Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0015421 Sechium edule HOM05D004281 ORTHO05D004839 9.0e-125 450.3 231 100.0
CsaV3_6G032410 Cucumis sativus L. HOM05D004281 ORTHO05D004839 9.7e-95 350.5 229 80.3
Sed0022244 Sechium edule HOM05D004281 ORTHO05D004839 2.2e-94 349.4 229 79.5
MELO3C011439.2 Cucumis melo HOM05D004281 ORTHO05D004839 1.3e-91 340.1 229 78.2
Nn1g09410 Nelumbo nucifera HOM05D004281 ORTHO05D004839 1.6e-68 263.5 230 62.6
arahy.Tifrunner.gnm1.ann1.HHGT95 Arachis hypogaea HOM05D004281 ORTHO05D004839 1.7e-67 260.0 231 60.6
arahy.Tifrunner.gnm1.ann1.MYV34H Arachis hypogaea HOM05D004281 ORTHO05D004839 1.7e-67 260.0 225 62.7
Glyma.08G087500 Glycine max HOM05D004281 ORTHO05D004839 1.7e-67 260.0 224 61.6
CiPaw.01G202700 Carya illinoinensis HOM05D004281 ORTHO05D004839 2.3e-67 259.6 199 68.8
Manes.02G102600 Manihot esculenta HOM05D004281 ORTHO05D004839 2.3e-67 259.6 215 62.8
ClCG08G010210 Citrullus lanatus HOM05D004281 ORTHO05D004839 3.9e-67 258.8 139 91.4
RcHm_v2.0_Chr2g0084411 Rosa chinensis HOM05D004281 ORTHO05D004839 5.0e-67 258.5 169 75.1
Medtr4g094700 Medicago truncatula HOM05D004281 ORTHO05D004839 6.6e-67 258.1 223 60.5
Lalb_Chr12g0209091 Lupinus albus HOM05D004281 ORTHO05D004839 8.6e-67 257.7 223 61.0
COL.COLO4_27572 Corchorus olitorius HOM05D004281 ORTHO05D004839 1.1e-66 257.3 214 61.2
Potri.017G001800 Populus trichocarpa HOM05D004281 ORTHO05D004839 1.1e-66 257.3 193 66.8
Dinv24743 Davidia involucrata HOM05D004281 ORTHO05D004839 1.9e-66 256.5 204 67.2
ECA233G0955 Erigeron canadensis HOM05D004281 ORTHO05D004839 2.5e-66 256.1 235 58.7
TAR365G0664 Trochodendron aralioides HOM05D004281 ORTHO05D004839 4.3e-66 255.4 207 63.3
Eucgr.F02801 Eucalyptus grandis HOM05D004281 ORTHO05D004839 5.6e-66 255.0 188 68.1
Thhalv10001807m.g Eutrema salsugineum HOM05D004281 ORTHO05D004839 5.6e-66 255.0 195 64.1
FvH4_1g00110 Fragaria vesca HOM05D004281 ORTHO05D004839 5.6e-66 255.0 166 74.7
Psat7g088840 Pisum sativum HOM05D004281 ORTHO05D004839 7.3e-66 254.6 166 72.9
Prupe.7G270800 Prunus persica HOM05D004281 ORTHO05D004839 9.5e-66 254.2 236 61.0
Sp4g26130 Schrenkiella parvula HOM05D004281 ORTHO05D004839 9.5e-66 254.2 208 62.5
Carub.0004s2660 Capsella rubella HOM05D004281 ORTHO05D004839 1.2e-65 253.8 202 63.9
PGR142G2669 Punica granatum HOM05D004281 ORTHO05D004839 1.6e-65 253.4 236 59.3
Eucgr.L01202 Eucalyptus grandis HOM05D004281 ORTHO05D004839 2.8e-65 252.7 188 67.0
Thecc.05G001000 Theobroma cacao HOM05D004281 ORTHO05D004839 2.8e-65 252.7 191 68.1
FAN15G1026 Fragaria x ananassa HOM05D004281 ORTHO05D004839 3.6e-65 252.3 169 73.4
MD15G1142400 Malus domestica HOM05D004281 ORTHO05D004839 3.6e-65 252.3 169 71.0
PSO675G2617 Papaver somniferum HOM05D004281 ORTHO05D004839 3.6e-65 252.3 212 60.4
THA.LOC104802349 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 3.6e-65 252.3 198 64.1
AL4G42920 Arabidopsis lyrata HOM05D004281 ORTHO05D004839 4.7e-65 251.9 195 64.6
