Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0015662 Sechium edule HOM05D003086 ORTHO05D003347 1.1e-37 159.5 80 100.0
ClCG01G001890 Citrullus lanatus HOM05D003086 ORTHO05D003347 2.2e-22 108.6 85 72.9
MELO3C005750.2 Cucumis melo HOM05D003086 ORTHO05D003347 1.1e-21 106.3 84 71.4
Sed0027058 Sechium edule HOM05D003086 ORTHO05D003347 1.7e-17 92.4 82 64.6
CsaV3_5G002030 Cucumis sativus L. HOM05D003086 ORTHO05D003347 4.8e-17 90.9 79 64.6
Prupe.5G126200 Prunus persica HOM05D003086 ORTHO05D003347 1.0e-14 83.2 80 56.2
FAN13G3255 Fragaria x ananassa HOM05D003086 ORTHO05D003347 4.2e-13 77.8 81 53.1
FAN18G2695 Fragaria x ananassa HOM05D003086 ORTHO05D003347 1.6e-12 75.9 83 51.8
CiPaw.12G080100 Carya illinoinensis HOM05D003086 ORTHO05D003347 2.1e-12 75.5 81 55.6
Thecc.03G304600 Theobroma cacao HOM05D003086 ORTHO05D003347 2.7e-12 75.1 54 68.5
Manes.02G005600 Manihot esculenta HOM05D003086 ORTHO05D003347 3.6e-12 74.7 84 52.4
Thecc.03G304300 Theobroma cacao HOM05D003086 ORTHO05D003347 4.7e-12 74.3 54 68.5
FAN08G3604 Fragaria x ananassa HOM05D003086 ORTHO05D003347 8.0e-12 73.6 52 67.3
COL.COLO4_10758 Corchorus olitorius HOM05D003086 ORTHO05D003347 1.4e-11 72.8 54 63.0
Haze_09122 Corylus avellana HOM05D003086 ORTHO05D003347 1.4e-11 72.8 48 75.0
Gorai.004G131100 Gossypium raimondii HOM05D003086 ORTHO05D003347 1.8e-11 72.4 55 67.3
Gohir.A08G111400 Gossypium hirsutum HOM05D003086 ORTHO05D003347 3.0e-11 71.6 55 67.3
Gohir.D08G124400 Gossypium hirsutum HOM05D003086 ORTHO05D003347 3.0e-11 71.6 55 67.3
MD14G1134500 Malus domestica HOM05D003086 ORTHO05D003347 5.2e-11 70.9 51 72.5
FAN04G2505 Fragaria x ananassa HOM05D003086 ORTHO05D003347 6.7e-11 70.5 52 65.4
Cpa.g.sc1802.1 Carica papaya HOM05D003086 ORTHO05D003347 1.1e-10 69.7 54 68.5
FvH4_5g11470 Fragaria vesca HOM05D003086 ORTHO05D003347 2.0e-10 68.9 47 68.1
Lalb_Chr05g0223911 Lupinus albus HOM05D003086 ORTHO05D003347 2.6e-10 68.6 51 66.7
QL02p028382 Quercus lobata HOM05D003086 ORTHO05D003347 3.3e-10 68.2 54 61.1
THA.LOC109116607 Tarenaya hassleriana HOM05D003086 ORTHO05D003347 3.3e-10 68.2 54 64.8
Manes.01G053400 Manihot esculenta HOM05D003086 ORTHO05D003347 4.4e-10 67.8 89 50.6
MD06G1113400 Malus domestica HOM05D003086 ORTHO05D003347 9.7e-10 66.6 56 62.5
Psat7g022720 Pisum sativum HOM05D003086 ORTHO05D003347 9.7e-10 66.6 51 66.7
Glyma.05G219700 Glycine max HOM05D003086 ORTHO05D003347 1.3e-09 66.2 52 69.2
Glyma.08G026000 Glycine max HOM05D003086 ORTHO05D003347 1.3e-09 66.2 52 69.2
Potri.001G087200 Populus trichocarpa HOM05D003086 ORTHO05D003347 1.7e-09 65.9 90 51.1
Sabra01G0063400 Salix brachista HOM05D003086 ORTHO05D003347 1.7e-09 65.9 77 50.6
Cfa003782 Carpinus fangiana HOM05D003086 ORTHO05D003347 2.2e-09 65.5 59 54.2
