Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0015581 Sechium edule HOM05D005468 ORTHO05D006789 4.6e-135 484.6 244 100.0
CsaV3_3G044590 Cucumis sativus L. HOM05D005468 ORTHO05D006789 2.1e-103 379.4 234 83.3
Duzib093G1518 Durio zibethinus HOM05D005468 ORTHO05D006789 4.3e-101 371.7 233 82.8
Manes.18G025300 Manihot esculenta HOM05D005468 ORTHO05D006789 4.3e-101 371.7 233 82.4
Potri.002G130100 Populus trichocarpa HOM05D005468 ORTHO05D006789 8.1e-100 367.5 233 81.5
GSVIVG01009588001 Vitis vinifera HOM05D005468 ORTHO05D006789 1.1e-99 367.1 233 81.1
Thecc.08G017100 Theobroma cacao HOM05D005468 ORTHO05D006789 1.4e-99 366.7 233 82.0
Ciclev10002374m.g Citrus clementina HOM05D005468 ORTHO05D006789 2.4e-99 365.9 233 81.5
Eucgr.F02400 Eucalyptus grandis HOM05D005468 ORTHO05D006789 2.4e-99 365.9 233 81.1
Cfa018481 Carpinus fangiana HOM05D005468 ORTHO05D006789 4.0e-99 365.2 233 80.7
Duzib116G0868 Durio zibethinus HOM05D005468 ORTHO05D006789 4.0e-99 365.2 233 81.1
Rhsim06G0040800 Rhododendron simsii HOM05D005468 ORTHO05D006789 4.0e-99 365.2 233 81.1
TWI56G0523 Tripterygium wilfordii HOM05D005468 ORTHO05D006789 4.0e-99 365.2 233 81.1
Gohir.A05G198900 Gossypium hirsutum HOM05D005468 ORTHO05D006789 6.9e-99 364.4 230 81.7
Gohir.D05G201600 Gossypium hirsutum HOM05D005468 ORTHO05D006789 6.9e-99 364.4 230 81.7
Gorai.009G207300 Gossypium raimondii HOM05D005468 ORTHO05D006789 6.9e-99 364.4 230 81.7
Potri.014G037100 Populus trichocarpa HOM05D005468 ORTHO05D006789 6.9e-99 364.4 233 80.7
Sabra14G0026700 Salix brachista HOM05D005468 ORTHO05D006789 9.0e-99 364.0 233 80.3
PGR031G2816 Punica granatum HOM05D005468 ORTHO05D006789 1.2e-98 363.6 233 81.1
vmacro21583 Vaccinium macrocarpon HOM05D005468 ORTHO05D006789 1.2e-98 363.6 233 80.7
Gorai.010G015600 Gossypium raimondii HOM05D005468 ORTHO05D006789 1.5e-98 363.2 233 80.7
Prupe.1G387900 Prunus persica HOM05D005468 ORTHO05D006789 2.0e-98 362.8 233 80.3
arahy.Tifrunner.gnm1.ann1.P2WCGJ Arachis hypogaea HOM05D005468 ORTHO05D006789 3.4e-98 362.1 231 79.7
arahy.Tifrunner.gnm1.ann1.Y0EE8X Arachis hypogaea HOM05D005468 ORTHO05D006789 3.4e-98 362.1 231 79.7
Psat5g045200 Pisum sativum HOM05D005468 ORTHO05D006789 3.4e-98 362.1 233 79.4
RcHm_v2.0_Chr6g0300041 Rosa chinensis HOM05D005468 ORTHO05D006789 3.4e-98 362.1 233 79.4
Sc15g0006600 Simmondsia chinensis HOM05D005468 ORTHO05D006789 3.4e-98 362.1 231 79.2
QL02p006494 Quercus lobata HOM05D005468 ORTHO05D006789 4.5e-98 361.7 232 80.6
COL.COLO4_26415 Corchorus olitorius HOM05D005468 ORTHO05D006789 5.8e-98 361.3 233 79.0
Lalb_Chr23g0266811 Lupinus albus HOM05D005468 ORTHO05D006789 5.8e-98 361.3 233 79.0
CiPaw.15G066600 Carya illinoinensis HOM05D005468 ORTHO05D006789 9.9e-98 360.5 233 79.8
FvH4_2g40630 Fragaria vesca HOM05D005468 ORTHO05D006789 9.9e-98 360.5 233 79.0
Manes.05G168700 Manihot esculenta HOM05D005468 ORTHO05D006789 9.9e-98 360.5 233 80.3
Phvul.009G061800 Phaseolus vulgaris HOM05D005468 ORTHO05D006789 1.3e-97 360.1 233 79.0
