Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0015683 Sechium edule HOM05D004561 ORTHO05D005315 3.8e-148 528.1 260 100.0
MELO3C017214.2 Cucumis melo HOM05D004561 ORTHO05D005315 4.6e-117 424.9 258 82.2
CsaV3_1G002780 Cucumis sativus L. HOM05D004561 ORTHO05D005315 1.8e-113 412.9 258 80.2
ClCG06G015750 Citrullus lanatus HOM05D000113 ORTHO05D002571 7.1e-110 401.0 239 83.3
CiPaw.15G149700 Carya illinoinensis HOM05D004561 ORTHO05D005315 3.1e-105 385.6 258 70.5
GSVIVG01028605001 Vitis vinifera HOM05D004561 ORTHO05D005315 1.7e-103 379.8 258 70.5
Thecc.01G124300 Theobroma cacao HOM05D004561 ORTHO05D005315 4.9e-103 378.3 258 68.6
Potri.012G041700 Populus trichocarpa HOM05D004561 ORTHO05D005315 1.6e-101 373.2 260 68.8
QL09p040874 Quercus lobata HOM05D004561 ORTHO05D005315 1.6e-101 373.2 258 67.8
COL.COLO4_13996 Corchorus olitorius HOM05D004561 ORTHO05D005315 2.7e-101 372.5 258 68.2
CSS0045511 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 7.8e-101 370.9 258 69.8
Hma1.2p1_0018F.1_g012650 Hydrangea macrophylla HOM05D004561 ORTHO05D005315 2.3e-100 369.4 258 66.7
Prupe.5G069900 Prunus persica HOM05D004561 ORTHO05D005315 2.5e-99 365.9 261 67.0
Sabra12G0028700 Salix brachista HOM05D004561 ORTHO05D005315 5.6e-99 364.8 260 68.1
MSTRG.11225 Avicennia marina HOM05D004561 ORTHO05D005315 2.4e-97 359.4 258 65.5
Dinv14864 Davidia involucrata HOM05D004561 ORTHO05D005315 3.1e-97 359.0 258 67.1
Manes.08G062966 Manihot esculenta HOM05D004561 ORTHO05D005315 2.0e-96 356.3 258 66.7
Solyc08g074360.3 Solanum lycopersicum HOM05D004561 ORTHO05D005315 3.4e-96 355.5 258 65.5
Glyma.08G081300 Glycine max HOM05D004561 ORTHO05D005315 7.6e-96 354.4 259 64.5
Sopen08g023020 Solanum pennellii HOM05D004561 ORTHO05D005315 7.6e-96 354.4 258 65.9
TWI15G0666 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 1.7e-95 353.2 258 64.0
Gorai.012G033300 Gossypium raimondii HOM05D004561 ORTHO05D005315 2.9e-95 352.4 255 65.9
HanXRQChr15g0480201 Helianthus annuus HOM05D004561 ORTHO05D005315 2.9e-95 352.4 259 63.7
Gohir.D04G023500 Gossypium hirsutum HOM05D004561 ORTHO05D005315 1.4e-94 350.1 255 65.5
Gohir.A05G386400 Gossypium hirsutum HOM05D004561 ORTHO05D005315 1.9e-94 349.7 255 65.1
PGSC0003DMG400009224 Solanum tuberosum HOM05D004561 ORTHO05D005315 1.9e-94 349.7 258 64.7
TAR628G1415 Trochodendron aralioides HOM05D004561 ORTHO05D005315 2.4e-94 349.4 262 66.0
Ciclev10002226m.g Citrus clementina HOM05D004561 ORTHO05D005315 5.4e-94 348.2 258 64.7
TWI81G0190 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 9.3e-94 347.4 258 64.0
CAN.G370.25 Capsicum annuum HOM05D004561 ORTHO05D005315 1.6e-93 346.7 258 64.3
MSTRG.22847 Avicennia marina HOM05D004561 ORTHO05D005315 1.3e-92 343.6 258 62.0
