Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0015690 Sechium edule HOM05D006752 ORTHO05D008597 4.4e-212 741.1 379 100.0
ClCG06G010500 Citrullus lanatus HOM05D006752 ORTHO05D008597 1.0e-160 570.5 402 75.6
MELO3C025306.2 Cucumis melo HOM05D006752 ORTHO05D008597 3.1e-149 532.3 458 64.2
Prupe.7G235200 Prunus persica HOM05D006752 ORTHO05D008597 7.2e-106 388.3 402 52.0
CANSAT56G2958 Cannabis sativa HOM05D006752 ORTHO05D008597 2.0e-103 380.2 395 52.9
CSS0021299 Camellia sinensis var. sinensis HOM05D006752 ORTHO05D008597 1.8e-101 373.6 391 53.2
FAN28G1533 Fragaria x ananassa HOM05D006752 ORTHO05D008597 2.4e-101 373.2 407 50.9
Thecc.09G116900 Theobroma cacao HOM05D006752 ORTHO05D008597 2.4e-101 373.2 399 54.6
FAN26G3101 Fragaria x ananassa HOM05D006752 ORTHO05D008597 1.2e-100 370.9 407 51.1
FAN19G2061 Fragaria x ananassa HOM05D006752 ORTHO05D008597 2.0e-100 370.2 401 50.9
FvH4_1g04220 Fragaria vesca HOM05D006752 ORTHO05D008597 1.0e-99 367.9 401 50.4
Atru.chr7.1279 Acer truncatum HOM05D006752 ORTHO05D008597 2.9e-99 366.3 418 51.0
RcHm_v2.0_Chr2g0089761 Rosa chinensis HOM05D006752 ORTHO05D008597 5.0e-99 365.5 410 50.7
CiPaw.04G167500 Carya illinoinensis HOM05D006752 ORTHO05D008597 6.6e-99 365.2 458 46.1
MD02G1061400 Malus domestica HOM05D006752 ORTHO05D008597 2.5e-98 363.2 403 49.9
GSVIVG01015454001 Vitis vinifera HOM05D006752 ORTHO05D008597 3.3e-98 362.8 385 53.0
COL.COLO4_34948 Corchorus olitorius HOM05D006393 ORTHO05D008088 7.3e-98 361.7 375 55.5
Haze_25667 Corylus avellana HOM05D006752 ORTHO05D008597 7.3e-98 361.7 372 53.8
Rhsim01G0090500 Rhododendron simsii HOM05D006752 ORTHO05D008597 3.1e-96 356.3 401 51.4
arahy.Tifrunner.gnm1.ann1.CJP391 Arachis hypogaea HOM05D006752 ORTHO05D008597 2.9e-94 349.7 401 51.1
Dinv41564 Davidia involucrata HOM05D006752 ORTHO05D008088 1.4e-93 347.4 365 52.3
Duzib168G0331 Durio zibethinus HOM05D006752 ORTHO05D008597 2.4e-93 346.7 397 51.9
Gorai.010G068100 Gossypium raimondii HOM05D006752 ORTHO05D008597 4.1e-93 345.9 398 52.0
Gohir.D06G058000 Gossypium hirsutum HOM05D006752 ORTHO05D008597 7.0e-93 345.1 398 51.5
Actinidia20330 Actinidia chinensis HOM05D006752 ORTHO05D008597 1.2e-92 344.4 398 50.5
Glyma.06G211500 Glycine max HOM05D006752 ORTHO05D008597 1.6e-92 344.0 408 50.7
QL02p086379 Quercus lobata HOM05D006752 ORTHO05D008597 1.6e-92 344.0 536 40.1
arahy.Tifrunner.gnm1.ann1.TG1F9L Arachis hypogaea HOM05D006752 ORTHO05D008597 3.5e-92 342.8 417 49.2
Gohir.A06G059800 Gossypium hirsutum HOM05D006752 ORTHO05D008597 7.8e-92 341.7 397 51.1
