Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0015466 Sechium edule HOM05D001997 ORTHO05D005560 5.4e-57 224.2 119 100.0
ClCG03G006590 Citrullus lanatus HOM05D001997 ORTHO05D005560 1.5e-51 206.1 118 91.5
MELO3C002757.2 Cucumis melo HOM05D001997 ORTHO05D005560 9.9e-51 203.4 119 90.8
CsaV3_1G036760 Cucumis sativus L. HOM05D001997 ORTHO05D005560 9.9e-51 203.4 119 90.8
CiPaw.02G100900 Carya illinoinensis HOM05D001997 ORTHO05D005560 8.1e-45 183.7 121 81.8
Potri.013G125200 Populus trichocarpa HOM05D001997 ORTHO05D005560 1.8e-44 182.6 122 77.0
QL04p073793 Quercus lobata HOM05D001997 ORTHO05D005560 1.8e-44 182.6 108 86.1
AL4G42460 Arabidopsis lyrata HOM05D001997 ORTHO05D005560 4.0e-44 181.4 109 85.3
QL10p054519 Quercus lobata HOM05D001997 ORTHO05D005560 4.0e-44 181.4 120 80.8
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 5.3e-44 181.0 120 80.8
Manes.11G130400 Manihot esculenta HOM05D001997 ORTHO05D005560 6.9e-44 180.6 121 81.0
Duzib268G1453 Durio zibethinus HOM05D001997 ORTHO05D005560 9.0e-44 180.3 120 82.5
Carub.0004s2617 Capsella rubella HOM05D001997 ORTHO05D005560 1.2e-43 179.9 109 84.4
QL10p053341 Quercus lobata HOM05D001997 ORTHO05D005560 2.0e-43 179.1 120 80.0
LjContig00312_ERROPOS870357g0002022 Lotus japonicus HOM05D001997 ORTHO05D005560 2.6e-43 178.7 119 79.8
Manes.04G036800 Manihot esculenta HOM05D001997 ORTHO05D005560 2.6e-43 178.7 121 79.3
BcaB01g03370 Brassica carinata HOM05D001997 ORTHO05D005560 3.4e-43 178.3 109 84.4
BcaC01g05223 Brassica carinata HOM05D001997 ORTHO05D005560 3.4e-43 178.3 109 83.5
TPR.G15125 Trifolium pratense HOM05D001997 ORTHO05D005560 4.5e-43 177.9 119 79.8
VMungo1127G1119 Vigna mungo HOM05D001997 ORTHO05D005560 5.8e-43 177.6 109 83.5
TWI63G1293 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 7.6e-43 177.2 121 76.9
C03p29060 Brassica napus HOM05D001997 ORTHO05D005560 9.9e-43 176.8 108 83.3
BolC3t15260H Brassica oleracea HOM05D001997 ORTHO05D005560 9.9e-43 176.8 108 83.3
TWI15G0247 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 9.9e-43 176.8 121 77.7
Dinv02939 Davidia involucrata HOM05D001997 ORTHO05D005560 1.3e-42 176.4 109 81.7
Dinv33196 Davidia involucrata HOM05D001997 ORTHO05D005560 1.7e-42 176.0 116 81.0
Phvul.011G004600 Phaseolus vulgaris HOM05D001997 ORTHO05D005560 1.7e-42 176.0 109 83.5
Actinidia11445 Actinidia chinensis HOM05D001997 ORTHO05D005560 2.2e-42 175.6 117 77.8
BcaB02g08911 Brassica carinata HOM05D001997 ORTHO05D005560 2.2e-42 175.6 123 78.0
BcaC02g12374 Brassica carinata HOM05D001997 ORTHO05D005560 2.2e-42 175.6 123 78.0
CiPaw.01G171400 Carya illinoinensis HOM05D001997 ORTHO05D005560 2.2e-42 175.6 121 81.0