Lj1A1185G61 Lonicera japonica HOM05D004561 ORTHO05D005315 1.8e-92 343.2 297 58.2
Solyc11g017400.2 Solanum lycopersicum HOM05D004561 ORTHO05D005315 1.8e-92 343.2 258 64.3
RcHm_v2.0_Chr7g0203331 Rosa chinensis HOM05D004561 ORTHO05D005315 2.3e-92 342.8 261 65.9
Atru.chr13.142 Acer truncatum HOM05D004561 ORTHO05D005315 3.0e-92 342.4 261 63.2
FAN08G3218 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.5e-91 340.1 261 63.6
Lj4g0004659 Lotus japonicus HOM05D004561 ORTHO05D005315 2.5e-91 339.3 255 62.7
Sc18g0002470 Simmondsia chinensis HOM05D004561 ORTHO05D005315 3.3e-91 339.0 258 61.6
FvH4_7g18930 Fragaria vesca HOM05D004561 ORTHO05D005315 4.3e-91 338.6 261 63.2
FAN06G3856 Fragaria x ananassa HOM05D004561 ORTHO05D005315 4.3e-91 338.6 261 63.2
Medtr4g094538 Medicago truncatula HOM05D004561 ORTHO05D005315 5.6e-91 338.2 255 62.7
Lalb_Chr12g0208781 Lupinus albus HOM05D004561 ORTHO05D005315 7.4e-91 337.8 258 61.6
SalBow3G1851 Salvia bowleyana HOM05D004561 ORTHO05D005315 9.6e-91 337.4 272 60.3
Eucgr.B03172 Eucalyptus grandis HOM05D004561 ORTHO05D005315 2.1e-90 336.3 256 60.9
FvH4_5g18940 Fragaria vesca HOM05D004561 ORTHO05D005315 4.8e-90 335.1 261 63.2
AL5G39820 Arabidopsis lyrata HOM05D004561 ORTHO05D005315 8.1e-90 334.3 259 61.0
Sp5g04590 Schrenkiella parvula HOM05D004561 ORTHO05D005315 8.1e-90 334.3 259 61.8
Peaxi162Scf00152g00158 Petunia axillaris HOM05D004561 ORTHO05D005315 1.1e-89 334.0 261 64.0
MD16G1270300 Malus domestica HOM05D004561 ORTHO05D005315 1.4e-89 333.6 220 68.6
FAN06G2746 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.8e-89 333.2 255 63.9
Lsat_1_v5_gn_7_30581 Lactuca sativa HOM05D004561 ORTHO05D005315 2.4e-89 332.8 262 61.5
Nn5g27375 Nelumbo nucifera HOM05D004561 ORTHO05D005315 4.0e-89 332.0 259 61.0
PSO210G6857 Papaver somniferum HOM05D004561 ORTHO05D005315 6.9e-89 331.3 255 62.0
Psat1g047920 Pisum sativum HOM05D004561 ORTHO05D005315 1.2e-88 330.5 255 61.6
PGSC0003DMG403029595 Solanum tuberosum HOM05D004561 ORTHO05D005315 1.2e-88 330.5 239 65.7
FAN04G2378 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.5e-88 330.1 252 63.9
Glyma.05G126500 Glycine max HOM05D004561 ORTHO05D005315 1.5e-88 330.1 280 57.5
BraA07t30043Z Brassica rapa HOM05D004561 ORTHO05D005315 3.4e-88 328.9 262 59.9
A07p23920 Brassica napus HOM05D004561 ORTHO05D005315 4.5e-88 328.6 258 60.1
TPR.G30372 Trifolium pratense HOM05D004561 ORTHO05D005315 5.8e-88 328.2 258 61.2
AT3G58130 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 9.9e-88 327.4 258 60.9
CARHR168490 Cardamine hirsuta HOM05D004561 ORTHO05D005315 9.9e-88 327.4 259 60.2
ECA233G0879 Erigeron canadensis HOM05D004561 ORTHO05D005315 1.3e-87 327.0 257 61.1
Nitab4.5_0000422g0080 Nicotiana tabacum HOM05D004561 ORTHO05D005315 1.3e-87 327.0 242 65.7
