Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0015580 Sechium edule HOM05D004800 ORTHO05D005842 1.2e-30 136.0 74 100.0
Sed0002840 Sechium edule HOM05D004800 ORTHO05D005842 2.4e-23 111.7 72 81.9
CsaV3_4G036490 Cucumis sativus L. HOM05D004800 ORTHO05D005842 3.9e-21 104.4 72 79.2
MELO3C016954.2 Cucumis melo HOM05D004800 ORTHO05D005842 4.3e-20 100.9 72 76.4
ClCG05G016220 Citrullus lanatus HOM05D004800 ORTHO05D005842 5.6e-20 100.5 72 76.4
QL02p018802 Quercus lobata HOM05D004800 ORTHO05D005842 9.3e-15 83.2 72 59.7
Cfa013047 Carpinus fangiana HOM05D004800 ORTHO05D005842 2.7e-14 81.6 72 56.9
CiPaw.08G005800 Carya illinoinensis HOM05D004800 ORTHO05D005842 1.3e-13 79.3 72 56.9
Gohir.A05G060000 Gossypium hirsutum HOM05D004800 ORTHO05D005842 2.3e-13 78.6 72 58.3
Gohir.D05G062200 Gossypium hirsutum HOM05D004800 ORTHO05D005842 2.3e-13 78.6 72 58.3
Gorai.009G063300 Gossypium raimondii HOM05D004800 ORTHO05D005842 2.3e-13 78.6 72 58.3
Potri.006G264700 Populus trichocarpa HOM05D004800 ORTHO05D005842 3.0e-13 78.2 72 56.9
Haze_21408 Corylus avellana HOM05D004800 ORTHO05D005842 5.1e-13 77.4 72 54.2
Duzib168G1619 Durio zibethinus HOM05D004800 ORTHO05D005842 8.7e-13 76.6 72 58.3
COL.COLO4_18955 Corchorus olitorius HOM05D004800 ORTHO05D005842 1.5e-12 75.9 65 60.0
Ciclev10009140m.g Citrus clementina HOM05D004800 ORTHO05D005842 2.5e-12 75.1 72 52.8
CSS0020729 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 4.3e-12 74.3 72 51.4
CSS0041988 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 4.3e-12 74.3 72 51.4
Manes.03G008100 Manihot esculenta HOM05D004800 ORTHO05D005842 9.6e-12 73.2 70 54.3
Thecc.09G015200 Theobroma cacao HOM05D004800 ORTHO05D005842 2.1e-11 72.0 72 55.6
TWI34G0615 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 2.1e-11 72.0 66 56.1
CANSAT25G3039 Cannabis sativa HOM05D004800 ORTHO05D005842 3.7e-11 71.2 72 55.6
TWI32G1317 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 3.7e-11 71.2 66 54.5
Sabra06G0206800 Salix brachista HOM05D004800 ORTHO05D005842 4.8e-11 70.9 72 52.8
Nn2g12411 Nelumbo nucifera HOM05D004800 ORTHO05D005842 8.1e-11 70.1 71 50.7
TAR625G0162 Trochodendron aralioides HOM05D004800 ORTHO05D005842 8.1e-11 70.1 70 51.4
Cpa.g.sc148.17 Carica papaya HOM05D004800 ORTHO05D005842 1.4e-10 69.3 67 53.7
TAR625G0311 Trochodendron aralioides HOM05D004800 ORTHO05D005842 1.4e-10 69.3 70 51.4
Atru.chr7.2559 Acer truncatum HOM05D004800 ORTHO05D005842 1.8e-10 68.9 72 55.6
Dinv13413 Davidia involucrata HOM05D004800 ORTHO05D005842 2.4e-10 68.6 72 50.0
Eucgr.L02918 Eucalyptus grandis HOM05D004800 ORTHO05D005842 3.1e-10 68.2 72 51.4
DCAR_022862 Daucus carota HOM05D004800 ORTHO05D005842 4.0e-10 67.8 63 55.6