Cpa.g.sc64.18 Carica papaya HOM05D005468 ORTHO05D006789 2.2e-97 359.4 233 78.5
Ca_15981_v3 Cicer arietinum L. HOM05D005468 ORTHO05D006789 2.2e-97 359.4 231 79.2
FAN20G0953 Fragaria x ananassa HOM05D005468 ORTHO05D006789 2.2e-97 359.4 233 78.5
Hund26608 Selenicereus undatus HOM05D005468 ORTHO05D006789 2.2e-97 359.4 231 79.2
Gohir.A06G015000 Gossypium hirsutum HOM05D005468 ORTHO05D006789 2.9e-97 359.0 231 80.5
Nn5g29408 Nelumbo nucifera HOM05D005468 ORTHO05D006789 3.8e-97 358.6 233 78.5
Cc10_g03660 Coffea canephora HOM05D005468 ORTHO05D006789 4.9e-97 358.2 233 79.4
FAN15G3574 Fragaria x ananassa HOM05D005468 ORTHO05D006789 4.9e-97 358.2 233 78.1
FAN27G0003 Fragaria x ananassa HOM05D005468 ORTHO05D006789 6.4e-97 357.8 233 78.1
Glyma.04G035800 Glycine max HOM05D005468 ORTHO05D006789 6.4e-97 357.8 233 79.0
Medtr3g100940 Medicago truncatula HOM05D005468 ORTHO05D006789 6.4e-97 357.8 233 78.5
VMungo1309G2021 Vigna mungo HOM05D005468 ORTHO05D006789 6.4e-97 357.8 233 79.0
CiPaw.16G051900 Carya illinoinensis HOM05D005468 ORTHO05D006789 8.4e-97 357.5 233 79.4
Glyma.06G035800 Glycine max HOM05D005468 ORTHO05D006789 8.4e-97 357.5 233 79.0
Actinidia38034 Actinidia chinensis HOM05D005468 ORTHO05D006789 1.4e-96 356.7 233 78.5
Hma1.2p1_0260F.1_g104510 Hydrangea macrophylla HOM05D005468 ORTHO05D006789 1.4e-96 356.7 233 79.8
TPR.G26072 Trifolium pratense HOM05D005468 ORTHO05D006789 1.4e-96 356.7 233 79.0
SalBow8G4730 Salvia bowleyana HOM05D005468 ORTHO05D006789 1.9e-96 356.3 231 79.2
Lalb_Chr08g0245731 Lupinus albus HOM05D005468 ORTHO05D006789 2.4e-96 355.9 233 78.1
SGA_v2.0_scaffold28G11772 Striga asiatica HOM05D005468 ORTHO05D006789 2.4e-96 355.9 231 78.4
Lj1g0015279 Lotus japonicus HOM05D005468 ORTHO05D006789 3.2e-96 355.5 233 77.7
Sabra02G0102000 Salix brachista HOM05D005468 ORTHO05D006789 3.2e-96 355.5 233 79.8
MBI16_g31482_MAGBIO Magnolia biondii HOM05D005468 ORTHO05D006789 5.5e-96 354.8 230 78.3
Actinidia29851 Actinidia chinensis HOM05D005468 ORTHO05D006789 4.6e-95 351.7 233 77.7
THA.LOC104803401 Tarenaya hassleriana HOM05D005468 ORTHO05D006789 2.3e-94 349.4 233 76.4
TAR625G1030 Trochodendron aralioides HOM05D005468 ORTHO05D006789 3.0e-94 349.0 233 78.1
Migut.N02685 Erythranthe guttata HOM05D005468 ORTHO05D006789 8.7e-94 347.4 231 78.4
EL10Ac1g01754 Beta vulgaris HOM05D005468 ORTHO05D006789 2.5e-93 345.9 231 75.8
THA.LOC104813200 Tarenaya hassleriana HOM05D005468 ORTHO05D006789 2.5e-93 345.9 233 77.3
TAR381G1584 Trochodendron aralioides HOM05D005468 ORTHO05D006789 2.5e-93 345.9 233 76.4
MSTRG.22278 Avicennia marina HOM05D005468 ORTHO05D006789 4.3e-93 345.1 231 77.1
Gohir.D06G013000 Gossypium hirsutum HOM05D005468 ORTHO05D006789 5.6e-93 344.7 233 77.3
CAN.G1002.2 Capsicum annuum HOM05D005468 ORTHO05D006789 7.4e-93 344.4 231 76.2
MD15G1034100 Malus domestica HOM05D005468 ORTHO05D006789 1.6e-92 343.2 232 75.9
Aa31sc119G90 Aethionema arabicum HOM05D005468 ORTHO05D006789 2.8e-92 342.4 231 74.9
HanXRQChr02g0046441 Helianthus annuus HOM05D005468 ORTHO05D006789 2.8e-92 342.4 233 76.4