Solyc12g006710.3 Solanum lycopersicum HOM05D006752 ORTHO05D008597 7.8e-92 341.7 382 51.6
Lalb_Chr11g0071961 Lupinus albus HOM05D006752 ORTHO05D008597 1.0e-91 341.3 395 49.9
Sopen12g002660 Solanum pennellii HOM05D006752 ORTHO05D008597 1.0e-91 341.3 383 51.7
Lj1g0009545 Lotus japonicus HOM05D006752 ORTHO05D008597 3.0e-91 339.7 446 47.3
vmacro20678 Vaccinium macrocarpon HOM05D006752 ORTHO05D008597 3.0e-91 339.7 379 52.5
Nn8g39294 Nelumbo nucifera HOM05D006752 ORTHO05D008597 6.6e-91 338.6 393 49.4
Nitab4.5_0001164g0060 Nicotiana tabacum HOM05D006752 ORTHO05D008597 6.6e-91 338.6 387 53.0
PGR142G0135 Punica granatum HOM05D006752 ORTHO05D008597 8.6e-91 338.2 407 50.6
Manes.03G066500 Manihot esculenta HOM05D006752 ORTHO05D008597 1.1e-90 337.8 447 45.9
Nitab4.5_0005520g0050 Nicotiana tabacum HOM05D006752 ORTHO05D008597 1.1e-90 337.8 382 51.8
CsaV3_1G030960 Cucumis sativus L. HOM05D006752 ORTHO05D008597 7.3e-90 335.1 259 71.8
PGSC0003DMG400020684 Solanum tuberosum HOM05D006752 ORTHO05D008597 1.2e-89 334.3 391 51.4
Medtr2g050180 Medicago truncatula HOM05D006752 ORTHO05D008597 2.8e-89 333.2 401 48.4
TAR383G0518 Trochodendron aralioides HOM05D004738 ORTHO05D006439 2.3e-88 330.1 391 48.6
Eucgr.C01084 Eucalyptus grandis HOM05D006752 ORTHO05D008597 4.0e-88 329.3 389 49.6
CAN.G377.33 Capsicum annuum HOM05D006752 ORTHO05D008597 6.8e-88 328.6 389 51.7
VMungo1309G1199 Vigna mungo HOM05D006752 ORTHO05D008597 1.5e-87 327.4 426 46.9
TPR.G10362 Trifolium pratense HOM05D006752 ORTHO05D008597 1.4e-85 320.9 399 46.9
Sc08g0007050 Simmondsia chinensis HOM05D006752 ORTHO05D008597 1.9e-85 320.5 393 47.8
Psat1g025400 Pisum sativum HOM05D006752 ORTHO05D008597 3.2e-85 319.7 400 47.8
HanXRQChr10g0317451 Helianthus annuus HOM05D006752 ORTHO05D008597 4.1e-85 319.3 388 44.6
Phvul.009G200000 Phaseolus vulgaris HOM05D006752 ORTHO05D008597 9.2e-85 318.2 419 46.1
DCAR_010437 Daucus carota HOM05D006752 ORTHO05D008597 2.1e-84 317.0 392 48.2
Potri.018G073100 Populus trichocarpa HOM05D006752 ORTHO05D008597 3.5e-84 316.2 464 43.8
TWI34G0637 Tripterygium wilfordii HOM05D006752 ORTHO05D008597 3.5e-84 316.2 373 48.5
ECA234G0120 Erigeron canadensis HOM05D006752 ORTHO05D008597 1.7e-83 313.9 404 45.0
Sabra18G0063600 Salix brachista HOM05D006752 ORTHO05D008597 8.6e-83 311.6 460 44.3
THA.LOC104815109 Tarenaya hassleriana HOM05D006752 ORTHO05D008597 2.1e-81 307.0 400 45.0
Hund09171 Selenicereus undatus HOM05D006752 ORTHO05D008597 3.6e-81 306.2 370 47.6
Ah.14g081300 Amaranthus hybridus HOM05D006752 ORTHO05D008597 1.1e-80 304.7 398 45.5
Peaxi162Scf00984g00260 Petunia axillaris HOM05D006752 ORTHO05D008597 1.2e-79 301.2 382 46.9