THA.LOC104822320 Tarenaya hassleriana HOM05D004561 ORTHO05D005315 1.3e-87 327.0 259 61.0
Hund26218 Selenicereus undatus HOM05D004561 ORTHO05D005315 1.7e-87 326.6 233 62.7
Carub.0005s2498 Capsella rubella HOM05D004561 ORTHO05D005315 6.4e-87 324.7 259 57.9
VMungo0251G0557 Vigna mungo HOM05D004561 ORTHO05D005315 8.4e-87 324.3 219 65.8
BolC6t37673H Brassica oleracea HOM05D004561 ORTHO05D005315 3.2e-86 322.4 258 59.3
Cc03_g07430 Coffea canephora HOM05D004561 ORTHO05D005315 9.3e-86 320.9 261 63.2
FAN13G2292 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.2e-85 320.5 207 69.1
FAN18G3337 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.2e-85 320.5 207 69.1
BcaB02g07548 Brassica carinata HOM05D004561 ORTHO05D005315 2.1e-85 319.7 282 55.7
Migut.I00621 Erythranthe guttata HOM05D004561 ORTHO05D005315 2.1e-85 319.7 258 58.9
Oeu031248.3 Olea europaea HOM05D004561 ORTHO05D005315 6.0e-85 318.2 290 56.6
Thhalv10002077m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 7.9e-85 317.8 261 58.2
AUR62010959 Chenopodium quinoa HOM05D004561 ORTHO05D005315 3.0e-84 315.8 238 62.6
vmacro18667 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 3.9e-84 315.5 325 52.3
AT2G27340 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 2.5e-83 312.8 255 60.0
Aqoxy6G01699 Aquilegia oxysepala HOM05D004561 ORTHO05D005315 7.4e-83 311.2 258 57.4
AUR62007426 Chenopodium quinoa HOM05D004561 ORTHO05D005315 9.6e-83 310.8 238 61.3
C06p25150 Brassica napus HOM05D004561 ORTHO05D005315 3.7e-82 308.9 300 52.3
Rhsim06G0237000 Rhododendron simsii HOM05D004561 ORTHO05D005315 6.2e-82 308.1 279 55.2
BcaC08g44900 Brassica carinata HOM05D004561 ORTHO05D005315 1.1e-81 307.4 258 57.0
Thhalv10002036m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 5.3e-81 305.1 259 57.9
SGA_v2.0_scaffold37G14646 Striga asiatica HOM05D004561 ORTHO05D005315 6.9e-81 304.7 236 62.3
Peaxi162Scf00310g00711 Petunia axillaris HOM05D004561 ORTHO05D005315 2.6e-80 302.8 234 65.0
Phvul.002G198500 Phaseolus vulgaris HOM05D004561 ORTHO05D005315 1.0e-79 300.8 201 67.2
CDE04G2633 Ceratophyllum demersum HOM05D004561 ORTHO05D005315 2.2e-79 299.7 217 61.3
Zm00001eb433850 Zea mays HOM05D004561 ORTHO05D005315 2.1e-77 293.1 263 55.1
EL10Ac8g18446 Beta vulgaris HOM05D004561 ORTHO05D005315 4.6e-77 292.0 255 57.6
AUR62021469 Chenopodium quinoa HOM05D004561 ORTHO05D005315 1.0e-76 290.8 211 64.5
C08p33660 Brassica napus HOM05D004561 ORTHO05D005315 1.6e-74 283.5 258 54.7
unitig_744.g24647 Utricularia gibba HOM05D004561 ORTHO05D005315 4.1e-73 278.9 273 51.6
Lj6g0005186 Lotus japonicus HOM05D004561 ORTHO05D005315 9.0e-73 277.7 220 59.5
Os04g0678800 Oryza sativa ssp. japonica HOM05D004561 ORTHO05D005315 9.0e-73 277.7 263 53.2
ATR0661G441 Amborella trichopoda HOM05D004561 ORTHO05D005315 3.8e-71 272.3 260 53.8
