4 3322 51.1
Lsat_1_v5_gn_9_57180 Lactuca sativa HOM05D004165 ORTHO05D005063 0.0e+00 2993.4 3252 52.1
Solyc04g051570.4 Solanum lycopersicum HOM05D004165 ORTHO05D005063 0.0e+00 2884.0 2703 57.6
DCAR_016674 Daucus carota HOM05D004165 ORTHO05D005063 0.0e+00 2855.9 2446 61.2
Ciclev10024679m.g Citrus clementina HOM05D004165 ORTHO05D005063 0.0e+00 2774.2 3269 49.4
QL06p031619 Quercus lobata HOM05D004165 ORTHO05D005063 0.0e+00 2760.7 2022 70.7
Oeu054941.1 Olea europaea HOM05D004165 ORTHO05D005063 0.0e+00 2742.2 3119 50.1
SGA_v2.0_scaffold2G01283 Striga asiatica HOM05D004165 ORTHO05D005063 0.0e+00 2681.4 3023 50.5
Zm00001eb062420 Zea mays HOM05D004165 ORTHO05D005063 0.0e+00 2499.2 3282 45.5
Nitab4.5_0000184g0120 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 2465.3 3190 46.3
CDE07G1357 Ceratophyllum demersum HOM05D004165 ORTHO05D005063 0.0e+00 2406.3 2457 52.9
GSVIVG01022255001 Vitis vinifera HOM05D004165 ORTHO05D005063 0.0e+00 2213.0 1604 71.3
unitig_899.g14615 Utricularia gibba HOM05D004165 ORTHO05D005063 0.0e+00 2155.9 2576 48.7
Mapoly0066s0021 Marchantia polymorpha HOM05D004165 ORTHO05D005063 0.0e+00 2130.1 3377 40.4
Eucgr.I00310 Eucalyptus grandis HOM05D004165 ORTHO05D005063 0.0e+00 2099.7 1698 64.8
HPP92_013330 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 2087.4 1991 56.7
Nitab4.5_0009050g0020 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 1933.3 1505 67.6
Peaxi162Scf00702g00610 Petunia axillaris HOM05D004165 ORTHO05D005063 0.0e+00 1922.5 1467 68.3
AUR62003622 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1917.1 2432 46.0
Pp3c3_30110 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1875.5 3319 37.9
Pp3c10_13600 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1871.3 3321 37.5
AUR62017931 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1865.9 2457 45.1
Hma1.2p1_0134F.1_g061540 Hydrangea macrophylla HOM05D004165 ORTHO05D005063 0.0e+00 1862.0 1805 57.6
SEGI_01323 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 0.0e+00 1856.6 2831 41.9
Rhsim10G0147800 Rhododendron simsii HOM05D004165 ORTHO05D005063 0.0e+00 1833.2 1449 67.6
Pp3c7_14700 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1788.1 3518 35.6
Haze_25067 Corylus avellana HOM05D004165 ORTHO05D005063 0.0e+00 1492.6 1004 76.5
HPP92_013326 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 1378.2 2193 39.6
VMungo0251G1264 Vigna mungo HOM05D004165 ORTHO05D005063 0.0e+00 1350.5 1250 56.9
Haze_25068 Corylus avellana HOM05D004165 ORTHO05D005063 0.0e+00 1303.5 970 69.2
SMO116G0345 Selaginella moellendorffii HOM05D004165 ORTHO05D005063 0.0e+00 1258.4 1551 48.1
Nitab4.5_0009050g0010 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 1236.9 1768 41.9
HPP92_013327 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 1172.1 1001 62.2
AUR62017932 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1130.2 844 69.1
QL06p031599 Quercus lobata HOM05D004165 ORTHO05D005063 0.0e+00 1092.8 1503 43.8
