Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0015753 Sechium edule HOM05D004603 ORTHO05D005244 5.0e-120 434.5 223 100.0
Sed0010230 Sechium edule HOM05D004603 ORTHO05D005244 2.2e-88 329.3 222 79.3
MELO3C012448.2 Cucumis melo HOM05D004603 ORTHO05D005244 4.4e-84 315.1 220 75.5
CsaV3_5G036510 Cucumis sativus L. HOM05D004603 ORTHO05D005244 1.1e-82 310.5 219 74.9
ClCG05G020790 Citrullus lanatus HOM05D004603 ORTHO05D005244 2.3e-77 292.7 304 56.9
GSVIVG01022405001 Vitis vinifera HOM05D004603 ORTHO05D005244 2.5e-55 219.5 219 54.8
FAN06G0782 Fragaria x ananassa HOM05D000001 ORTHO05D009083 9.5e-55 217.6 218 54.1
FAN03G3254 Fragaria x ananassa HOM05D004603 ORTHO05D005244 8.1e-54 214.5 218 54.1
Haze_03089 Corylus avellana HOM05D004603 ORTHO05D005244 2.3e-53 213.0 215 55.3
Cpa.g.sc197.6 Carica papaya HOM05D004603 ORTHO05D005244 3.4e-52 209.1 223 52.0
Gohir.D04G071400 Gossypium hirsutum HOM05D004603 ORTHO05D005244 3.4e-52 209.1 216 51.9
Cfa010862 Carpinus fangiana HOM05D004603 ORTHO05D005244 5.8e-52 208.4 215 54.4
Gorai.012G080400 Gossypium raimondii HOM05D004603 ORTHO05D005244 5.8e-52 208.4 216 51.9
QL04p013733 Quercus lobata HOM05D004603 ORTHO05D005244 9.8e-52 207.6 220 52.3
COL.COLO4_25832 Corchorus olitorius HOM05D004603 ORTHO05D005244 2.9e-51 206.1 218 50.9
Dinv32050 Davidia involucrata HOM05D004603 ORTHO05D005244 1.1e-50 204.1 220 51.8
Duzib114G1022 Durio zibethinus HOM05D004603 ORTHO05D005244 1.4e-50 203.8 222 50.9
Potri.003G201500 Populus trichocarpa HOM05D004603 ORTHO05D005244 1.4e-50 203.8 217 53.9
Thecc.10G006000 Theobroma cacao HOM05D004603 ORTHO05D005244 3.2e-50 202.6 223 51.6
CANSAT35G1099 Cannabis sativa HOM05D004603 ORTHO05D005244 5.4e-50 201.8 224 51.3
RcHm_v2.0_Chr1g0319701 Rosa chinensis HOM05D004603 ORTHO05D005244 5.4e-50 201.8 216 54.2
Lalb_Chr19g0138841 Lupinus albus HOM05D004603 ORTHO05D005244 9.2e-50 201.1 218 52.8
CiPaw.14G006000 Carya illinoinensis HOM05D004603 ORTHO05D005244 1.6e-49 200.3 220 50.9
TAR369G0595 Trochodendron aralioides HOM05D004603 ORTHO05D005244 6.0e-49 198.4 223 49.8
Atru.chr11.2495 Acer truncatum HOM05D004603 ORTHO05D005244 1.7e-48 196.8 217 53.9
Ciclev10032728m.g Citrus clementina HOM05D004603 ORTHO05D005244 3.0e-48 196.1 216 50.9
Sabra01G0018000 Salix brachista HOM05D004603 ORTHO05D005244 3.9e-48 195.7 216 51.9
Potri.001G024000 Populus trichocarpa HOM05D004603 ORTHO05D005244 6.6e-48 194.9 216 51.9
Atru.chr11.2466 Acer truncatum HOM05D004603 ORTHO05D005244 1.5e-47 193.7 217 53.0
Ca_14312_v3 Cicer arietinum L. HOM05D004603 ORTHO05D005244 1.9e-47 193.4 221 50.2
Glyma.11G113600 Glycine max HOM05D004603 ORTHO05D005244 5.6e-47 191.8 216 52.8
Phvul.010G125900 Phaseolus vulgaris HOM05D004603 ORTHO05D005244 9.5e-47 191.0 216 51.4
Ca_20912_v3 Cicer arietinum L. HOM05D004603 ORTHO05D005244 1.2e-46 190.7 214 51.4