Lalb_Chr13g0292401 Lupinus albus HOM05D004281 ORTHO05D004839 6.2e-65 251.5 223 60.5
Psat5g058760 Pisum sativum HOM05D004281 ORTHO05D004839 6.2e-65 251.5 191 65.4
THA.LOC104804375 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 6.2e-65 251.5 186 67.2
AT2G44050 Arabidopsis thaliana HOM05D004281 ORTHO05D004839 8.0e-65 251.1 195 64.1
Phvul.002G189800 Phaseolus vulgaris HOM05D004281 ORTHO05D004839 8.0e-65 251.1 203 65.0
CDE09G0590 Ceratophyllum demersum HOM05D004281 ORTHO05D004839 1.1e-64 250.8 213 61.5
Aa31LG1G25720 Aethionema arabicum HOM05D004281 ORTHO05D004839 1.4e-64 250.4 195 64.1
PSO732G0016 Papaver somniferum HOM05D004281 ORTHO05D004839 1.8e-64 250.0 212 60.4
A03p24650 Brassica napus HOM05D004281 ORTHO05D004839 2.3e-64 249.6 196 64.8
BraA03t11671Z Brassica rapa HOM05D004281 ORTHO05D004839 2.3e-64 249.6 196 64.8
CSS0036502 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 2.3e-64 249.6 177 71.8
Ciclev10022149m.g Citrus clementina HOM05D004281 ORTHO05D004839 2.3e-64 249.6 219 60.7
FvH4_2g10600 Fragaria vesca HOM05D004281 ORTHO05D004839 2.3e-64 249.6 228 59.6
FAN24G2282 Fragaria x ananassa HOM05D004281 ORTHO05D004839 2.3e-64 249.6 228 59.6
Rhsim09G0002300 Rhododendron simsii HOM05D000705 ORTHO05D002970 2.3e-64 249.6 192 67.2
Aa31LG10G14140 Aethionema arabicum HOM05D004281 ORTHO05D004839 3.1e-64 249.2 199 63.8
vmacro00726 Vaccinium macrocarpon HOM05D004281 ORTHO05D004839 3.1e-64 249.2 167 73.7
Atru.chr3.1980 Acer truncatum HOM05D004281 ORTHO05D004839 4.0e-64 248.8 216 61.1
QL10p065802 Quercus lobata HOM05D004281 ORTHO05D004839 4.0e-64 248.8 221 60.6
BolC3t15286H Brassica oleracea HOM05D004281 ORTHO05D004839 5.2e-64 248.4 191 65.4
Lj4g0008259 Lotus japonicus HOM05D004281 ORTHO05D004839 5.2e-64 248.4 223 59.6
GSVIVG01038261001 Vitis vinifera HOM05D004281 ORTHO05D004839 5.2e-64 248.4 164 74.4
Atru.chr8.1217 Acer truncatum HOM05D004281 ORTHO05D004839 8.9e-64 247.7 215 61.9
Actinidia18388 Actinidia chinensis HOM05D004281 ORTHO05D004839 8.9e-64 247.7 193 66.8
Gohir.A04G135700 Gossypium hirsutum HOM05D004281 ORTHO05D004839 8.9e-64 247.7 193 65.3
Gohir.D04G178800 Gossypium hirsutum HOM05D004281 ORTHO05D004839 8.9e-64 247.7 193 65.3
Gorai.012G171900 Gossypium raimondii HOM05D004281 ORTHO05D004839 8.9e-64 247.7 193 65.3
MSTRG.24546 Avicennia marina HOM05D004281 ORTHO05D004839 1.2e-63 247.3 166 69.9
CSS0013668 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 1.2e-63 247.3 177 71.2
Aqoxy7G00623 Aquilegia oxysepala HOM05D004281 ORTHO05D004839 2.0e-63 246.5 201 63.2
Gohir.D11G011300 Gossypium hirsutum HOM05D004281 ORTHO05D004839 3.4e-63 245.7 193 64.2
Gorai.007G012700 Gossypium raimondii HOM05D004281 ORTHO05D004839 3.4e-63 245.7 193 64.2
BcaB01g03334 Brassica carinata HOM05D004281 ORTHO05D004839 4.4e-63 245.4 190 64.2
Potri.007G146000 Populus trichocarpa HOM05D004281 ORTHO05D004839 5.8e-63 245.0 205 64.9