Aqoxy7G01881 Aquilegia oxysepala HOM05D006752 ORTHO05D008597 2.0e-79 300.4 387 46.0
Cpa.g.sc23.163 Carica papaya HOM05D006752 ORTHO05D008597 3.4e-79 299.7 418 44.3
Cc06_g09220 Coffea canephora HOM05D006752 ORTHO05D008597 2.9e-78 296.6 392 47.4
SGA_v2.0_scaffold229G43313 Striga asiatica HOM05D006752 ORTHO05D008597 3.2e-77 293.1 408 43.6
Os01g0178100 Oryza sativa ssp. japonica HOM05D006752 ORTHO05D008597 2.1e-76 290.4 394 48.5
EL10Ac8g18558 Beta vulgaris HOM05D006752 ORTHO05D008597 6.0e-76 288.9 388 46.1
MBI01_g13570_MAGBIO Magnolia biondii HOM05D006752 ORTHO05D008597 1.0e-75 288.1 454 41.4
Lj7C639G3 Lonicera japonica HOM05D006752 ORTHO05D008597 1.3e-75 287.7 436 42.0
Thhalv10013545m.g Eutrema salsugineum HOM05D006752 ORTHO05D008597 1.5e-74 284.3 403 43.4
PSO782G3782 Papaver somniferum HOM05D006752 ORTHO05D008597 1.9e-74 283.9 395 46.3
Carub.0006s1832 Capsella rubella HOM05D006752 ORTHO05D008597 7.3e-74 282.0 409 44.7
A10p19780 Brassica napus HOM05D006752 ORTHO05D008597 9.6e-74 281.6 402 42.8
BraA10t44054Z Brassica rapa HOM05D006752 ORTHO05D008597 9.6e-74 281.6 402 42.8
Sp6g24430 Schrenkiella parvula HOM05D006752 ORTHO05D008597 1.2e-73 281.2 404 44.1
BcaC04g19401 Brassica carinata HOM05D006752 ORTHO05D008597 1.6e-73 280.8 400 43.8
C09p56100 Brassica napus HOM05D006752 ORTHO05D008597 1.6e-73 280.8 400 43.8
Lsat_1_v5_gn_5_99240 Lactuca sativa HOM05D006752 ORTHO05D008597 2.1e-73 280.4 379 42.5
CARHR192900 Cardamine hirsuta HOM05D006752 ORTHO05D008597 3.6e-73 279.6 397 45.3
BolC9t58477H Brassica oleracea HOM05D006752 ORTHO05D008597 8.1e-73 278.5 400 43.5
CDE02G1475 Ceratophyllum demersum HOM05D006752 ORTHO05D008597 1.8e-72 277.3 335 46.9
AUR62033416 Chenopodium quinoa HOM05D006752 ORTHO05D008597 5.2e-72 275.8 393 43.8
AL6G31480 Arabidopsis lyrata HOM05D006752 ORTHO05D008597 7.6e-71 271.9 404 41.8
AT5G19950 Arabidopsis thaliana HOM05D006752 ORTHO05D008597 1.7e-70 270.8 402 42.3
ATR0815G047 Amborella trichopoda HOM05D006752 ORTHO05D008597 4.2e-69 266.2 410 42.2
SalBow6G5676 Salvia bowleyana HOM05D006752 ORTHO05D008597 1.6e-68 264.2 400 43.5
Aa31LG8G9350 Aethionema arabicum HOM05D006752 ORTHO05D008597 2.1e-68 263.8 384 42.4
Oeu018257.1 Olea europaea HOM05D006752 ORTHO05D008597 2.7e-68 263.5 351 47.6
BcaB08g36551 Brassica carinata HOM05D006752 ORTHO05D008597 6.0e-68 262.3 401 43.4
Migut.J01179 Erythranthe guttata HOM05D006752 ORTHO05D008597 3.0e-67 260.0 405 42.7
HPP92_008698 Vanilla planifolia HOM05D006752 ORTHO05D008597 2.5e-66 256.9 385 43.6