FAN01G0231 Fragaria x ananassa HOM05D000001 ORTHO05D009083 1.2e-46 190.7 181 55.8
FAN10G0154 Fragaria x ananassa HOM05D004603 ORTHO05D005244 1.2e-46 190.7 181 55.8
COL.COLO4_29439 Corchorus olitorius HOM05D004603 ORTHO05D005244 2.8e-46 189.5 210 50.0
Hma1.2p1_0902F.1_g234830 Hydrangea macrophylla HOM05D004603 ORTHO05D005244 2.8e-46 189.5 215 49.3
MD00G1188600 Malus domestica HOM05D004603 ORTHO05D005244 4.7e-46 188.7 216 49.1
PGR031G2747 Punica granatum HOM05D004603 ORTHO05D005244 8.1e-46 188.0 214 50.0
TWI38G0287 Tripterygium wilfordii HOM05D004603 ORTHO05D005244 8.1e-46 188.0 221 48.4
Manes.11G002700 Manihot esculenta HOM05D004603 ORTHO05D005244 1.1e-45 187.6 215 48.8
Eucgr.G03257 Eucalyptus grandis HOM05D004603 ORTHO05D005244 1.4e-45 187.2 216 48.1
Glyma.12G039500 Glycine max HOM05D004603 ORTHO05D005244 1.4e-45 187.2 218 51.4
Duzib128G1390 Durio zibethinus HOM05D004603 ORTHO05D005244 1.8e-45 186.8 223 46.2
MD02G1294600 Malus domestica HOM05D004603 ORTHO05D005244 3.1e-45 186.0 216 49.5
Prupe.2G029400 Prunus persica HOM05D004603 ORTHO05D005244 5.2e-45 185.3 221 52.0
arahy.Tifrunner.gnm1.ann1.S7XKIQ Arachis hypogaea HOM05D004603 ORTHO05D005244 6.8e-45 184.9 214 49.1
TAR053G0004 Trochodendron aralioides HOM05D004603 ORTHO05D005244 6.8e-45 184.9 219 49.8
VMungo1127G1982 Vigna mungo HOM05D004603 ORTHO05D005244 6.8e-45 184.9 216 49.5
DCAR_031824 Daucus carota HOM05D004603 ORTHO05D005244 1.5e-44 183.7 212 47.6
TWI63G1183 Tripterygium wilfordii HOM05D004603 ORTHO05D005244 1.5e-44 183.7 216 51.4
Lj9A646T46 Lonicera japonica HOM05D004603 ORTHO05D005244 3.4e-44 182.6 230 45.2
Psat7g182960 Pisum sativum HOM05D004603 ORTHO05D005244 5.8e-44 181.8 217 49.3
arahy.Tifrunner.gnm1.ann1.30UV9I Arachis hypogaea HOM05D004603 ORTHO05D005244 7.6e-44 181.4 214 48.1
Medtr4g071040 Medicago truncatula HOM05D004603 ORTHO05D005244 9.9e-44 181.0 215 50.2
Rhsim07G0062700 Rhododendron simsii HOM05D004603 ORTHO05D005244 9.9e-44 181.0 217 45.6
VMungo1127G0155 Vigna mungo HOM05D004603 ORTHO05D005244 1.7e-43 180.3 216 49.1
arahy.Tifrunner.gnm1.ann1.FEA8VP Arachis hypogaea HOM05D004603 ORTHO05D005244 2.2e-43 179.9 214 47.7
vmacro13728 Vaccinium macrocarpon HOM05D004603 ORTHO05D005244 2.2e-43 179.9 217 45.6
SGA_v2.0_scaffold119G32802 Striga asiatica HOM05D004603 ORTHO05D005244 2.4e-42 176.4 213 47.4
Nitab4.5_0000316g0040 Nicotiana tabacum HOM05D004603 ORTHO05D005244 3.2e-42 176.0 216 45.8
Nitab4.5_0013777g0030 Nicotiana tabacum HOM05D004603 ORTHO05D005244 5.4e-42 175.3 215 45.1
Lj1A1244T16 Lonicera japonica HOM05D004603 ORTHO05D005244 2.1e-41 173.3 178 48.9
TPR.G3881 Trifolium pratense HOM05D004603 ORTHO05D005244 2.1e-41 173.3 172 52.9
DCAR_009134 Daucus carota HOM05D004603 ORTHO05D005244 4.6e-41 172.2 214 45.3
Actinidia30721 Actinidia chinensis HOM05D004603 ORTHO05D005244 6.0e-41 171.8 174 52.9