Actinidia23108 Actinidia chinensis HOM05D004800 ORTHO05D005842 6.9e-10 67.0 72 51.4
Aa31LG11G4300 Aethionema arabicum HOM05D004800 ORTHO05D005842 6.9e-10 67.0 63 52.4
Dinv08182 Davidia involucrata HOM05D004800 ORTHO05D005842 6.9e-10 67.0 72 48.6
MD08G1055900 Malus domestica HOM05D004800 ORTHO05D005842 9.0e-10 66.6 72 50.0
Sabra18G0021000 Salix brachista HOM05D004800 ORTHO05D005842 9.0e-10 66.6 62 51.6
Migut.A00358 Erythranthe guttata HOM05D004800 ORTHO05D005842 1.2e-09 66.2 70 44.3
Hma1.2p1_0389F.1_g142470 Hydrangea macrophylla HOM05D004800 ORTHO05D005842 1.2e-09 66.2 74 51.4
Prupe.1G394400 Prunus persica HOM05D004800 ORTHO05D005842 1.2e-09 66.2 72 51.4
ECA240G1139 Erigeron canadensis HOM05D004800 ORTHO05D005842 1.5e-09 65.9 63 49.2
Rhsim07G0165700 Rhododendron simsii HOM05D004800 ORTHO05D005842 2.0e-09 65.5 65 52.3
Glyma.06G061100 Glycine max HOM05D004800 ORTHO05D005842 3.4e-09 64.7 66 48.5
Eucgr.C02606 Eucalyptus grandis HOM05D004800 ORTHO05D005842 7.6e-09 63.5 72 48.6
Psat5g033480 Pisum sativum HOM05D004800 ORTHO05D005842 2.2e-08 62.0 66 43.9
Sp2g22450 Schrenkiella parvula HOM05D004800 ORTHO05D005842 2.2e-08 62.0 65 50.8
HanXRQChr13g0411011 Helianthus annuus HOM05D004800 ORTHO05D005842 2.9e-08 61.6 63 47.6
Phvul.009G086600 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 2.9e-08 61.6 68 44.1
Sc09g0010680 Simmondsia chinensis HOM05D004800 ORTHO05D005842 2.9e-08 61.6 65 47.7
Manes.16G130200 Manihot esculenta HOM05D004800 ORTHO05D005842 3.8e-08 61.2 65 52.3
MSTRG.25830 Avicennia marina HOM05D004800 ORTHO05D005842 4.9e-08 60.8 70 41.4
PGR044G1902 Punica granatum HOM05D004800 ORTHO05D005842 6.5e-08 60.5 63 46.0
Aqoxy7G03382 Aquilegia oxysepala HOM05D004800 ORTHO05D005842 8.4e-08 60.1 70 47.1
SGA_v2.0_scaffold147G36341 Striga asiatica HOM05D004800 ORTHO05D005842 8.4e-08 60.1 65 46.2
Peaxi162Scf00006g00249 Petunia axillaris HOM05D004800 ORTHO05D005842 1.1e-07 59.7 65 46.2
FAN20G2958 Fragaria x ananassa HOM05D004800 ORTHO05D005842 1.4e-07 59.3 73 47.9
FAN27G0477 Fragaria x ananassa HOM05D004800 ORTHO05D005842 1.4e-07 59.3 73 47.9
Lj7A735T34 Lonicera japonica HOM05D004800 ORTHO05D005842 1.4e-07 59.3 62 48.4
Lj1g0022737 Lotus japonicus HOM05D004800 ORTHO05D005842 1.4e-07 59.3 62 45.2
AUR62032420 Chenopodium quinoa HOM05D004800 ORTHO05D005842 1.9e-07 58.9 70 42.9
Thhalv10004902m.g Eutrema salsugineum HOM05D004800 ORTHO05D005842 1.9e-07 58.9 66 45.5
Oeu001621.3 Olea europaea HOM05D004800 ORTHO05D005842 1.9e-07 58.9 70 38.6
vmacro05151 Vaccinium macrocarpon HOM05D004800 ORTHO05D005842 1.9e-07 58.9 57 50.9
EL10Ac2g02494 Beta vulgaris HOM05D004800 ORTHO05D005842 2.5e-07 58.5 66 45.5
A06p35840 Brassica napus HOM05D004800 ORTHO05D005842 2.5e-07 58.5 58 50.0