CANSAT56G1446 Cannabis sativa HOM05D005468 ORTHO05D006789 6.2e-92 341.3 231 76.2
Migut.C00650 Erythranthe guttata HOM05D005468 ORTHO05D006789 8.2e-92 340.9 231 74.9
Lsat_1_v5_gn_1_19180 Lactuca sativa HOM05D005468 ORTHO05D006789 8.2e-92 340.9 232 75.9
MD08G1039400 Malus domestica HOM05D005468 ORTHO05D006789 1.1e-91 340.5 233 76.0
BcaB07g33823 Brassica carinata HOM05D005468 ORTHO05D006789 2.4e-91 339.3 231 75.8
BcaC08g42963 Brassica carinata HOM05D005468 ORTHO05D006789 2.4e-91 339.3 231 75.8
C06p02040 Brassica napus HOM05D005468 ORTHO05D006789 2.4e-91 339.3 231 75.8
BraA10t42894Z Brassica rapa HOM05D005468 ORTHO05D006789 2.4e-91 339.3 231 75.8
Sp1g34660 Schrenkiella parvula HOM05D005468 ORTHO05D006789 2.4e-91 339.3 231 75.8
Thhalv10011754m.g Eutrema salsugineum HOM05D005468 ORTHO05D006789 5.3e-91 338.2 231 75.3
PGSC0003DMG400015450 Solanum tuberosum HOM05D005468 ORTHO05D006789 1.2e-90 337.0 233 75.1
Zm00001eb058600 Zea mays HOM05D005468 ORTHO05D006789 1.5e-90 336.7 230 73.0
Sopen12g030860 Solanum pennellii HOM05D005468 ORTHO05D006789 2.6e-90 335.9 233 74.7
Os03g0766000 Oryza sativa ssp. japonica HOM05D005468 ORTHO05D006789 3.4e-90 335.5 230 73.0
MSTRG.24315 Avicennia marina HOM05D005468 ORTHO05D006789 4.5e-90 335.1 231 74.5
AL1G54040 Arabidopsis lyrata HOM05D005468 ORTHO05D006789 5.8e-90 334.7 231 74.0
PSO210G2601 Papaver somniferum HOM05D005468 ORTHO05D006789 5.8e-90 334.7 233 72.1
CDE04G3466 Ceratophyllum demersum HOM05D005468 ORTHO05D006789 1.3e-89 333.6 231 73.2
PSO170G5983 Papaver somniferum HOM05D005468 ORTHO05D006789 1.7e-89 333.2 233 71.7
BcaC07g37205 Brassica carinata HOM05D005468 ORTHO05D006789 2.2e-89 332.8 231 73.6
A08p05550 Brassica napus HOM05D005468 ORTHO05D006789 2.9e-89 332.4 231 73.6
Carub.0001s3642 Capsella rubella HOM05D005468 ORTHO05D006789 2.9e-89 332.4 231 73.6
Dinv36016 Davidia involucrata HOM05D005468 ORTHO05D006789 2.9e-89 332.4 233 76.0
BolC8t47397H Brassica oleracea HOM05D005468 ORTHO05D006789 3.8e-89 332.0 231 73.6
AT1G47640 Arabidopsis thaliana HOM05D005468 ORTHO05D006789 4.9e-89 331.6 231 73.6
BolC6t35332H Brassica oleracea HOM05D005468 ORTHO05D006789 4.9e-89 331.6 240 72.9
BraA08t32559Z Brassica rapa HOM05D005468 ORTHO05D006789 1.1e-88 330.5 231 73.2
C08p06100 Brassica napus HOM05D005468 ORTHO05D006789 4.2e-88 328.6 231 73.2
A10p06260 Brassica napus HOM05D005468 ORTHO05D006789 6.0e-87 324.7 258 67.8
Zm00001eb214040 Zea mays HOM05D005468 ORTHO05D006789 1.0e-86 323.9 231 70.6
Aqoxy6G00937 Aquilegia oxysepala HOM05D005468 ORTHO05D006789 2.2e-84 316.2 232 70.3
Mapoly0136s0007 Marchantia polymorpha HOM05D005468 ORTHO05D006789 8.2e-84 314.3 231 67.1
Ah.03g134890 Amaranthus hybridus HOM05D005468 ORTHO05D006789 1.4e-83 313.5 218 74.3
Nn6g32145 Nelumbo nucifera HOM05D005468 ORTHO05D006789 5.3e-83 311.6 233 70.4
HPP92_019640 Vanilla planifolia HOM05D005468 ORTHO05D006789 3.4e-82 308.9 233 66.1
Atru.chr13.591 Acer truncatum HOM05D005468 ORTHO05D006789 1.4e-80 303.5 162 91.4