MSTRG.19609 Avicennia marina HOM05D006752 ORTHO05D008597 6.2e-65 252.3 414 41.5
Ca_05468_v3 Cicer arietinum L. HOM05D006752 ORTHO05D008597 5.3e-64 249.2 207 61.4
AUR62011040 Chenopodium quinoa HOM05D006393 ORTHO05D008088 2.6e-63 246.9 313 46.6
Hma1.2p1_0018F.1_g013060 Hydrangea macrophylla HOM05D006752 ORTHO05D008597 1.6e-57 227.6 188 60.1
Actinidia09396 Actinidia chinensis HOM05D006393 ORTHO05D008088 6.9e-56 222.2 384 40.6
Sc08g0007030 Simmondsia chinensis HOM05D006752 ORTHO05D008597 2.1e-49 200.7 193 50.8
SEGI_05783 Sequoiadendron giganteum HOM05D006752 ORTHO05D008597 2.5e-45 187.2 494 30.0
Pp3c9_1660 Physcomitrium patens HOM05D006752 ORTHO05D008597 4.5e-31 139.8 413 31.7
Pp3c9_1669 Physcomitrium patens HOM05D006752 ORTHO05D008597 4.5e-31 139.8 413 31.7
MD00G1026200 Malus domestica HOM05D006752 ORTHO05D008597 1.1e-29 135.2 183 40.4
Cc08_g07650 Coffea canephora HOM05D006752 ORTHO05D008597 1.9e-29 134.4 117 58.1
Mapoly0040s0028 Marchantia polymorpha HOM05D006752 ORTHO05D008597 1.6e-28 131.3 506 27.1
Zm00001eb336920 Zea mays HOM05D006752 ORTHO05D008597 1.0e-27 128.6 227 43.2
CSS0016306 Camellia sinensis var. sinensis HOM05D006752 ORTHO05D008597 1.3e-25 121.7 112 55.4
Ca_30697_v3 Cicer arietinum L. HOM05D006752 ORTHO05D008597 1.3e-22 111.7 114 55.3
MD02G1041600 Malus domestica HOM05D006752 ORTHO05D008597 2.1e-20 104.4 161 42.2
Sc08g0007040 Simmondsia chinensis HOM05D006752 ORTHO05D008597 7.9e-20 102.4 127 49.6
CSS0032277 Camellia sinensis var. sinensis HOM05D006752 ORTHO05D008597 2.0e-18 97.8 170 41.2
MD00G1027300 Malus domestica HOM05D006752 ORTHO05D008597 7.4e-18 95.9 70 62.9
CBR_g41660 Chara braunii HOM05D001740 ORTHO05D001468 1.7e-17 94.7 202 34.2
MD02G1038900 Malus domestica HOM05D006752 ORTHO05D008597 7.0e-16 89.4 131 40.5
MCO09G826 Micromonas commoda HOM05D006752 ORTHO05D008597 1.2e-15 88.6 179 37.4
MD02G1040800 Malus domestica HOM05D006752 ORTHO05D008597 1.9e-13 81.3 74 50.0
Cre16.g653000 Chlamydomonas reinhardtii HOM05D006752 ORTHO05D008597 2.5e-13 80.9 389 26.2
MD02G1041500 Malus domestica HOM05D006752 ORTHO05D008597 2.1e-12 77.8 75 49.3
MD02G1041100 Malus domestica HOM05D006752 ORTHO05D008597 7.5e-10 69.3 100 40.0
MD11G1046200 Malus domestica HOM05D006752 ORTHO05D008597 1.1e-08 65.5 62 51.6
Cre17.g712450 Chlamydomonas reinhardtii HOM05D005415 ORTHO05D006242 5.9e-07 59.7 154 30.5
MD02G1040400 Malus domestica HOM05D006752 ORTHO05D008597 1.0e-06 58.9 64 43.8
TWI32G0100 Tripterygium wilfordii HOM05D006752 ORTHO05D008597 2.9e-06 57.4 109 36.7


User provided reference genes

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