CAN.G745.15 Capsicum annuum HOM05D004603 ORTHO05D005244 6.0e-41 171.8 214 44.9
Lj3g0020788 Lotus japonicus HOM05D004603 ORTHO05D005244 1.0e-40 171.0 215 47.4
Aqoxy2G00300 Aquilegia oxysepala HOM05D004603 ORTHO05D005244 3.9e-40 169.1 217 46.5
DCAR_024211 Daucus carota HOM05D004603 ORTHO05D005244 3.9e-40 169.1 214 45.3
THA.LOC104819124 Tarenaya hassleriana HOM05D004603 ORTHO05D005244 3.9e-40 169.1 233 46.8
Peaxi162Scf00047g02136 Petunia axillaris HOM05D004603 ORTHO05D005244 5.1e-40 168.7 211 46.0
SalBow5G1211 Salvia bowleyana HOM05D004603 ORTHO05D005244 1.9e-39 166.8 218 45.4
CiPaw.13G010800 Carya illinoinensis HOM05D004603 ORTHO05D005244 3.3e-39 166.0 172 51.2
Migut.B01205 Erythranthe guttata HOM05D004603 ORTHO05D005244 1.6e-38 163.7 216 45.8
Aa31LG6G8480 Aethionema arabicum HOM05D004603 ORTHO05D005244 2.1e-38 163.3 223 43.5
ECA248G3322 Erigeron canadensis HOM05D004603 ORTHO05D005244 2.1e-38 163.3 218 43.6
HanXRQChr15g0493861 Helianthus annuus HOM05D004603 ORTHO05D005244 2.1e-38 163.3 212 43.9
SalBow1G4372 Salvia bowleyana HOM05D004603 ORTHO05D005244 2.8e-38 162.9 215 45.1
SalBow5G1267 Salvia bowleyana HOM05D004603 ORTHO05D005244 4.7e-38 162.2 218 45.0
TPR.G30506 Trifolium pratense HOM05D004603 ORTHO05D005244 4.0e-37 159.1 219 44.3
Sopen01g030410 Solanum pennellii HOM05D004603 ORTHO05D005244 6.9e-37 158.3 222 42.8
Solyc01g068450.4 Solanum lycopersicum HOM05D004603 ORTHO05D005244 9.9e-36 154.5 222 41.4
Cc02_g29120 Coffea canephora HOM05D004603 ORTHO05D005244 1.3e-35 154.1 214 40.7
Peaxi162Scf00309g00324 Petunia axillaris HOM05D004603 ORTHO05D005244 3.8e-35 152.5 171 49.7
BolC8t47853H Brassica oleracea HOM05D000499 ORTHO05D002825 1.4e-34 150.6 215 42.8
MBI13_g05166_MAGBIO Magnolia biondii HOM05D004603 ORTHO05D005244 2.4e-34 149.8 131 60.3
BcaC07g37535 Brassica carinata HOM05D004603 ORTHO05D005244 5.4e-34 148.7 220 41.4
PGSC0003DMG400023243 Solanum tuberosum HOM05D004603 ORTHO05D005244 1.6e-33 147.1 168 48.2
MSTRG.20534 Avicennia marina HOM05D004603 ORTHO05D005244 1.0e-32 144.4 175 47.4
BraA08t32841Z Brassica rapa HOM05D000499 ORTHO05D002825 5.1e-32 142.1 212 41.5
AL1G49060 Arabidopsis lyrata HOM05D004603 ORTHO05D005244 6.6e-32 141.7 214 40.2
Carub.0001s3260 Capsella rubella HOM05D004603 ORTHO05D005244 8.7e-32 141.4 210 41.4
A08p08230 Brassica napus HOM05D000499 ORTHO05D002825 2.5e-31 139.8 217 39.6
Carub.0007s3712 Capsella rubella HOM05D004603 ORTHO05D005244 2.5e-31 139.8 204 40.2
HPP92_010478 Vanilla planifolia HOM05D004603 ORTHO05D005244 4.3e-31 139.0 152 46.7
BcaB04g17864 Brassica carinata HOM05D004603 ORTHO05D005244 5.6e-31 138.7 215 40.0
AT1G34570 Arabidopsis thaliana HOM05D004603 ORTHO05D005244 6.2e-30 135.2 211 40.3
MD07G1031900 Malus domestica HOM05D004603 ORTHO05D005244 1.1e-29 134.4 141 51.8
Hund13330 Selenicereus undatus HOM05D004603 ORTHO05D005244 1.8e-29 133.7 184 44.0
