Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0015818 Sechium edule HOM05D007435 ORTHO05D009338 1.0e-67 260.0 140 100.0
ClCG01G007560 Citrullus lanatus HOM05D007435 ORTHO05D009338 4.6e-47 191.4 131 78.6
CsaV3_5G024570 Cucumis sativus L. HOM05D007435 ORTHO05D009338 1.9e-40 169.5 131 72.5
MELO3C005141.2 Cucumis melo HOM05D007435 ORTHO05D009338 3.2e-40 168.7 131 71.0
TAR369G0027 Trochodendron aralioides HOM05D007435 ORTHO05D009338 6.7e-22 107.8 112 58.0
Cpa.g.sc197.17 Carica papaya HOM05D007435 ORTHO05D009338 1.1e-21 107.1 139 50.4
MD07G1027000 Malus domestica HOM05D007435 ORTHO05D009338 1.5e-21 106.7 120 54.2
TAR065G0004 Trochodendron aralioides HOM05D007435 ORTHO05D009338 1.9e-21 106.3 103 60.2
Dinv32059 Davidia involucrata HOM05D007435 ORTHO05D009338 2.1e-20 102.8 85 62.4
Actinidia21528 Actinidia chinensis HOM05D007435 ORTHO05D009338 6.2e-20 101.3 85 60.0
Haze_03106 Corylus avellana HOM05D007435 ORTHO05D009338 8.1e-20 100.9 128 48.4
MD02G1297000 Malus domestica HOM05D007435 ORTHO05D009338 1.4e-19 100.1 120 52.5
AUR62026808 Chenopodium quinoa HOM05D007435 ORTHO05D009338 2.4e-19 99.4 111 57.7
Rhsim05G0126700 Rhododendron simsii HOM05D007435 ORTHO05D009338 2.4e-19 99.4 120 50.8
RcHm_v2.0_Chr1g0319401 Rosa chinensis HOM05D007435 ORTHO05D009338 2.4e-19 99.4 132 47.7
Prupe.2G027100 Prunus persica HOM05D007435 ORTHO05D009338 3.1e-19 99.0 118 52.5
CiPaw.13G009600 Carya illinoinensis HOM05D007435 ORTHO05D009338 5.3e-19 98.2 135 45.2
Actinidia02252 Actinidia chinensis HOM05D007435 ORTHO05D009338 1.2e-18 97.1 85 56.5
Dinv03572 Davidia involucrata HOM05D007435 ORTHO05D009338 1.2e-18 97.1 85 58.8
Dinv05039 Davidia involucrata HOM05D007435 ORTHO05D009338 1.2e-18 97.1 85 58.8
Sc10g0004150 Simmondsia chinensis HOM05D007435 ORTHO05D009338 1.5e-18 96.7 132 47.7
CSS0019859 Camellia sinensis var. sinensis HOM05D007435 ORTHO05D009338 2.0e-18 96.3 113 53.1
AUR62037244 Chenopodium quinoa HOM05D007435 ORTHO05D009338 2.0e-18 96.3 114 52.6
Ah.10g030920 Amaranthus hybridus HOM05D007435 ORTHO05D009338 3.4e-18 95.5 104 57.7
TWI63G0886 Tripterygium wilfordii HOM05D007435 ORTHO05D009338 3.4e-18 95.5 148 45.9
Cfa010840 Carpinus fangiana HOM05D007435 ORTHO05D009338 1.0e-17 94.0 128 46.9
Eucgr.G03266 Eucalyptus grandis HOM05D007435 ORTHO05D009338 1.3e-17 93.6 141 51.1
Lj3g0014273 Lotus japonicus HOM05D007435 ORTHO05D009338 3.8e-17 92.0 134 44.8
Nn7g36439 Nelumbo nucifera HOM05D007435 ORTHO05D009338 6.5e-17 91.3 118 50.8
PGSC0003DMG401006753 Solanum tuberosum HOM05D007435 ORTHO05D009338 8.4e-17 90.9 90 51.1
SGA_v2.0_scaffold354G49740 Striga asiatica HOM05D007435 ORTHO05D009338 8.4e-17 90.9 102 51.0
PSO339G5565 Papaver somniferum HOM05D007435 ORTHO05D009338 1.9e-16 89.7 84 54.8
Solyc01g068190.3 Solanum lycopersicum HOM05D007435 ORTHO05D009338 1.9e-16 89.7 90 50.0
Sopen01g030130 Solanum pennellii HOM05D007435 ORTHO05D009338 1.9e-16 89.7 90 50.0