TWI15G0067 Tripterygium wilfordii HOM05D004281 ORTHO05D004839 7.5e-63 244.6 231 58.9
CANSAT78G2301 Cannabis sativa HOM05D004281 ORTHO05D004839 9.8e-63 244.2 203 63.5
CARHR139210 Cardamine hirsuta HOM05D004281 ORTHO05D004839 9.8e-63 244.2 195 61.5
Gohir.A11G012100 Gossypium hirsutum HOM05D004281 ORTHO05D004839 1.7e-62 243.4 193 63.7
BolC4t28587H Brassica oleracea HOM05D004281 ORTHO05D004839 2.9e-62 242.7 199 61.3
HanXRQChr13g0392191 Helianthus annuus HOM05D004281 ORTHO05D004839 2.9e-62 242.7 186 63.4
Sabra17G0005800 Salix brachista HOM05D004281 ORTHO05D004839 2.9e-62 242.7 215 59.1
Sopen08g005770 Solanum pennellii HOM05D004281 ORTHO05D004839 6.4e-62 241.5 193 63.7
VMungo0251G0005 Vigna mungo HOM05D004281 ORTHO05D004839 6.4e-62 241.5 210 62.9
A04p33170 Brassica napus HOM05D004281 ORTHO05D004839 8.3e-62 241.1 199 61.3
Solyc08g015660.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 8.3e-62 241.1 193 63.7
BcaC02g07139 Brassica carinata HOM05D004281 ORTHO05D004839 1.1e-61 240.7 199 60.8
Cc00_g16880 Coffea canephora HOM05D004281 ORTHO05D004839 1.1e-61 240.7 195 62.6
BcaB06g29512 Brassica carinata HOM05D004281 ORTHO05D004839 1.4e-61 240.4 161 68.9
Solyc12g096590.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 1.4e-61 240.4 217 58.5
BcaB06g29353 Brassica carinata HOM05D004281 ORTHO05D004839 1.9e-61 240.0 190 63.7
HanXRQChr13g0392171 Helianthus annuus HOM05D004281 ORTHO05D004839 2.4e-61 239.6 167 66.5
Migut.G00913 Erythranthe guttata HOM05D004281 ORTHO05D004839 4.1e-61 238.8 157 71.3
Sopen12g032420 Solanum pennellii HOM05D004281 ORTHO05D004839 4.1e-61 238.8 217 58.1
PGSC0003DMG400025217 Solanum tuberosum HOM05D004281 ORTHO05D004839 4.1e-61 238.8 193 63.2
BraA04t18776Z Brassica rapa HOM05D004281 ORTHO05D004839 5.4e-61 238.4 190 63.2
PGR142G1214 Punica granatum HOM05D004281 ORTHO05D004839 2.1e-60 236.5 229 55.9
DCAR_027490 Daucus carota HOM05D004281 ORTHO05D004839 2.7e-60 236.1 163 71.2
PGSC0003DMG400029273 Solanum tuberosum HOM05D004281 ORTHO05D004839 4.6e-60 235.3 216 58.3
C03p29390 Brassica napus HOM05D004281 ORTHO05D004839 1.3e-59 233.8 218 58.3
CAN.G607.11 Capsicum annuum HOM05D004281 ORTHO05D004839 1.3e-59 233.8 162 69.8
SGA_v2.0_scaffold37G14906 Striga asiatica HOM05D004281 ORTHO05D004839 1.3e-59 233.8 195 61.5
FAN26G2986 Fragaria x ananassa HOM05D000705 ORTHO05D004839 1.7e-59 233.4 178 67.4
HPP92_005601 Vanilla planifolia HOM05D004281 ORTHO05D004839 1.7e-59 233.4 192 62.0
EL10Ac4g08581 Beta vulgaris HOM05D004281 ORTHO05D004839 3.0e-59 232.6 168 64.9
Ca_18245_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 3.9e-59 232.3 184 63.6
Cc05_g03580 Coffea canephora HOM05D004281 ORTHO05D004839 5.1e-59 231.9 169 66.3
EL10Ac3g06178 Beta vulgaris HOM05D004281 ORTHO05D004839 8.6e-59 231.1 230 55.7
AUR62023693 Chenopodium quinoa HOM05D004281 ORTHO05D004839 1.9e-58 229.9 230 53.0