RcHm_v2.0_Chr7g0186341 Rosa chinensis HOM05D003086 ORTHO05D003347 2.2e-09 65.5 50 64.0
Aa31LG2G1580 Aethionema arabicum HOM05D000001 ORTHO05D000003 2.8e-09 65.1 76 47.4
TWI60G1451 Tripterygium wilfordii HOM05D003086 ORTHO05D003347 2.8e-09 65.1 54 63.0
AT1G64584 Arabidopsis thaliana HOM05D003086 ORTHO05D003347 6.3e-09 63.9 55 60.0
Lj4g0018385 Lotus japonicus HOM05D003086 ORTHO05D003347 6.3e-09 63.9 48 66.7
CANSAT21G1677 Cannabis sativa HOM05D003086 ORTHO05D003347 1.1e-08 63.2 47 66.0
ECA233G0233 Erigeron canadensis HOM05D003086 ORTHO05D003347 1.1e-08 63.2 92 43.5
Thhalv10026968m.g Eutrema salsugineum HOM05D003086 ORTHO05D003347 2.4e-08 62.0 48 62.5
Gorai.004G151100 Gossypium raimondii HOM05D003086 ORTHO05D003347 2.4e-08 62.0 60 50.0
Psat4g162600 Pisum sativum HOM05D003086 ORTHO05D003347 2.4e-08 62.0 69 46.4
PGR042G2701 Punica granatum HOM05D003086 ORTHO05D003347 2.4e-08 62.0 39 69.2
Sc23g0002030 Simmondsia chinensis HOM05D003086 ORTHO05D003347 3.1e-08 61.6 65 46.2
Haze_15678 Corylus avellana HOM05D003086 ORTHO05D003347 4.1e-08 61.2 45 62.2
Medtr8g027380 Medicago truncatula HOM05D003086 ORTHO05D003347 4.1e-08 61.2 52 53.8
Medtr8g099965 Medicago truncatula HOM05D003086 ORTHO05D003347 5.3e-08 60.8 51 60.8
Nn3g18930 Nelumbo nucifera HOM05D003086 ORTHO05D003347 5.3e-08 60.8 54 57.4
SHI06941 Sapria himalayana HOM05D003472 ORTHO05D004200 7.0e-08 60.5 76 46.1
CiPaw.11G115700 Carya illinoinensis HOM05D003086 ORTHO05D003347 1.2e-07 59.7 52 59.6
HanXRQChr08g0225161 Helianthus annuus HOM05D003086 ORTHO05D003347 1.2e-07 59.7 88 45.5
TPR.G3409 Trifolium pratense HOM05D003086 ORTHO05D003347 1.6e-07 59.3 38 71.1
CARHR255790 Cardamine hirsuta HOM05D003086 ORTHO05D003347 2.0e-07 58.9 53 58.5
Lalb_Chr09g0332101 Lupinus albus HOM05D003086 ORTHO05D003347 2.0e-07 58.9 48 56.2
Phvul.002G328908 Phaseolus vulgaris HOM05D003086 ORTHO05D003347 2.7e-07 58.5 52 57.7
TPR.G20234 Trifolium pratense HOM05D003086 ORTHO05D003347 2.7e-07 58.5 76 39.5
AL6G44860 Arabidopsis lyrata HOM05D003086 ORTHO05D003347 3.5e-07 58.2 53 58.5
Duzib084G0307 Durio zibethinus HOM05D003086 ORTHO05D003347 3.5e-07 58.2 44 65.9
Hma1.2p1_0591F.1_g185160 Hydrangea macrophylla HOM05D003086 ORTHO05D003347 4.5e-07 57.8 86 40.7
Cfa015968 Carpinus fangiana HOM05D003086 ORTHO05D003347 5.9e-07 57.4 47 59.6
CSS0010966 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 7.7e-07 57.0 86 40.7
AT4G10810 Arabidopsis thaliana HOM05D003086 ORTHO05D003347 1.0e-06 56.6 53 56.6
QL08p045815 Quercus lobata HOM05D003086 ORTHO05D003347 1.0e-06 56.6 44 59.1
C09p35950 Brassica napus HOM05D003086 ORTHO05D003347 1.3e-06 56.2 46 58.7
BolC9t56428H Brassica oleracea HOM05D003086 ORTHO05D003347 1.3e-06 56.2 46 58.7
Potri.002G173700 Populus trichocarpa HOM05D003086 ORTHO05D003347 1.3e-06 56.2 65 47.7