Ciclev10017990m.g Citrus clementina HOM05D004603 ORTHO05D005244 2.4e-29 133.3 165 44.2
CDE08G1561 Ceratophyllum demersum HOM05D004603 ORTHO05D005244 9.0e-29 131.3 130 51.5
BcaC08g43772 Brassica carinata HOM05D004603 ORTHO05D005244 1.5e-28 130.6 213 36.6
Thhalv10009671m.g Eutrema salsugineum HOM05D004603 ORTHO05D005244 1.5e-28 130.6 152 48.0
Ah.12g065100 Amaranthus hybridus HOM05D004603 ORTHO05D005244 2.0e-28 130.2 173 41.0
AT3G15750 Arabidopsis thaliana HOM05D004603 ORTHO05D005244 2.6e-28 129.8 171 46.2
Atru.chr11.786 Acer truncatum HOM05D004603 ORTHO05D005244 5.8e-28 128.6 140 52.1
EL10Ac2g02852 Beta vulgaris HOM05D004603 ORTHO05D005244 9.9e-28 127.9 200 40.0
Sp1g29690 Schrenkiella parvula HOM05D004603 ORTHO05D005244 1.3e-27 127.5 199 39.2
Actinidia21527 Actinidia chinensis HOM05D004603 ORTHO05D005244 2.2e-27 126.7 222 38.7
PSO017G3894 Papaver somniferum HOM05D004603 ORTHO05D005244 2.9e-27 126.3 179 46.4
unitig_26.g8818 Utricularia gibba HOM05D004414 ORTHO05D005244 2.9e-27 126.3 183 37.2
CSS0012283 Camellia sinensis var. sinensis HOM05D004603 ORTHO05D005244 4.9e-27 125.6 141 48.9
CSS0050281 Camellia sinensis var. sinensis HOM05D004603 ORTHO05D005244 6.4e-27 125.2 141 48.9
RcHm_v2.0_Chr7g0218601 Rosa chinensis HOM05D004603 ORTHO05D005244 8.4e-27 124.8 119 56.3
BcaB07g33112 Brassica carinata HOM05D004603 ORTHO05D005244 1.4e-26 124.0 188 38.8
C06p11480 Brassica napus HOM05D004603 ORTHO05D005244 1.9e-26 123.6 169 39.1
AUR62026828 Chenopodium quinoa HOM05D004603 ORTHO05D005244 2.4e-26 123.2 170 43.5
AL7G44820 Arabidopsis lyrata HOM05D004603 ORTHO05D005244 9.3e-26 121.3 185 40.5
Sc10g0004260 Simmondsia chinensis HOM05D004603 ORTHO05D005244 9.3e-26 121.3 180 40.0
AUR62037226 Chenopodium quinoa HOM05D004603 ORTHO05D005244 1.2e-25 120.9 194 39.7
PSO528G0152 Papaver somniferum HOM05D004603 ORTHO05D005244 2.7e-25 119.8 184 41.3
Lj2g0001718 Lotus japonicus HOM05D004603 ORTHO05D005244 4.6e-25 119.0 172 44.2
PSO063G4454 Papaver somniferum HOM05D004603 ORTHO05D005244 4.6e-25 119.0 157 45.2
SEGI_29054 Sequoiadendron giganteum HOM05D004603 ORTHO05D005244 7.9e-25 118.2 141 46.1
HanXRQChr13g0394011 Helianthus annuus HOM05D004603 ORTHO05D005244 1.3e-24 117.5 135 45.2
Sp7g17090 Schrenkiella parvula HOM05D004603 ORTHO05D005244 1.3e-24 117.5 150 44.7
PSO170G0256 Papaver somniferum HOM05D004603 ORTHO05D005244 2.3e-24 116.7 186 41.9
SEGI_15222 Sequoiadendron giganteum HOM05D004603 ORTHO05D005244 5.1e-24 115.5 141 44.7
Os01g0950800 Oryza sativa ssp. japonica HOM05D004603 ORTHO05D005244 6.7e-24 115.2 161 41.6
Os10g0580500 Oryza sativa ssp. japonica HOM05D004603 ORTHO05D005244 8.7e-24 114.8 136 45.6
CAN.G1571.2 Capsicum annuum HOM05D004603 ORTHO05D005244 2.5e-23 113.2 118 49.2
FvH4_5g29020 Fragaria vesca HOM05D004603 ORTHO05D005244 4.3e-23 112.5 85 61.2