BraA06t26509Z Brassica rapa HOM05D004800 ORTHO05D005842 2.5e-07 58.5 58 50.0
Cc08_g07200 Coffea canephora HOM05D004800 ORTHO05D005842 2.5e-07 58.5 63 49.2
Nitab4.5_0010613g0010 Nicotiana tabacum HOM05D004800 ORTHO05D005842 2.5e-07 58.5 60 50.0
Hund02986 Selenicereus undatus HOM05D004800 ORTHO05D005842 2.5e-07 58.5 73 41.1
AUR62024801 Chenopodium quinoa HOM05D004800 ORTHO05D005842 4.2e-07 57.8 70 41.4
RcHm_v2.0_Chr6g0299361 Rosa chinensis HOM05D004800 ORTHO05D005842 4.2e-07 57.8 75 46.7
BcaNung03198 Brassica carinata HOM05D004800 ORTHO05D005842 7.1e-07 57.0 58 48.3
C07p42740 Brassica napus HOM05D004800 ORTHO05D005842 7.1e-07 57.0 58 48.3
CAN.G333.3 Capsicum annuum HOM05D004800 ORTHO05D005842 7.1e-07 57.0 69 42.0
VMungo1309G1055 Vigna mungo HOM05D004800 ORTHO05D005842 7.1e-07 57.0 62 45.2
Lsat_1_v5_gn_5_49760 Lactuca sativa HOM05D004800 ORTHO05D005842 9.3e-07 56.6 63 46.0
VMungo0647G1387 Vigna mungo HOM05D004800 ORTHO05D005842 9.3e-07 56.6 72 38.9
AL6G36710 Arabidopsis lyrata HOM05D004800 ORTHO05D005842 1.6e-06 55.8 63 46.0
AT5G25080 Arabidopsis thaliana HOM05D004800 ORTHO05D005842 1.6e-06 55.8 63 46.0
BraA09t36276Z Brassica rapa HOM05D004800 ORTHO05D005842 1.6e-06 55.8 64 45.3
FvH4_2g41170 Fragaria vesca HOM05D004800 ORTHO05D005842 1.6e-06 55.8 73 45.2
BcaC04g23570 Brassica carinata HOM05D004800 ORTHO05D005842 2.1e-06 55.5 64 43.8
C09p07000 Brassica napus HOM05D004800 ORTHO05D005842 2.1e-06 55.5 64 43.8
BolC9t53616H Brassica oleracea HOM05D004800 ORTHO05D005842 2.1e-06 55.5 64 43.8
CARHR188420 Cardamine hirsuta HOM05D004800 ORTHO05D005842 2.1e-06 55.5 58 46.6
TPR.G1887 Trifolium pratense HOM05D004800 ORTHO05D005842 2.1e-06 55.5 62 41.9
Oeu009650.1 Olea europaea HOM05D004800 ORTHO05D005842 2.7e-06 55.1 70 35.7
BcaNung02298 Brassica carinata HOM05D004800 ORTHO05D005842 3.5e-06 54.7 58 46.6
BolC7t44804H Brassica oleracea HOM05D004800 ORTHO05D005842 3.5e-06 54.7 58 46.6
CSS0021373 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 3.5e-06 54.7 47 57.4
Medtr3g105925 Medicago truncatula HOM05D004800 ORTHO05D005842 3.5e-06 54.7 73 39.7
SalBow4G3208 Salvia bowleyana HOM05D004800 ORTHO05D005842 4.6e-06 54.3 65 41.5
unitig_749.g13819 Utricularia gibba HOM05D004800 ORTHO05D005842 4.6e-06 54.3 63 39.7
BcaB04g19808 Brassica carinata HOM05D004800 ORTHO05D005842 7.9e-06 53.5 70 42.9
A09p06310 Brassica napus HOM05D004800 ORTHO05D005842 7.9e-06 53.5 64 43.8
Psat6g026000 Pisum sativum HOM05D004800 ORTHO05D005842 7.9e-06 53.5 66 39.4
SHI21074 Sapria himalayana HOM05D004800 ORTHO05D005842 7.9e-06 53.5 59 45.8
PGSC0003DMG401028727 Solanum tuberosum HOM05D004800 ORTHO05D005842 7.9e-06 53.5 62 41.9


User provided reference genes

Program Settings