Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0015563 Sechium edule HOM05D005868 ORTHO05D006964 4.0e-143 511.5 277 100.0
MELO3C004517.2 Cucumis melo HOM05D005868 ORTHO05D006964 1.0e-127 460.3 275 84.0
CsaV3_2G002760 Cucumis sativus L. HOM05D005868 ORTHO05D006964 5.7e-126 454.5 275 82.9
ClCG11G002940 Citrullus lanatus HOM05D005868 ORTHO05D006964 1.5e-118 429.9 321 70.7
QL02p087973 Quercus lobata HOM05D005868 ORTHO05D006964 3.9e-106 388.7 274 71.9
Manes.07G113800 Manihot esculenta HOM05D005868 ORTHO05D006964 1.5e-105 386.7 266 77.8
Duzib150G0047 Durio zibethinus HOM05D005868 ORTHO05D006964 9.5e-105 384.0 275 69.8
Cpa.g.sc165.3 Carica papaya HOM05D005868 ORTHO05D006964 1.6e-104 383.3 268 71.3
Thecc.09G124300 Theobroma cacao HOM05D005868 ORTHO05D006964 2.8e-104 382.5 275 69.5
Dinv41522 Davidia involucrata HOM05D005868 ORTHO05D006964 4.7e-104 381.7 242 81.4
COL.COLO4_11936 Corchorus olitorius HOM05D005868 ORTHO05D006964 8.1e-104 380.9 262 79.0
Gorai.009G018600 Gossypium raimondii HOM05D005868 ORTHO05D006964 1.8e-103 379.8 275 69.1
CSS0026098 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 4.0e-103 378.6 271 75.3
CiPaw.06G052800 Carya illinoinensis HOM05D005868 ORTHO05D006964 1.2e-102 377.1 271 72.0
Prupe.7G240900 Prunus persica HOM05D005868 ORTHO05D006964 1.5e-102 376.7 257 73.5
Gohir.A05G017300 Gossypium hirsutum HOM05D005868 ORTHO05D006964 2.6e-102 375.9 251 72.5
THA.LOC104808997 Tarenaya hassleriana HOM05D005868 ORTHO05D006964 3.4e-102 375.6 262 70.6
Atru.chr7.1216 Acer truncatum HOM05D005868 ORTHO05D006964 1.7e-101 373.2 258 72.1
RcHm_v2.0_Chr2g0088741 Rosa chinensis HOM05D005868 ORTHO05D006964 6.4e-101 371.3 262 71.0
RcHm_v2.0_Chr2g0088971 Rosa chinensis HOM05D005868 ORTHO05D006964 8.4e-101 370.9 262 71.0
MD15G1175100 Malus domestica HOM05D005868 ORTHO05D006964 2.4e-100 369.4 262 71.4
Ciclev10009129m.g Citrus clementina HOM05D005868 ORTHO05D006964 5.4e-100 368.2 252 71.4
FAN13G1606 Fragaria x ananassa HOM05D001017 ORTHO05D006964 1.2e-99 367.1 260 71.2
FvH4_5g12980 Fragaria vesca HOM05D005868 ORTHO05D006964 1.6e-99 366.7 267 70.4
Gohir.D05G018200 Gossypium hirsutum HOM05D005868 ORTHO05D006964 1.6e-99 366.7 250 72.0
QL93p0150_0012 Quercus lobata HOM05D005868 ORTHO05D006964 2.1e-99 366.3 239 75.7
Lj3g0005718 Lotus japonicus HOM05D005868 ORTHO05D006964 2.7e-99 365.9 265 68.7
MD02G1034400 Malus domestica HOM05D005868 ORTHO05D006964 4.6e-99 365.2 274 73.7
Eucgr.C04189 Eucalyptus grandis HOM05D005868 ORTHO05D006964 7.8e-99 364.4 259 70.7
Solyc12g006670.3 Solanum lycopersicum HOM05D005868 ORTHO05D006964 7.8e-99 364.4 256 69.9
Sopen12g002620 Solanum pennellii HOM05D005868 ORTHO05D006964 1.0e-98 364.0 256 69.9
Actinidia40461 Actinidia chinensis HOM05D005868 ORTHO05D006964 1.3e-98 363.6 255 71.8
FAN08G1464 Fragaria x ananassa HOM05D005868 ORTHO05D006964 1.3e-98 363.6 262 70.2