Glyma.09G232500 Glycine max HOM05D001997 ORTHO05D005560 2.2e-42 175.6 109 82.6
Gohir.A02G091400 Gossypium hirsutum HOM05D001997 ORTHO05D005560 2.2e-42 175.6 120 79.2
A03p24380 Brassica napus HOM05D001997 ORTHO05D005560 2.9e-42 175.3 107 82.2
Gohir.D02G109200 Gossypium hirsutum HOM05D001997 ORTHO05D005560 2.9e-42 175.3 120 79.2
Gorai.005G124400 Gossypium raimondii HOM05D001997 ORTHO05D005560 2.9e-42 175.3 120 79.2
PGR004G0495 Punica granatum HOM05D001997 ORTHO05D005560 2.9e-42 175.3 119 79.0
BraA05t19377Z Brassica rapa HOM05D001997 ORTHO05D005560 3.8e-42 174.9 122 77.9
Manes.16G067100 Manihot esculenta HOM05D001997 ORTHO05D005560 4.9e-42 174.5 121 77.7
Sp4g25740 Schrenkiella parvula HOM05D001997 ORTHO05D005560 4.9e-42 174.5 122 77.9
BraA03t11647Z Brassica rapa HOM05D001997 ORTHO05D005560 6.4e-42 174.1 106 83.0
Thhalv10001685m.g Eutrema salsugineum HOM05D001997 ORTHO05D005560 6.4e-42 174.1 109 82.6
Actinidia27107 Actinidia chinensis HOM05D001997 ORTHO05D005560 8.4e-42 173.7 117 76.9
A05p03900 Brassica napus HOM05D001997 ORTHO05D005560 8.4e-42 173.7 120 78.3
C04p04630 Brassica napus HOM05D001997 ORTHO05D005560 8.4e-42 173.7 122 77.9
BolC4t22094H Brassica oleracea HOM05D001997 ORTHO05D005560 8.4e-42 173.7 122 77.9
Medtr3g110098 Medicago truncatula HOM05D001997 ORTHO05D005560 8.4e-42 173.7 121 76.0
BraA04t18752Z Brassica rapa HOM05D001997 ORTHO05D005560 1.1e-41 173.3 122 77.0
Eucgr.A00017 Eucalyptus grandis HOM05D001997 ORTHO05D005560 1.1e-41 173.3 114 79.8
Lalb_Chr02g0159681 Lupinus albus HOM05D001997 ORTHO05D005560 1.1e-41 173.3 109 81.7
BcaB06g29333 Brassica carinata HOM05D001997 ORTHO05D005560 1.4e-41 172.9 123 76.4
A04p32920 Brassica napus HOM05D001997 ORTHO05D005560 1.4e-41 172.9 124 75.8
Psat2g000880 Pisum sativum HOM05D001997 ORTHO05D005560 1.4e-41 172.9 119 76.5
THA.LOC104802323 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 1.4e-41 172.9 123 76.4
Aa31LG1G25360 Aethionema arabicum HOM05D001997 ORTHO05D005560 5.4e-41 171.0 121 77.7
arahy.Tifrunner.gnm1.ann1.U4TVD9 Arachis hypogaea HOM05D001997 ORTHO05D005560 9.3e-41 170.2 119 76.5
Hma1.2p1_0855F.1_g228990 Hydrangea macrophylla HOM05D001997 ORTHO05D005560 1.2e-40 169.9 108 80.6
CSS0006622 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 1.6e-40 169.5 116 76.7
CARHR138820 Cardamine hirsuta HOM05D001997 ORTHO05D005560 1.6e-40 169.5 101 85.1
Rhsim02G0083500 Rhododendron simsii HOM05D001997 ORTHO05D005560 2.1e-40 169.1 117 76.9
CANSAT56G1366 Cannabis sativa HOM05D001997 ORTHO05D005560 2.7e-40 168.7 121 76.9
TAR362G0574 Trochodendron aralioides HOM05D001997 ORTHO05D005560 2.7e-40 168.7 117 75.2
arahy.Tifrunner.gnm1.ann1.HCPJ2X Arachis hypogaea HOM05D001997 ORTHO05D005560 4.6e-40 167.9 119 74.8