MBI01_g36155_MAGBIO Magnolia biondii HOM05D004165 ORTHO05D005063 0.0e+00 1082.4 1557 42.6
AUR62003623 Chenopodium quinoa HOM05D004165 ORTHO05D005063 5.8e-310 1069.3 836 67.0
TPR.G2291 Trifolium pratense HOM05D004165 ORTHO05D005063 2.5e-297 1027.3 1138 53.8
SEGI_35182 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 2.3e-295 1020.8 939 59.9
CBR_g5608 Chara braunii HOM05D004165 ORTHO05D005063 2.0e-294 1017.7 3372 27.6
SEGI_21320 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 2.3e-290 1004.2 852 61.6
TPR.G2323 Trifolium pratense HOM05D004165 ORTHO05D005063 3.2e-284 983.8 1471 40.9
COL.COLO4_22364 Corchorus olitorius HOM05D004165 ORTHO05D005063 2.0e-254 884.8 890 52.5
GSVIVG01022256001 Vitis vinifera HOM05D004165 ORTHO05D005063 1.7e-240 838.6 753 57.9
Peaxi162Scf00702g00617 Petunia axillaris HOM05D004165 ORTHO05D005063 5.7e-201 707.2 1323 36.3
PGSC0003DMG402020957 Solanum tuberosum HOM05D004165 ORTHO05D005063 3.6e-195 688.0 441 78.0
Cpa.g.sc72.8 Carica papaya HOM05D004165 ORTHO05D005063 7.0e-191 673.7 410 82.4
Haze_25071 Corylus avellana HOM05D004165 ORTHO05D005063 9.9e-177 626.7 817 44.7
COL.COLO4_22365 Corchorus olitorius HOM05D004165 ORTHO05D005063 7.6e-153 547.4 815 41.0
VMungo0251G0498 Vigna mungo HOM05D004165 ORTHO05D005063 5.4e-151 541.2 947 37.7
AagrBONN_evm.TU.Sc2ySwM_344.5499 Anthoceros agrestis HOM05D004165 ORTHO05D005063 3.1e-146 525.4 606 47.9
GSVIVG01022257001 Vitis vinifera HOM05D004165 ORTHO05D005063 2.7e-134 485.7 862 36.9
Peaxi162Scf00702g00611 Petunia axillaris HOM05D004165 ORTHO05D005063 8.7e-133 480.7 462 55.4
Os01g0182900 Oryza sativa ssp. japonica HOM05D004165 ORTHO05D005063 4.5e-121 441.8 327 67.6
Haze_25069 Corylus avellana HOM05D004165 ORTHO05D005063 3.2e-119 435.6 410 56.8
Dinv05635 Davidia involucrata HOM05D004165 ORTHO05D005063 8.8e-117 427.6 819 37.6
CAN.G1044.6 Capsicum annuum HOM05D004165 ORTHO05D005063 4.5e-113 415.2 270 74.4
COL.COLO4_22363 Corchorus olitorius HOM05D004165 ORTHO05D005063 6.7e-109 401.4 250 77.2
Psat4g052480 Pisum sativum HOM05D004165 ORTHO05D005063 6.7e-109 401.4 569 43.9
Cpa.g.sc72.12 Carica papaya HOM05D004165 ORTHO05D005063 1.1e-106 394.0 576 43.4
CAN.G1044.9 Capsicum annuum HOM05D004165 ORTHO05D005063 2.7e-102 379.4 827 32.8
Cpa.g.sc72.10 Carica papaya HOM05D004165 ORTHO05D005063 3.4e-100 372.5 299 63.5
Psat4g052520 Pisum sativum HOM05D004165 ORTHO05D005063 2.9e-96 359.4 377 53.8
SHI11781 Sapria himalayana HOM05D004165 ORTHO05D005063 1.5e-95 357.1 906 31.5
DCAR_016673 Daucus carota HOM05D004165 ORTHO05D005063 3.2e-95 355.9 822 32.8
Psat0s5282g0080 Pisum sativum HOM05D004165 ORTHO05D005063 8.3e-91 341.3 217 78.8
SHI11797 Sapria himalayana HOM05D004165 ORTHO05D005063 3.8e-88 332.4 244 64.3
SHI11786 Sapria himalayana HOM05D004165 ORTHO05D005063 1.1e-87 330.9 458 39.3
Cpa.g.sc72.14 Carica papaya HOM05D004165 ORTHO05D005063 2.1e-86 326.6 245 64.1