FAN18G3634 Fragaria x ananassa HOM05D004603 ORTHO05D005244 3.6e-22 109.4 81 61.7
Oeu062071.1 Olea europaea HOM05D004603 ORTHO05D005244 6.2e-22 108.6 131 46.6
FAN13G2986 Fragaria x ananassa HOM05D004603 ORTHO05D005244 2.4e-21 106.7 125 49.6
Gohir.A05G333100 Gossypium hirsutum HOM05D004603 ORTHO05D005244 2.0e-20 103.6 129 43.4
Lsat_1_v5_gn_1_97861 Lactuca sativa HOM05D004603 ORTHO05D005244 2.0e-20 103.6 86 58.1
Mapoly0122s0047 Marchantia polymorpha HOM05D004603 ORTHO05D005244 2.6e-20 103.2 158 38.0
CARHR033890 Cardamine hirsuta HOM05D004603 ORTHO05D005244 2.2e-19 100.1 212 34.0
Pp3c5_22730 Physcomitrium patens HOM05D004603 ORTHO05D005244 6.4e-19 98.6 195 33.3
ATR0721G140 Amborella trichopoda HOM05D004603 ORTHO05D005244 1.1e-18 97.8 139 40.3
CDE09G0498 Ceratophyllum demersum HOM05D002215 ORTHO05D002238 7.1e-18 95.1 77 58.4
ECA248G0603 Erigeron canadensis HOM05D004603 ORTHO05D005244 3.0e-16 89.7 85 56.5
FvH4_3g19550 Fragaria vesca HOM05D004603 ORTHO05D005244 3.9e-16 89.4 87 52.9
FAN11G0237 Fragaria x ananassa HOM05D004603 ORTHO05D005244 3.9e-16 89.4 87 52.9
MBI13_g05162_MAGBIO Magnolia biondii HOM05D004603 ORTHO05D005244 8.7e-16 88.2 186 35.5
ATR0217G019 Amborella trichopoda HOM05D004603 ORTHO05D005244 5.6e-15 85.5 146 37.0
Zm00001eb140990 Zea mays HOM05D004603 ORTHO05D005244 7.4e-15 85.1 176 31.8
Zm00001eb363050 Zea mays HOM05D004603 ORTHO05D005244 7.4e-15 85.1 146 35.6
FAN08G2679 Fragaria x ananassa HOM05D004603 ORTHO05D005244 2.8e-14 83.2 240 32.9
SHI03956 Sapria himalayana HOM05D005973 ORTHO05D007285 4.8e-14 82.4 72 52.8
AagrBONN_evm.TU.Sc2ySwM_117.3931 Anthoceros agrestis HOM05D004603 ORTHO05D005244 2.4e-13 80.1 113 38.1
QL02p069618 Quercus lobata HOM05D004603 ORTHO05D005244 2.5e-10 70.1 104 44.2
CBR_g23146 Chara braunii HOM05D004542 ORTHO05D005380 1.2e-09 67.8 68 45.6
A01p20230 Brassica napus HOM05D017989 ORTHO05D021787 2.1e-09 67.0 94 41.5
Cre09.g388245 Chlamydomonas reinhardtii HOM05D004603 ORTHO05D005244 5.1e-08 62.4 62 43.5
SMO170G0061 Selaginella moellendorffii HOM05D004603 ORTHO05D005244 8.7e-08 61.6 131 28.2
SMO137G0333 Selaginella moellendorffii HOM05D004603 ORTHO05D005244 1.5e-07 60.8 119 30.3
AUR62017456 Chenopodium quinoa HOM05D004603 ORTHO05D005244 5.7e-07 58.9 111 38.7
Dinv31495 Davidia involucrata HOM05D004603 ORTHO05D005244 7.4e-07 58.5 73 43.8
Nn3g18490 Nelumbo nucifera HOM05D051960 ORTHO05D005244 1.6e-06 57.4 79 40.5
Aa31LG2G13200 Aethionema arabicum HOM05D000404 ORTHO05D001765 4.8e-06 55.8 41 53.7
Lj1C1244T2 Lonicera japonica HOM05D004603 ORTHO05D005244 4.8e-06 55.8 89 34.8
BraA09t38742Z Brassica rapa HOM05D000499 ORTHO05D002825 6.3e-06 55.5 96 32.3
Sabra03G0149000 Salix brachista HOM05D004603 ORTHO05D005244 8.2e-06 55.1 220 29.1


User provided reference genes

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