CANSAT56G3121 Cannabis sativa HOM05D001997 ORTHO05D005560 7.9e-40 167.2 121 76.0
Prupe.1G570200 Prunus persica HOM05D001997 ORTHO05D005560 1.0e-39 166.8 120 75.0
Thecc.04G168000 Theobroma cacao HOM05D001997 ORTHO05D005560 1.3e-39 166.4 120 75.8
arahy.Tifrunner.gnm1.ann1.NB68NZ Arachis hypogaea HOM05D001997 ORTHO05D005560 1.8e-39 166.0 119 74.8
FAN13G1284 Fragaria x ananassa HOM05D001997 ORTHO05D005560 6.7e-39 164.1 101 82.2
MD15G1424200 Malus domestica HOM05D001997 ORTHO05D005560 6.7e-39 164.1 120 73.3
FvH4_5g22590 Fragaria vesca HOM05D001997 ORTHO05D005560 8.7e-39 163.7 100 83.0
FAN04G0119 Fragaria x ananassa HOM05D001997 ORTHO05D005560 8.7e-39 163.7 100 83.0
FAN08G3153 Fragaria x ananassa HOM05D001997 ORTHO05D005560 8.7e-39 163.7 100 83.0
FAN18G2915 Fragaria x ananassa HOM05D001997 ORTHO05D005560 8.7e-39 163.7 100 83.0
Lj3g0018936 Lotus japonicus HOM05D001997 ORTHO05D005560 8.7e-39 163.7 126 73.0
Sc01g0006970 Simmondsia chinensis HOM05D001997 ORTHO05D005560 1.5e-38 162.9 104 77.9
Nn1g09687 Nelumbo nucifera HOM05D001997 ORTHO05D005560 3.3e-38 161.8 114 72.8
RcHm_v2.0_Chr7g0210361 Rosa chinensis HOM05D001997 ORTHO05D005560 3.3e-38 161.8 100 82.0
CSS0005460 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 4.3e-38 161.4 117 74.4
CSS0042570 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 4.3e-38 161.4 117 74.4
HanXRQChr14g0432491 Helianthus annuus HOM05D001997 ORTHO05D005560 7.4e-38 160.6 117 73.5
SalBow2G2973 Salvia bowleyana HOM05D001997 ORTHO05D005560 7.4e-38 160.6 109 75.2
Ciclev10022891m.g Citrus clementina HOM05D001997 ORTHO05D005560 9.6e-38 160.2 123 69.1
Atru.chr4.1389 Acer truncatum HOM05D001997 ORTHO05D005560 1.3e-37 159.8 121 71.1
THA.LOC104819704 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 1.6e-37 159.5 122 72.1
Aqoxy3G00613 Aquilegia oxysepala HOM05D001997 ORTHO05D005560 2.1e-37 159.1 117 71.8
Oeu032138.1 Olea europaea HOM05D001997 ORTHO05D005560 2.8e-37 158.7 116 72.4
Ah.07g202650 Amaranthus hybridus HOM05D001997 ORTHO05D005560 3.7e-37 158.3 98 76.5
MSTRG.22024 Avicennia marina HOM05D001997 ORTHO05D005560 4.8e-37 157.9 104 76.9
AUR62026225 Chenopodium quinoa HOM05D001997 ORTHO05D005560 6.2e-37 157.5 104 74.0
Migut.N03073 Erythranthe guttata HOM05D001997 ORTHO05D005560 1.1e-36 156.8 120 69.2
Cc10_g09020 Coffea canephora HOM05D001997 ORTHO05D005560 1.8e-36 156.0 108 74.1
AUR62026408 Chenopodium quinoa HOM05D001997 ORTHO05D005560 2.4e-36 155.6 100 76.0
Solyc06g053385.2 Solanum lycopersicum HOM05D001997 ORTHO05D005560 2.4e-36 155.6 109 73.4
Sopen06g018440 Solanum pennellii HOM05D001997 ORTHO05D005560 2.4e-36 155.6 109 73.4
PGSC0003DMG400016301 Solanum tuberosum HOM05D001997 ORTHO05D005560 3.1e-36 155.2 109 73.4