Lsat_1_v5_gn_8_33320 Lactuca sativa HOM05D004281 ORTHO05D004839 2.5e-58 229.6 167 62.3
Nitab4.5_0000668g0110 Nicotiana tabacum HOM05D004281 ORTHO05D004839 2.5e-58 229.6 200 60.5
Nitab4.5_0001110g0040 Nicotiana tabacum HOM05D004281 ORTHO05D004839 2.5e-58 229.6 200 60.5
BcaC01g05189 Brassica carinata HOM05D001249 ORTHO05D003440 3.3e-58 229.2 185 63.2
Peaxi162Scf00459g00125 Petunia axillaris HOM05D004281 ORTHO05D004839 7.3e-58 228.0 164 68.9
C04p70870 Brassica napus HOM05D001249 ORTHO05D003440 9.5e-58 227.6 189 60.3
CAN.G566.44 Capsicum annuum HOM05D004281 ORTHO05D004839 1.2e-57 227.3 217 55.8
Haze_11113 Corylus avellana HOM05D004281 ORTHO05D004839 2.1e-57 226.5 142 76.8
Oeu014981.1 Olea europaea HOM05D004281 ORTHO05D004839 4.7e-57 225.3 148 74.3
Lsat_1_v5_gn_8_33340 Lactuca sativa HOM05D004281 ORTHO05D004839 6.2e-57 224.9 149 70.5
unitig_578.g16718 Utricularia gibba HOM05D000499 ORTHO05D007471 6.2e-57 224.9 168 63.1
TPR.G31246 Trifolium pratense HOM05D004281 ORTHO05D004839 1.1e-56 224.2 184 62.0
FAN28G0724 Fragaria x ananassa HOM05D006787 ORTHO05D008366 1.8e-56 223.4 254 52.4
Pp3c27_2710 Physcomitrium patens HOM05D004281 ORTHO05D004839 3.1e-56 222.6 156 64.1
Cpa.g.sc9.245 Carica papaya HOM05D004281 ORTHO05D004839 4.0e-56 222.2 218 56.0
Pp3c16_5700 Physcomitrium patens HOM05D004281 ORTHO05D004839 1.2e-55 220.7 210 53.8
AUR62002492 Chenopodium quinoa HOM05D004281 ORTHO05D004839 2.0e-55 219.9 246 50.0
Ah.13g073140 Amaranthus hybridus HOM05D000705 ORTHO05D004839 3.7e-54 215.7 158 64.6
Os04g0497400 Oryza sativa ssp. japonica HOM05D004281 ORTHO05D004839 5.4e-53 211.8 154 65.6
Zm00001eb068110 Zea mays HOM05D004281 ORTHO05D004839 5.4e-53 211.8 165 60.6
Cfa008529 Carpinus fangiana HOM05D006787 ORTHO05D008366 9.2e-53 211.1 133 76.7
RcHm_v2.0_Chr7g0227511 Rosa chinensis HOM05D004281 ORTHO05D004839 9.2e-53 211.1 129 79.1
Mapoly0120s0006 Marchantia polymorpha HOM05D004281 ORTHO05D004839 1.7e-51 206.8 162 59.9
QL10p064677 Quercus lobata HOM05D004281 ORTHO05D004839 1.7e-51 206.8 139 72.7
Zm00001eb432360 Zea mays HOM05D004281 ORTHO05D004839 3.0e-51 206.1 194 54.1
SMO198G0030 Selaginella moellendorffii HOM05D004281 ORTHO05D004839 5.1e-51 205.3 153 60.1
Nitab4.5_0001091g0070 Nicotiana tabacum HOM05D004281 ORTHO05D004839 6.6e-51 204.9 210 52.9
ATR0743G183 Amborella trichopoda HOM05D004281 ORTHO05D004839 3.3e-50 202.6 127 74.0
Lj4A426G8 Lonicera japonica HOM05D004281 ORTHO05D004839 2.8e-49 199.5 228 52.6
CBR_g29269 Chara braunii HOM05D004281 ORTHO05D004839 6.4e-46 188.3 140 60.7
Duzib212G0492 Durio zibethinus HOM05D004281 ORTHO05D004839 8.4e-46 188.0 146 65.8
TPR.G18090 Trifolium pratense HOM05D004281 ORTHO05D004839 8.4e-46 188.0 134 68.7
Cre02.g088850 Chlamydomonas reinhardtii HOM05D004281 ORTHO05D004839 1.4e-45 187.2 145 60.0
BcaB01g03343 Brassica carinata HOM05D001249 ORTHO05D003440 6.0e-44 181.8 164 59.1
MBI07_g44299_MAGBIO Magnolia biondii HOM05D004281 ORTHO05D004839 8.7e-43 177.9 139 66.2