PGR031G0502 Punica granatum HOM05D007435 ORTHO05D009338 3.2e-16 89.0 139 48.2
Aa31LG2G18760 Aethionema arabicum HOM05D007435 ORTHO05D009338 4.2e-16 88.6 86 58.1
COL.COLO4_19345 Corchorus olitorius HOM05D007435 ORTHO05D009338 4.2e-16 88.6 137 46.0
Nitab4.5_0000316g0230 Nicotiana tabacum HOM05D002000 ORTHO05D002027 4.2e-16 88.6 93 53.8
Peaxi162Scf00087g00129 Petunia axillaris HOM05D007435 ORTHO05D009338 4.2e-16 88.6 125 47.2
SalBow6G1324 Salvia bowleyana HOM05D007435 ORTHO05D009338 4.2e-16 88.6 92 55.4
CANSAT80G0490 Cannabis sativa HOM05D007435 ORTHO05D009338 5.5e-16 88.2 123 44.7
FvH4_7g02100 Fragaria vesca HOM05D007435 ORTHO05D009338 5.5e-16 88.2 140 45.0
FAN03G1772 Fragaria x ananassa HOM05D007435 ORTHO05D009338 5.5e-16 88.2 115 49.6
Nitab4.5_0001775g0080 Nicotiana tabacum HOM05D007435 ORTHO05D009338 9.3e-16 87.4 91 53.8
DCAR_009211 Daucus carota HOM05D007435 ORTHO05D009338 1.6e-15 86.7 109 51.4
THA.LOC104826709 Tarenaya hassleriana HOM05D007435 ORTHO05D009338 1.6e-15 86.7 130 47.7
Thecc.10G004500 Theobroma cacao HOM05D007435 ORTHO05D009338 2.7e-15 85.9 145 46.9
unitig_578.g16053 Utricularia gibba HOM05D007435 ORTHO05D009338 2.7e-15 85.9 86 52.3
Hma1.2p1_0269F.1_g107800 Hydrangea macrophylla HOM05D007435 ORTHO05D009338 3.5e-15 85.5 164 39.6
ATR0006G035 Amborella trichopoda HOM05D007435 ORTHO05D009338 4.6e-15 85.1 88 55.7
MBI13_g04786_MAGBIO Magnolia biondii HOM05D007435 ORTHO05D009338 6.0e-15 84.7 126 42.9
Manes.11G002100 Manihot esculenta HOM05D007435 ORTHO05D009338 6.0e-15 84.7 125 44.8
AL343U10010 Arabidopsis lyrata HOM05D007435 ORTHO05D009338 1.0e-14 84.0 133 42.9
Glyma.11G149600 Glycine max HOM05D007435 ORTHO05D009338 1.3e-14 83.6 114 46.5
Medtr3g023160 Medicago truncatula HOM05D007435 ORTHO05D009338 1.3e-14 83.6 128 44.5
HanXRQChr01g0020861 Helianthus annuus HOM05D007435 ORTHO05D009338 3.9e-14 82.0 88 48.9
Lsat_1_v5_gn_1_100400 Lactuca sativa HOM05D007435 ORTHO05D009338 3.9e-14 82.0 97 48.5
Carub.0007s0901 Capsella rubella HOM05D007435 ORTHO05D009338 8.7e-14 80.9 132 39.4
Duzib128G0703 Durio zibethinus HOM05D007435 ORTHO05D009338 8.7e-14 80.9 123 47.2
QL04p013057 Quercus lobata HOM05D007435 ORTHO05D009338 1.1e-13 80.5 144 43.8
QL04p012434 Quercus lobata HOM05D007435 ORTHO05D009338 1.9e-13 79.7 162 40.7
AT4G31560 Arabidopsis thaliana HOM05D007435 ORTHO05D009338 4.3e-13 78.6 133 39.8
Lalb_Chr25g0282731 Lupinus albus HOM05D007435 ORTHO05D009338 5.7e-13 78.2 162 38.3
CARHR239440 Cardamine hirsuta HOM05D007435 ORTHO05D009338 7.4e-13 77.8 127 44.1
A01p06670 Brassica napus HOM05D005366 ORTHO05D006323 1.6e-12 76.6 86 51.2
Duzib114G0226 Durio zibethinus HOM05D007435 ORTHO05D009338 2.1e-12 76.3 135 40.7
Psat5g213320 Pisum sativum HOM05D007435 ORTHO05D009338 2.8e-12 75.9 140 37.9
Ciclev10032994m.g Citrus clementina HOM05D007435 ORTHO05D009338 3.7e-12 75.5 109 44.0
Thhalv10026511m.g Eutrema salsugineum HOM05D007435 ORTHO05D009338 3.7e-12 75.5 85 50.6