Sabra02G0139700 Salix brachista HOM05D003086 ORTHO05D003347 1.3e-06 56.2 60 46.7
Carub.0006s2958 Capsella rubella HOM05D003086 ORTHO05D003347 1.7e-06 55.8 64 51.6
Gohir.A08G124800 Gossypium hirsutum HOM05D003086 ORTHO05D003347 1.7e-06 55.8 45 55.6
Lj3g0004362 Lotus japonicus HOM05D003086 ORTHO05D003347 1.7e-06 55.8 46 58.7
Manes.05G021200 Manihot esculenta HOM05D003086 ORTHO05D003347 2.2e-06 55.5 45 57.8
Thecc.01G339800 Theobroma cacao HOM05D003086 ORTHO05D003347 2.2e-06 55.5 45 53.3
HPP92_025720 Vanilla planifolia HOM05D003086 ORTHO05D003347 2.2e-06 55.5 75 44.0
Atru.chr9.1962 Acer truncatum HOM05D003086 ORTHO05D003347 2.9e-06 55.1 52 53.8
A02p26470 Brassica napus HOM05D003086 ORTHO05D003347 2.9e-06 55.1 46 56.5
BraA02t07650Z Brassica rapa HOM05D003086 ORTHO05D003347 2.9e-06 55.1 46 56.5
CSS0003230 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 2.9e-06 55.1 42 59.5
CSS0024306 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 2.9e-06 55.1 42 59.5
Atru.chr5.701 Acer truncatum HOM05D003086 ORTHO05D003347 3.8e-06 54.7 47 51.1
CARHR046350 Cardamine hirsuta HOM05D003086 ORTHO05D003347 3.8e-06 54.7 54 55.6
Ciclev10023176m.g Citrus clementina HOM05D003086 ORTHO05D003347 3.8e-06 54.7 44 61.4
COL.COLO4_06232 Corchorus olitorius HOM05D003086 ORTHO05D003347 3.8e-06 54.7 47 53.2
DCAR_008957 Daucus carota HOM05D003086 ORTHO05D003347 3.8e-06 54.7 70 47.1
Gohir.A11G098500 Gossypium hirsutum HOM05D003086 ORTHO05D003347 3.8e-06 54.7 54 50.0
Gohir.D11G103100 Gossypium hirsutum HOM05D003086 ORTHO05D003347 3.8e-06 54.7 45 53.3
Gorai.007G110300 Gossypium raimondii HOM05D003086 ORTHO05D003347 3.8e-06 54.7 54 50.0
Aa31LG9G11270 Aethionema arabicum HOM05D003086 ORTHO05D003347 5.0e-06 54.3 45 60.0
Mapoly0126s0038 Marchantia polymorpha HOM05D003673 ORTHO05D004764 5.0e-06 54.3 52 51.9
Rhsim09G0207000 Rhododendron simsii HOM05D003086 ORTHO05D003347 5.0e-06 54.3 86 37.2
BcaC05g27913 Brassica carinata HOM05D003086 ORTHO05D003347 6.5e-06 53.9 45 57.8
C05p39210 Brassica napus HOM05D003086 ORTHO05D003347 6.5e-06 53.9 45 57.8
BolC5t32654H Brassica oleracea HOM05D003086 ORTHO05D003347 6.5e-06 53.9 45 57.8
TAR375G0287 Trochodendron aralioides HOM05D003086 ORTHO05D003347 6.5e-06 53.9 54 50.0
Ciclev10022804m.g Citrus clementina HOM05D003086 ORTHO05D003347 8.5e-06 53.5 63 42.9
Ciclev10033638m.g Citrus clementina HOM05D003086 ORTHO05D003347 8.5e-06 53.5 39 66.7
Lalb_Chr04g0254361 Lupinus albus HOM05D003086 ORTHO05D003347 8.5e-06 53.5 47 48.9
Phvul.010G115200 Phaseolus vulgaris HOM05D003086 ORTHO05D003347 8.5e-06 53.5 78 41.0
QL09p037005 Quercus lobata HOM05D003086 ORTHO05D003347 8.5e-06 53.5 44 54.5
HPP92_013003 Vanilla planifolia HOM05D003086 ORTHO05D003347 8.5e-06 53.5 71 39.4


User provided reference genes

Program Settings