Migut.M00095 Erythranthe guttata HOM05D001997 ORTHO05D005560 4.0e-36 154.8 117 70.9
MD08G1231600 Malus domestica HOM05D001997 ORTHO05D005560 4.0e-36 154.8 120 70.8
Cpa.g.sc9.355 Carica papaya HOM05D001997 ORTHO05D005560 5.3e-36 154.5 94 81.9
SGA_v2.0_scaffold25G10995 Striga asiatica HOM05D000987 ORTHO05D000831 5.3e-36 154.5 127 67.7
HPP92_004665 Vanilla planifolia HOM05D001997 ORTHO05D005560 6.9e-36 154.1 109 68.8
Nitab4.5_0001586g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 1.5e-35 152.9 117 69.2
Nitab4.5_0004056g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 1.5e-35 152.9 117 69.2
AT2G43640 Arabidopsis thaliana HOM05D001997 ORTHO05D005560 2.0e-35 152.5 109 75.2
unitig_27.g24921 Utricularia gibba HOM05D001997 ORTHO05D005560 5.8e-35 151.0 117 70.1
PSO675G0853 Papaver somniferum HOM05D001997 ORTHO05D005560 7.6e-35 150.6 117 69.2
Lsat_1_v5_gn_3_138061 Lactuca sativa HOM05D001997 ORTHO05D005560 1.0e-34 150.2 96 78.1
Os04g0623700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D005560 1.7e-34 149.4 112 66.1
Peaxi162Scf00180g00117 Petunia axillaris HOM05D001997 ORTHO05D005560 1.7e-34 149.4 117 67.5
GSVIVG01038131001 Vitis vinifera HOM05D001997 ORTHO05D005560 2.9e-34 148.7 101 79.2
Glyma.12G004000 Glycine max HOM05D001997 ORTHO05D005560 6.5e-34 147.5 104 76.0
PSO017G7267 Papaver somniferum HOM05D001997 ORTHO05D005560 6.5e-34 147.5 117 67.5
MBI08_g25560_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D005560 8.4e-34 147.1 119 67.2
Ah.13g073580 Amaranthus hybridus HOM05D000242 ORTHO05D005560 1.1e-33 146.7 98 72.4
EL10Ac3g06063 Beta vulgaris HOM05D001997 ORTHO05D005560 1.1e-33 146.7 115 66.1
ATR0075G039 Amborella trichopoda HOM05D001997 ORTHO05D005560 1.4e-33 146.4 104 72.1
CSS0004625 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 1.4e-33 146.4 108 72.2
CAN.G103.22 Capsicum annuum HOM05D001997 ORTHO05D005560 4.2e-33 144.8 117 67.5
Zm00001eb070260 Zea mays HOM05D001997 ORTHO05D005560 1.6e-32 142.9 117 64.1
FAN18G1136 Fragaria x ananassa HOM05D001997 ORTHO05D005560 2.3e-31 139.0 85 81.2
C04p70600 Brassica napus HOM05D001997 ORTHO05D005560 1.1e-30 136.7 103 71.8
Atru.chr12.1238 Acer truncatum HOM05D001997 ORTHO05D005560 2.6e-27 125.6 103 64.1
DCAR_003034 Daucus carota HOM05D001997 ORTHO05D005560 2.6e-27 125.6 106 66.0
Mapoly0092s0041 Marchantia polymorpha HOM05D001997 ORTHO05D005560 2.2e-26 122.5 107 59.8
Pp3c22_3390 Physcomitrium patens HOM05D001997 ORTHO05D005560 6.5e-26 120.9 112 55.4
TAR633G1661 Trochodendron aralioides HOM05D001997 ORTHO05D005560 5.5e-25 117.9 84 75.0
BcaC02g07159 Brassica carinata HOM05D001997 ORTHO05D005560 7.9e-24 114.0 92 68.5