PGSC0003DMG402020668 Solanum tuberosum HOM05D005868 ORTHO05D006964 1.7e-98 363.2 256 69.5
vmacro16514 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 3.0e-98 362.5 250 71.6
Carub.0004s0528 Capsella rubella HOM05D005868 ORTHO05D006964 3.9e-98 362.1 258 68.6
Lj2A993T36 Lonicera japonica HOM05D005868 ORTHO05D006964 3.9e-98 362.1 244 73.4
CAN.G377.18 Capsicum annuum HOM05D005868 ORTHO05D006964 5.1e-98 361.7 257 68.9
FAN18G3119 Fragaria x ananassa HOM05D005868 ORTHO05D006964 6.6e-98 361.3 262 69.8
Rhsim01G0074500 Rhododendron simsii HOM05D005868 ORTHO05D006964 6.6e-98 361.3 246 73.6
Nn2g12624 Nelumbo nucifera HOM05D005868 ORTHO05D006964 1.5e-97 360.1 256 68.8
arahy.Tifrunner.gnm1.ann1.1Z3A91 Arachis hypogaea HOM05D005868 ORTHO05D006964 1.2e-96 357.1 251 69.7
Peaxi162Scf00984g00020 Petunia axillaris HOM05D005868 ORTHO05D006964 1.2e-96 357.1 260 71.9
VMungo0251G3516 Vigna mungo HOM05D005868 ORTHO05D006964 1.6e-96 356.7 255 69.4
AL4G17010 Arabidopsis lyrata HOM05D005868 ORTHO05D006964 6.2e-96 354.8 253 68.4
AT2G25570 Arabidopsis thaliana HOM05D005868 ORTHO05D006964 6.2e-96 354.8 253 69.2
DCAR_009552 Daucus carota HOM05D005868 ORTHO05D006964 2.4e-95 352.8 255 67.8
Medtr8g073315 Medicago truncatula HOM05D005868 ORTHO05D006964 6.8e-95 351.3 249 69.9
Lalb_Chr12g0197851 Lupinus albus HOM05D005868 ORTHO05D006964 1.2e-94 350.5 256 67.6
Migut.N02220 Erythranthe guttata HOM05D005868 ORTHO05D006964 2.0e-94 349.7 253 69.2
Sp4g04970 Schrenkiella parvula HOM05D005868 ORTHO05D006964 2.0e-94 349.7 257 67.3
Phvul.003G286500 Phaseolus vulgaris HOM05D005868 ORTHO05D006964 3.4e-94 349.0 274 64.6
Nitab4.5_0005139g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 5.8e-94 348.2 254 68.5
RcHm_v2.0_Chr2g0089021 Rosa chinensis HOM05D005868 ORTHO05D006964 2.9e-93 345.9 248 71.8
Aa31LG6G5930 Aethionema arabicum HOM05D005868 ORTHO05D006964 4.9e-93 345.1 284 62.3
MSTRG.20108 Avicennia marina HOM05D005868 ORTHO05D006964 1.1e-92 344.0 246 69.9
BcaC07g40857 Brassica carinata HOM05D005868 ORTHO05D006964 2.4e-92 342.8 250 67.6
C08p38550 Brassica napus HOM05D005868 ORTHO05D006964 3.2e-92 342.4 250 67.6
BolC8t51427H Brassica oleracea HOM05D005868 ORTHO05D006964 3.2e-92 342.4 250 67.6
BcaB08g35195 Brassica carinata HOM05D005868 ORTHO05D006964 5.4e-92 341.7 253 66.0
Potri.001G219400 Populus trichocarpa HOM05D005868 ORTHO05D006964 5.4e-92 341.7 257 72.4
A09p55560 Brassica napus HOM05D005868 ORTHO05D006964 7.1e-92 341.3 248 67.7
BraA09t40958Z Brassica rapa HOM05D005868 ORTHO05D006964 7.1e-92 341.3 248 67.7
DCAR_023114 Daucus carota HOM05D005868 ORTHO05D006964 3.5e-91 339.0 272 62.9
ATR0322G055 Amborella trichopoda HOM05D005868 ORTHO05D006964 3.9e-90 335.5 249 66.3
Sabra16G0124800 Salix brachista HOM05D005868 ORTHO05D006964 5.1e-90 335.1 266 66.2
Aqoxy6G01600 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 1.9e-89 333.2 259 66.8
Aqoxy7G02135 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 1.9e-89 333.2 259 66.8