CAN.G1044.7 Capsicum annuum HOM05D004165 ORTHO05D005063 1.1e-82 314.3 415 43.6
SEGI_28584 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 1.3e-75 290.8 308 53.6
CDE07G1151 Ceratophyllum demersum HOM05D004165 ORTHO05D005063 1.7e-75 290.4 831 29.0
Oeu054940.1 Olea europaea HOM05D004165 ORTHO05D005063 5.0e-72 278.9 672 31.8
Cpa.g.sc72.15 Carica papaya HOM05D004165 ORTHO05D005063 4.3e-71 275.8 364 44.8
SHI11791 Sapria himalayana HOM05D004165 ORTHO05D005063 1.3e-67 264.2 293 50.5
SHI11792 Sapria himalayana HOM05D004165 ORTHO05D005063 3.7e-67 262.7 325 46.8
SHI11785 Sapria himalayana HOM05D004165 ORTHO05D005063 3.4e-60 239.6 423 38.1
TAR629G2775 Trochodendron aralioides HOM05D004165 ORTHO05D005063 1.7e-56 227.3 813 26.8
SEGI_28346 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 1.2e-54 221.1 968 27.2
Cpa.g.sc72.11 Carica papaya HOM05D004165 ORTHO05D005063 1.4e-53 217.6 155 71.0
SMO116G0288 Selaginella moellendorffii HOM05D004165 ORTHO05D005063 2.7e-49 203.4 413 35.1
SHI11788 Sapria himalayana HOM05D004165 ORTHO05D005063 6.6e-48 198.7 196 55.6
AagrBONN_evm.TU.Sc2ySwM_344.5500 Anthoceros agrestis HOM05D004165 ORTHO05D005063 2.5e-47 196.8 712 25.7
Os01g0182832 Oryza sativa ssp. japonica HOM05D004165 ORTHO05D005063 3.1e-45 189.9 726 27.4
SHI11794 Sapria himalayana HOM05D004165 ORTHO05D005063 2.7e-33 150.2 118 65.3
arahy.Tifrunner.gnm1.ann1.SA1CMP Arachis hypogaea HOM05D004165 ORTHO05D023735 2.5e-26 127.1 163 46.6
Dinv05989 Davidia involucrata HOM05D004165 ORTHO05D005063 2.7e-25 123.6 82 73.2
Psat5g190880 Pisum sativum HOM05D004165 ORTHO05D326560 3.0e-24 120.2 91 64.8
PGSC0003DMG401020957 Solanum tuberosum HOM05D004165 ORTHO05D005063 1.3e-22 114.8 108 50.9
SHI11789 Sapria himalayana HOM05D004165 ORTHO05D005063 2.1e-22 114.0 125 49.6
Psat0ss6263g0080 Pisum sativum HOM05D004165 ORTHO05D005166 1.4e-21 111.3 109 56.9
Psat5g077040 Pisum sativum HOM05D004628 ORTHO05D005166 1.4e-21 111.3 127 52.0
Psat0ss6263g0240 Pisum sativum HOM05D004165 ORTHO05D005166 9.0e-21 108.6 95 61.1
Dinv05988 Davidia involucrata HOM05D004165 ORTHO05D005063 1.3e-19 104.8 75 66.7
TPR.G35587 Trifolium pratense HOM05D004165 ORTHO05D005063 8.2e-14 85.5 70 64.3
PGSC0003DMG400026832 Solanum tuberosum HOM05D004165 ORTHO05D005063 9.0e-13 82.0 94 42.6
Sabra16G0108800 Salix brachista HOM05D000241 ORTHO05D001001 7.7e-12 79.0 60 61.7
Cpa.g.c46795 Carica papaya HOM05D004165 ORTHO05D005063 4.2e-10 73.2 56 69.6
Lsat_1_v5_gn_1_66781 Lactuca sativa HOM05D000921 ORTHO05D002852 7.2e-10 72.4 148 31.8
Lsat_1_v5_gn_3_81660 Lactuca sativa HOM05D000921 ORTHO05D002852 7.2e-10 72.4 55 63.6
SHI11793 Sapria himalayana HOM05D004165 ORTHO05D005063 2.1e-09 70.9 45 77.8
Lsat_1_v5_gn_9_124480 Lactuca sativa HOM05D001159 ORTHO05D001712 7.9e-09 68.9 54 59.3
Lsat_1_v5_gn_3_124661 Lactuca sativa HOM05D004165 ORTHO05D232501 2.0e-07 64.3 55 56.4


User provided reference genes

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