BolC4t28562H Brassica oleracea HOM05D001997 ORTHO05D005560 7.9e-24 114.0 92 68.5
arahy.Tifrunner.gnm1.ann1.B0USY3 Arachis hypogaea HOM05D001997 ORTHO05D005560 1.0e-23 113.6 87 70.1
Sc18g0007150 Simmondsia chinensis HOM05D001997 ORTHO05D005560 1.8e-23 112.8 67 82.1
Hund12390 Selenicereus undatus HOM05D001997 ORTHO05D005560 3.3e-22 108.6 86 67.4
Oeu007674.1 Olea europaea HOM05D001997 ORTHO05D005560 9.7e-22 107.1 68 76.5
arahy.Tifrunner.gnm1.ann1.9S24RV Arachis hypogaea HOM05D001997 ORTHO05D005560 6.3e-21 104.4 69 75.4
MSTRG.24567 Avicennia marina HOM05D001997 ORTHO05D005560 1.1e-20 103.6 70 74.3
CBR_g30248 Chara braunii HOM05D001997 ORTHO05D005560 2.0e-19 99.4 100 49.0
CDE07G0374 Ceratophyllum demersum HOM05D001997 ORTHO05D005560 7.7e-19 97.4 64 71.9
arahy.Tifrunner.gnm1.ann1.IP5VZQ Arachis hypogaea HOM05D001997 ORTHO05D005560 2.5e-17 92.4 74 64.9
Psat6g024000 Pisum sativum HOM05D001997 ORTHO05D005560 2.5e-17 92.4 106 54.7
CARHR119270 Cardamine hirsuta HOM05D001997 ORTHO05D005560 2.7e-16 89.0 57 77.2
arahy.Tifrunner.gnm1.ann1.F176HW Arachis hypogaea HOM05D001997 ORTHO05D005560 3.6e-16 88.6 85 58.8
arahy.Tifrunner.gnm1.ann1.TRD1UF Arachis hypogaea HOM05D001997 ORTHO05D005560 7.9e-16 87.4 73 63.0
Cc10_g09000 Coffea canephora HOM05D001997 ORTHO05D005560 7.9e-16 87.4 56 75.0
arahy.Tifrunner.gnm1.ann1.E4AJF3 Arachis hypogaea HOM05D001997 ORTHO05D005560 3.3e-14 82.0 68 64.7
AagrBONN_evm.TU.Sc2ySwM_228.2619 Anthoceros agrestis HOM05D001997 ORTHO05D005560 7.4e-14 80.9 86 52.3
MCO03G443 Micromonas commoda HOM05D001997 ORTHO05D005560 8.2e-13 77.4 109 46.8
Cre01.g031200 Chlamydomonas reinhardtii HOM05D001997 ORTHO05D005560 2.4e-12 75.9 103 44.7
arahy.Tifrunner.gnm1.ann1.FLH3LF Arachis hypogaea HOM05D001997 ORTHO05D005560 3.4e-11 72.0 82 51.2
CAN.G136.16 Capsicum annuum HOM05D001997 ORTHO05D005560 2.9e-10 68.9 53 64.2
Hund03190 Selenicereus undatus HOM05D000031 ORTHO05D000030 1.4e-09 66.6 60 55.0
PRCOL_00005629 Prasinoderma coloniale HOM05D001997 ORTHO05D005560 2.7e-08 62.4 120 35.0
Glyma.10G156400 Glycine max HOM05D001997 ORTHO05D005560 1.0e-07 60.5 40 75.0
Hund12391 Selenicereus undatus HOM05D001997 ORTHO05D005560 1.8e-07 59.7 43 69.8
arahy.Tifrunner.gnm1.ann1.XW4Y8U Arachis hypogaea HOM05D001997 ORTHO05D005560 3.0e-07 58.9 75 45.3
EL10Ac1g01241 Beta vulgaris HOM05D001714 ORTHO05D005560 8.8e-07 57.4 103 40.8
EL10Ac7g17594 Beta vulgaris HOM05D001714 ORTHO05D001932 1.5e-06 56.6 63 50.8
arahy.Tifrunner.gnm1.ann1.PZN0G5 Arachis hypogaea HOM05D001997 ORTHO05D005560 2.6e-06 55.8 38 68.4
EL10Ac5g10857 Beta vulgaris HOM05D001714 ORTHO05D001932 2.6e-06 55.8 96 40.6


User provided reference genes

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