ECA238G3092 Erigeron canadensis HOM05D005868 ORTHO05D006964 1.9e-89 333.2 269 63.9
SHI18654 Sapria himalayana HOM05D005868 ORTHO05D006964 1.9e-89 333.2 261 64.4
Zm00001eb205580 Zea mays HOM05D005868 ORTHO05D006964 2.5e-89 332.8 245 65.7
Glyma.18G237200 Glycine max HOM05D005868 ORTHO05D006964 9.6e-89 330.9 262 63.4
Glyma.08G274300 Glycine max HOM05D005868 ORTHO05D006964 1.6e-88 330.1 253 65.2
Os02g0202600 Oryza sativa ssp. japonica HOM05D005868 ORTHO05D006964 6.2e-88 328.2 262 63.4
Lsat_1_v5_gn_2_95580 Lactuca sativa HOM05D005868 ORTHO05D006964 8.1e-88 327.8 274 64.2
Haze_25605 Corylus avellana HOM05D005868 ORTHO05D006964 1.4e-87 327.0 293 60.8
unitig_37.g12428 Utricularia gibba HOM05D005868 ORTHO05D006964 2.0e-86 323.2 250 64.0
TAR383G0149 Trochodendron aralioides HOM05D005868 ORTHO05D006964 4.4e-86 322.0 249 71.1
PSO170G5445 Papaver somniferum HOM05D005868 ORTHO05D006964 5.8e-86 321.6 261 62.8
PSO455G0232 Papaver somniferum HOM05D005868 ORTHO05D006964 3.8e-85 318.9 246 65.0
Medtr0040s0110 Medicago truncatula HOM05D005868 ORTHO05D006964 1.4e-84 317.0 249 64.7
TPR.G21777 Trifolium pratense HOM05D005868 ORTHO05D006964 3.2e-84 315.8 265 61.1
CANSAT35G1449 Cannabis sativa HOM05D005868 ORTHO05D006964 4.2e-84 315.5 253 70.8
HanXRQChr07g0197781 Helianthus annuus HOM05D005868 ORTHO05D006964 4.2e-84 315.5 235 66.4
HPP92_000663 Vanilla planifolia HOM05D005868 ORTHO05D006964 7.1e-84 314.7 250 64.4
PGR102G1613 Punica granatum HOM05D005868 ORTHO05D006964 1.7e-82 310.1 277 65.7
HPP92_000683 Vanilla planifolia HOM05D005868 ORTHO05D006964 2.3e-82 309.7 250 63.6
GSVIVG01015515001 Vitis vinifera HOM05D000032 ORTHO05D001620 3.9e-82 308.9 272 60.3
CSS0035520 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 5.6e-81 305.1 287 58.9
TWI32G0760 Tripterygium wilfordii HOM05D005868 ORTHO05D006964 9.6e-81 304.3 276 65.9
CSS0040694 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 2.8e-80 302.8 300 57.3
arahy.Tifrunner.gnm1.ann1.T37JIE Arachis hypogaea HOM05D005868 ORTHO05D006964 3.6e-80 302.4 251 62.2
Ca_25916_v3 Cicer arietinum L. HOM05D005868 ORTHO05D006964 6.9e-79 298.1 256 66.8
Cc06_g08680 Coffea canephora HOM05D005868 ORTHO05D006964 3.4e-78 295.8 199 72.4
EL10Ac8g18635 Beta vulgaris HOM05D005868 ORTHO05D006964 1.9e-76 290.0 253 60.9
Eucgr.C04191 Eucalyptus grandis HOM05D005868 ORTHO05D006964 2.4e-76 289.7 203 69.5
Sc08g0006690 Simmondsia chinensis HOM05D005868 ORTHO05D006964 5.5e-76 288.5 257 66.1
Hund09137 Selenicereus undatus HOM05D005868 ORTHO05D006964 2.1e-75 286.6 271 63.1
Thhalv10023629m.g Eutrema salsugineum HOM05D005868 ORTHO05D006964 7.9e-75 284.6 168 80.4
Ah.09g226020 Amaranthus hybridus HOM05D005868 ORTHO05D006964 1.1e-73 280.8 258 64.7
Prupe.6G277700 Prunus persica HOM05D005868 ORTHO05D006964 2.5e-73 279.6 259 57.1
CARHR115770 Cardamine hirsuta HOM05D005868 ORTHO05D006964 7.4e-73 278.1 164 79.3