SalBow1G5912 Salvia bowleyana HOM05D004561 ORTHO05D005315 3.8e-71 272.3 200 64.0
SHI05351 Sapria himalayana HOM05D004561 ORTHO05D005315 7.9e-69 264.6 263 51.3
BcaC07g40276 Brassica carinata HOM05D004561 ORTHO05D005315 2.3e-68 263.1 225 56.0
Aa31LG10G12840 Aethionema arabicum HOM05D004561 ORTHO05D005315 8.7e-68 261.2 302 47.4
Sopen11g009350 Solanum pennellii HOM05D004561 ORTHO05D005315 8.7e-68 261.2 180 66.7
DCAR_002722 Daucus carota HOM05D004561 ORTHO05D005315 7.4e-67 258.1 183 64.5
arahy.Tifrunner.gnm1.ann1.AX2CN5 Arachis hypogaea HOM05D004561 ORTHO05D005315 6.9e-65 251.5 263 51.3
RcHm_v2.0_Chr7g0203411 Rosa chinensis HOM05D004561 ORTHO05D005315 5.9e-64 248.4 238 52.5
CAN.G1530.1 Capsicum annuum HOM05D004561 ORTHO05D005315 1.5e-59 233.8 186 61.3
FAN18G2677 Fragaria x ananassa HOM05D004561 ORTHO05D005315 9.7e-59 231.1 182 60.4
A09p50910 Brassica napus HOM05D004561 ORTHO05D005315 6.3e-58 228.4 240 49.6
vmacro21453 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 1.5e-56 223.8 197 56.9
Pp3c13_19470 Physcomitrium patens HOM05D004561 ORTHO05D005315 3.6e-53 212.6 212 46.2
BcaC07g40185 Brassica carinata HOM05D004561 ORTHO05D005315 7.9e-53 211.5 220 48.6
arahy.Tifrunner.gnm1.ann1.3X42ZC Arachis hypogaea HOM05D004561 ORTHO05D005315 3.9e-52 209.1 169 60.4
AagrBONN_evm.TU.Sc2ySwM_368.3407 Anthoceros agrestis HOM05D004561 ORTHO05D005315 1.1e-51 207.6 263 42.6
PSO761G0502 Papaver somniferum HOM05D004561 ORTHO05D005315 7.4e-51 204.9 168 60.7
AUR62002652 Chenopodium quinoa HOM05D004561 ORTHO05D005315 2.2e-50 203.4 221 48.4
HPP92_027560 Vanilla planifolia HOM05D004561 ORTHO05D005315 1.1e-49 201.1 192 52.1
Zm00001eb066050 Zea mays HOM05D004561 ORTHO05D005315 1.4e-49 200.7 189 52.4
BolC8t50963H Brassica oleracea HOM05D004561 ORTHO05D005315 3.1e-49 199.5 188 51.1
Carub.0339s0001 Capsella rubella HOM05D004561 ORTHO05D005315 1.3e-47 194.1 141 63.1
Haze_18936 Corylus avellana HOM05D004561 ORTHO05D005315 3.8e-47 192.6 167 58.1
ECA236G3170 Erigeron canadensis HOM05D004561 ORTHO05D005315 3.8e-47 192.6 141 58.9
CiPaw.16G098200 Carya illinoinensis HOM05D004561 ORTHO05D005315 2.5e-46 189.9 150 61.3
Nitab4.5_0000560g0110 Nicotiana tabacum HOM05D004561 ORTHO05D005315 4.2e-46 189.1 152 61.2
Mapoly0029s0047 Marchantia polymorpha HOM05D004561 ORTHO05D005315 7.2e-46 188.3 252 43.7
Sopen08g022960 Solanum pennellii HOM05D004561 ORTHO05D005315 9.7e-43 177.9 131 66.4
Cpa.g.sc437.1 Carica papaya HOM05D004561 ORTHO05D005315 2.2e-42 176.8 130 62.3
MCO09G807 Micromonas commoda HOM05D004561 ORTHO05D005315 1.5e-38 164.1 217 40.1
Hund02231 Selenicereus undatus HOM05D004561 ORTHO05D005315 9.4e-38 161.4 198 44.4
Carub.0008s0419 Capsella rubella HOM05D004561 ORTHO05D005315 4.0e-36 156.0 127 55.9