C01p07440 Brassica napus HOM05D007435 ORTHO05D009338 6.3e-12 74.7 86 50.0
BolC1t00726H Brassica oleracea HOM05D007435 ORTHO05D009338 6.3e-12 74.7 86 50.0
BraA01t00625Z Brassica rapa HOM05D005366 ORTHO05D006323 6.3e-12 74.7 85 50.6
Gohir.D10G251200 Gossypium hirsutum HOM05D007435 ORTHO05D009338 6.3e-12 74.7 90 45.6
Gorai.011G291600 Gossypium raimondii HOM05D007435 ORTHO05D009338 6.3e-12 74.7 90 45.6
Potri.001G022500 Populus trichocarpa HOM05D007435 ORTHO05D009338 6.3e-12 74.7 141 40.4
arahy.Tifrunner.gnm1.ann1.4Y0UDN Arachis hypogaea HOM05D007435 ORTHO05D009338 8.2e-12 74.3 104 41.3
Gohir.A10G239300 Gossypium hirsutum HOM05D007435 ORTHO05D009338 8.2e-12 74.3 91 47.3
BcaC09g51937 Brassica carinata HOM05D007435 ORTHO05D009338 1.8e-11 73.2 85 49.4
Sp7g29390 Schrenkiella parvula HOM05D007435 ORTHO05D009338 1.8e-11 73.2 131 38.9
ECA248G3437 Erigeron canadensis HOM05D000002 ORTHO05D000001 3.1e-11 72.4 87 46.0
A03p60860 Brassica napus HOM05D007435 ORTHO05D009338 4.1e-11 72.0 88 47.7
BraA03t15122Z Brassica rapa HOM05D007435 ORTHO05D009338 4.1e-11 72.0 88 47.7
Migut.N01821 Erythranthe guttata HOM05D007435 ORTHO05D009338 6.9e-11 71.2 139 39.6
arahy.Tifrunner.gnm1.ann1.KRJM02 Arachis hypogaea HOM05D007435 ORTHO05D009338 9.0e-11 70.9 108 39.8
BcaNung01514 Brassica carinata HOM05D007435 ORTHO05D009338 9.0e-11 70.9 83 49.4
Phvul.005G033400 Phaseolus vulgaris HOM05D007435 ORTHO05D009338 9.0e-11 70.9 146 37.7
C07p58750 Brassica napus HOM05D007435 ORTHO05D009338 1.2e-10 70.5 83 49.4
BolC7t46323H Brassica oleracea HOM05D007435 ORTHO05D009338 1.2e-10 70.5 83 49.4
BcaNung04129 Brassica carinata HOM05D007435 ORTHO05D009338 1.5e-10 70.1 139 42.4
CDE08G0963 Ceratophyllum demersum HOM05D000584 ORTHO05D009338 1.0e-09 67.4 138 38.4
Aqoxy1G00332 Aquilegia oxysepala HOM05D007435 ORTHO05D009338 1.7e-09 66.6 79 49.4
Hund13323 Selenicereus undatus HOM05D000185 ORTHO05D000105 2.9e-09 65.9 92 52.2
HPP92_025000 Vanilla planifolia HOM05D007435 ORTHO05D009338 1.4e-08 63.5 164 34.1
CDE06G1029 Ceratophyllum demersum HOM05D007435 ORTHO05D009338 7.2e-08 61.2 136 33.8
Sabra01G0016900 Salix brachista HOM05D007435 ORTHO05D009338 1.2e-07 60.5 85 42.4
Atru.chr11.2511 Acer truncatum HOM05D007435 ORTHO05D009338 2.7e-07 59.3 145 38.6
Zm00001eb363190 Zea mays HOM05D007435 ORTHO05D009338 2.7e-07 59.3 103 38.8
Haze_19805 Corylus avellana HOM05D007435 ORTHO05D009338 4.6e-07 58.5 77 48.1
Os01g0940600 Oryza sativa ssp. japonica HOM05D007435 ORTHO05D009338 1.0e-06 57.4 92 41.3
Ca_27018_v3 Cicer arietinum L. HOM05D007435 ORTHO05D009338 1.3e-06 57.0 87 47.1
Glyma.04G142000 Glycine max HOM05D007435 ORTHO05D009338 1.8e-06 56.6 87 41.4
VMungo1080G0635 Vigna mungo HOM05D007435 ORTHO05D009338 3.0e-06 55.8 132 32.6
Zm00001eb141550 Zea mays HOM05D007435 ORTHO05D009338 8.7e-06 54.3 109 36.7


User provided reference genes

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