SMO119G0125 Selaginella moellendorffii HOM05D005468 ORTHO05D006789 4.2e-80 302.0 233 64.8
SMO163G0011 Selaginella moellendorffii HOM05D005468 ORTHO05D006789 4.2e-80 302.0 233 64.8
Pp3c3_13070 Physcomitrium patens HOM05D005468 ORTHO05D006789 2.1e-79 299.7 231 63.6
ECA247G3714 Erigeron canadensis HOM05D005468 ORTHO05D006789 8.8e-78 294.3 205 75.6
SEGI_18559 Sequoiadendron giganteum HOM05D005468 ORTHO05D006789 4.3e-77 292.0 214 69.2
CSS0002701 Camellia sinensis var. sinensis HOM05D005468 ORTHO05D006789 2.2e-76 289.7 194 79.9
Haze_17591 Corylus avellana HOM05D005468 ORTHO05D006789 2.8e-76 289.3 195 79.0
Dinv39358 Davidia involucrata HOM05D005468 ORTHO05D006789 1.4e-75 287.0 194 77.8
Lj1C905G11 Lonicera japonica HOM05D001696 ORTHO05D001746 3.1e-75 285.8 193 77.7
ATR0733G175 Amborella trichopoda HOM05D005468 ORTHO05D006789 4.1e-75 285.4 201 75.1
unitig_26.g10028 Utricularia gibba HOM05D005468 ORTHO05D006789 4.1e-75 285.4 202 74.3
CARHR037270 Cardamine hirsuta HOM05D005468 ORTHO05D006789 6.9e-75 284.6 161 85.1
Nitab4.5_0000790g0020 Nicotiana tabacum HOM05D005468 ORTHO05D006789 6.9e-75 284.6 256 62.9
BcaB04g17508 Brassica carinata HOM05D005468 ORTHO05D006789 3.8e-73 278.9 230 63.9
AUR62033873 Chenopodium quinoa HOM05D005468 ORTHO05D006789 3.8e-73 278.9 388 45.1
Nitab4.5_0000453g0110 Nicotiana tabacum HOM05D005468 ORTHO05D006789 3.8e-73 278.9 195 75.4
Atru.BG.240.p Acer truncatum HOM05D005468 ORTHO05D006789 5.0e-73 278.5 187 79.1
Oeu028451.1 Olea europaea HOM05D005468 ORTHO05D006789 5.0e-73 278.5 231 65.8
Peaxi162Scf00064g00217 Petunia axillaris HOM05D005468 ORTHO05D006789 4.2e-72 275.4 191 77.0
CBR_g99 Chara braunii HOM05D005468 ORTHO05D006789 5.5e-72 275.0 230 60.0
Sed0011570 Sechium edule HOM05D005468 ORTHO05D006789 3.6e-71 272.3 230 64.3
CARHR054190 Cardamine hirsuta HOM05D005468 ORTHO05D006789 1.4e-67 260.4 160 75.6
Migut.O00871 Erythranthe guttata HOM05D005468 ORTHO05D006789 3.8e-57 225.7 120 90.8
CARHR034590 Cardamine hirsuta HOM05D005468 ORTHO05D006789 6.5e-57 224.9 131 80.2
AagrBONN_evm.TU.Sc2ySwM_362.508 Anthoceros agrestis HOM05D005468 ORTHO05D006789 5.7e-37 158.7 194 46.9
CARHR259240 Cardamine hirsuta HOM05D005468 ORTHO05D006789 3.1e-35 152.9 140 57.9
arahy.Tifrunner.gnm1.ann1.N94XAP Arachis hypogaea HOM05D005468 ORTHO05D006789 3.1e-22 109.8 62 77.4
CAN.G371.92 Capsicum annuum HOM05D005468 ORTHO05D006789 1.2e-18 97.8 152 41.4
AUR62040094 Chenopodium quinoa HOM05D000023 ORTHO05D000014 2.1e-15 87.0 45 86.7
Actinidia01618 Actinidia chinensis HOM05D000509 ORTHO05D000466 6.2e-15 85.5 157 40.8
arahy.Tifrunner.gnm1.ann1.APL3GL Arachis hypogaea HOM05D005468 ORTHO05D006789 1.8e-14 84.0 80 56.2
Rhsim05G0183600 Rhododendron simsii HOM05D000190 ORTHO05D000113 2.6e-13 80.1 52 69.2
arahy.Tifrunner.gnm1.ann1.R2S7J0 Arachis hypogaea HOM05D005468 ORTHO05D004485 2.4e-11 73.6 79 48.1
CARHR037280 Cardamine hirsuta HOM05D005468 ORTHO05D006789 5.2e-06 55.8 73 49.3


User provided reference genes

Program Settings