MD06G1059000 Malus domestica HOM05D004561 ORTHO05D005315 2.0e-35 153.7 110 63.6
CBR_g12600 Chara braunii HOM05D005240 ORTHO05D006471 1.4e-33 147.5 352 29.3
Hund26251 Selenicereus undatus HOM05D004561 ORTHO05D005315 2.4e-33 146.7 134 53.0
Sopen05g006540 Solanum pennellii HOM05D004561 ORTHO05D005315 5.9e-32 142.1 148 50.7
CSS0036958 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 1.0e-31 141.4 88 73.9
CSS0006634 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 5.0e-31 139.0 88 72.7
CSS0005948 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 6.5e-31 138.7 88 72.7
CSS0005045 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 8.6e-31 138.3 88 72.7
SalBow1G7315 Salvia bowleyana HOM05D004561 ORTHO05D005315 5.5e-30 135.6 239 37.7
Cre06.g300100 Chlamydomonas reinhardtii HOM05D004561 ORTHO05D005315 9.5e-30 134.8 256 32.8
SalBow1G4548 Salvia bowleyana HOM05D004561 ORTHO05D005315 9.8e-27 124.8 156 42.9
PRCOL_00001899 Prasinoderma coloniale HOM05D004561 ORTHO05D005315 1.3e-26 124.4 221 33.5
arahy.Tifrunner.gnm1.ann1.Y05SLV Arachis hypogaea HOM05D004561 ORTHO05D005315 1.2e-24 117.9 94 59.6
Solyc05g010730.3 Solanum lycopersicum HOM05D004561 ORTHO05D005315 1.1e-22 111.3 69 71.0
MBI08_g32523_MAGBIO Magnolia biondii HOM05D004561 ORTHO05D005315 4.7e-21 105.9 75 64.0
SalBow1G4039 Salvia bowleyana HOM05D004561 ORTHO05D005315 8.0e-21 105.1 67 65.7
SalBow1G5331 Salvia bowleyana HOM05D004561 ORTHO05D005315 1.0e-20 104.8 67 68.7
SalBow1G2796 Salvia bowleyana HOM05D004561 ORTHO05D005315 3.0e-20 103.2 67 67.2
SEGI_12631 Sequoiadendron giganteum HOM05D004561 ORTHO05D005315 2.6e-19 100.1 74 59.5
Nitab4.5_0013603g0010 Nicotiana tabacum HOM05D004561 ORTHO05D005315 9.8e-19 98.2 72 61.1
RcHm_v2.0_Chr7g0204241 Rosa chinensis HOM05D004561 ORTHO05D005315 4.9e-18 95.9 118 49.2
Cpa.g.c32558.1 Carica papaya HOM05D004561 ORTHO05D005315 8.3e-18 95.1 61 67.2
SalBow1G6765 Salvia bowleyana HOM05D004561 ORTHO05D005315 8.3e-18 95.1 82 57.3
RcHm_v2.0_Chr7g0204201 Rosa chinensis HOM05D004561 ORTHO05D005315 7.3e-14 82.0 84 56.0
SHI05852 Sapria himalayana HOM05D000002 ORTHO05D000001 4.7e-13 79.3 83 51.8
SalBow1G0427 Salvia bowleyana HOM05D006885 ORTHO05D008606 3.1e-12 76.6 59 61.0
SHI05337 Sapria himalayana HOM05D004561 ORTHO05D005315 5.8e-11 72.4 88 44.3
SalBow1G4445 Salvia bowleyana HOM05D025598 ORTHO05D005315 1.1e-09 68.2 69 52.2
FvH4_5g18980 Fragaria vesca HOM05D004561 ORTHO05D005315 1.6e-08 64.3 48 60.4
Cc05_g02560 Coffea canephora HOM05D004561 ORTHO05D005315 3.0e-07 60.1 75 46.7
Ca_17309_v3 Cicer arietinum L. HOM05D002967 ORTHO05D003281 5.0e-07 59.3 59 47.5
SHI05350 Sapria himalayana HOM05D004561 ORTHO05D005315 8.6e-07 58.5 137 29.2


User provided reference genes

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