Nitab4.5_0004802g0010 Nicotiana tabacum HOM05D004281 ORTHO05D004839 8.7e-43 177.9 180 54.4
Sc13g0007610 Simmondsia chinensis HOM05D004281 ORTHO05D004839 8.7e-43 177.9 191 54.5
QL08p018116 Quercus lobata HOM05D004281 ORTHO05D004839 5.6e-42 175.3 187 55.6
Nitab4.5_0010298g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 4.7e-41 172.2 212 47.6
unitig_85.g27225 Utricularia gibba HOM05D004281 ORTHO05D004839 1.9e-37 160.2 106 71.7
Hund22685 Selenicereus undatus HOM05D001165 ORTHO05D004839 9.3e-37 157.9 97 71.1
RcHm_v2.0_Chr7g0214271 Rosa chinensis HOM05D004281 ORTHO05D004839 1.6e-36 157.1 97 78.4
Nitab4.5_0000013g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 2.1e-36 156.8 169 52.7
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 6.0e-36 155.2 148 49.3
Duzib093G0607 Durio zibethinus HOM05D004281 ORTHO05D004839 4.8e-33 145.6 127 59.1
Ca_28575_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 8.4e-30 134.8 132 44.7
CSS0034557 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 2.1e-28 130.2 103 65.0
Cc00_g08810 Coffea canephora HOM05D004281 ORTHO05D004839 6.0e-28 128.6 77 79.2
Cc00_g12430 Coffea canephora HOM05D004281 ORTHO05D004839 8.7e-27 124.8 77 77.9
CSS0012879 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 1.1e-26 124.4 103 63.1
Lj5A837G66 Lonicera japonica HOM05D004281 ORTHO05D004839 4.3e-26 122.5 74 75.7
Cc00_g23590 Coffea canephora HOM05D004281 ORTHO05D004839 5.6e-26 122.1 97 60.8
CSS0024434 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 7.4e-26 121.7 105 61.9
C08p46660 Brassica napus HOM05D004281 ORTHO05D004839 6.9e-24 115.2 103 55.3
C05p19750 Brassica napus HOM05D004281 ORTHO05D004839 8.4e-22 108.2 101 52.5
BolC8t52208H Brassica oleracea HOM05D004281 ORTHO05D004839 4.2e-21 105.9 110 49.1
Cc00_g34060 Coffea canephora HOM05D004281 ORTHO05D004839 5.5e-21 105.5 73 71.2
TAR362G0423 Trochodendron aralioides HOM05D004281 ORTHO05D004839 2.1e-20 103.6 72 72.2
BcaC05g25876 Brassica carinata HOM05D004281 ORTHO05D004839 9.0e-16 88.2 86 51.2
Cc00_g15810 Coffea canephora HOM05D004281 ORTHO05D004839 9.3e-13 78.2 52 73.1
Cc00_g15820 Coffea canephora HOM05D004281 ORTHO05D004839 1.6e-12 77.4 64 57.8
QL08p018107 Quercus lobata HOM05D004281 ORTHO05D004839 1.0e-11 74.7 47 72.3
Cc00_g25460 Coffea canephora HOM05D004281 ORTHO05D004839 2.3e-11 73.6 42 83.3
Cc05_g00900 Coffea canephora HOM05D004281 ORTHO05D004839 3.0e-11 73.2 42 81.0
Lsat_1_v5_gn_8_13760 Lactuca sativa HOM05D004281 ORTHO05D004839 1.6e-09 67.4 125 38.4
Actinidia34560 Actinidia chinensis HOM05D028692 ORTHO05D015213 5.9e-07 58.9 38 68.4
Cfa027194 Carpinus fangiana HOM05D004281 ORTHO05D004839 7.7e-07 58.5 136 27.9
AagrBONN_evm.TU.Sc2ySwM_344.4461 Anthoceros agrestis HOM05D004281 ORTHO05D004839 1.7e-06 57.4 78 42.3


User provided reference genes

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