AUR62013373 Chenopodium quinoa HOM05D005868 ORTHO05D006964 5.8e-70 268.5 259 64.5
SGA_v2.0_scaffold120G32883 Striga asiatica HOM05D005868 ORTHO05D006964 5.8e-70 268.5 249 65.1
HanXRQChr14g0452021 Helianthus annuus HOM05D005868 ORTHO05D006964 3.2e-68 262.7 235 58.7
CAN.G377.12 Capsicum annuum HOM05D005868 ORTHO05D006964 1.3e-66 257.3 261 54.0
SEGI_01723 Sequoiadendron giganteum HOM05D005868 ORTHO05D006964 2.5e-60 236.5 274 47.8
SalBow5G0777 Salvia bowleyana HOM05D005868 ORTHO05D006964 6.3e-56 221.9 294 48.3
Nitab4.5_0010819g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 2.9e-53 213.0 164 66.5
CDE04G0864 Ceratophyllum demersum HOM05D005868 ORTHO05D006964 1.4e-52 210.7 216 60.6
vmacro20542 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 2.6e-49 199.9 321 43.3
Nitab4.5_0002556g0090 Nicotiana tabacum HOM05D005868 ORTHO05D006964 1.1e-47 194.5 154 64.3
Mapoly0058s0058 Marchantia polymorpha HOM05D005868 ORTHO05D006964 3.2e-44 183.0 270 41.5
MBI04_g07645_MAGBIO Magnolia biondii HOM05D005868 ORTHO05D006964 4.7e-43 179.1 172 57.0
AUR62033475 Chenopodium quinoa HOM05D005868 ORTHO05D006964 1.5e-41 174.1 240 45.4
Pp3c21_8470 Physcomitrium patens HOM05D005868 ORTHO05D006964 1.1e-36 157.9 247 40.5
FAN23G1471 Fragaria x ananassa HOM05D005868 ORTHO05D006964 2.1e-35 153.7 113 69.9
RcHm_v2.0_Chr2g0088781 Rosa chinensis HOM05D005868 ORTHO05D006964 8.8e-34 148.3 85 81.2
FvH4_1g05000 Fragaria vesca HOM05D005868 ORTHO05D006964 7.7e-30 135.2 76 84.2
RcHm_v2.0_Chr2g0088941 Rosa chinensis HOM05D005868 ORTHO05D006964 3.6e-27 126.3 131 52.7
Eucgr.C03944 Eucalyptus grandis HOM05D005868 ORTHO05D006964 4.7e-27 125.9 107 60.7
RcHm_v2.0_Chr2g0088921 Rosa chinensis HOM05D005868 ORTHO05D006964 3.7e-24 116.3 158 46.2
RcHm_v2.0_Chr2g0088761 Rosa chinensis HOM05D005868 ORTHO05D006964 3.7e-16 89.7 75 61.3
CARHR115780 Cardamine hirsuta HOM05D005868 ORTHO05D006964 9.2e-15 85.1 74 54.1
CBR_g783 Chara braunii HOM05D005868 ORTHO05D006964 5.9e-14 82.4 159 34.0
MBI04_g07643_MAGBIO Magnolia biondii HOM05D005868 ORTHO05D006964 5.9e-14 82.4 39 92.3
Eucgr.L03701 Eucalyptus grandis HOM05D005868 ORTHO05D006964 2.3e-13 80.5 62 66.1
FAN02G0970 Fragaria x ananassa HOM05D023359 ORTHO05D006964 1.2e-11 74.7 70 57.1
RcHm_v2.0_Chr3g0491871 Rosa chinensis HOM05D005868 ORTHO05D006964 4.7e-11 72.8 74 55.4
RcHm_v2.0_Chr2g0088771 Rosa chinensis HOM05D005868 ORTHO05D006964 2.3e-10 70.5 37 86.5
RcHm_v2.0_Chr2g0088931 Rosa chinensis HOM05D005868 ORTHO05D006964 2.3e-10 70.5 37 86.5
Psat7g152720 Pisum sativum HOM05D005868 ORTHO05D006964 1.4e-07 61.2 62 46.8
RcHm_v2.0_Chr7g0205611 Rosa chinensis HOM05D005868 ORTHO05D006964 4.1e-07 59.7 57 54.4
RcHm_v2.0_Chr5g0066691 Rosa chinensis HOM05D005868 ORTHO05D006964 2.7e-06 57.0 57 56.1
Solyc01g057003.1 Solanum lycopersicum HOM05D005868 ORTHO05D006964 4.6e-06 56.2 40 60.0


User provided reference genes

Program Settings