Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0015375 Sechium edule HOM05D007522 ORTHO05D009518 1.2e-147 526.6 285 100.0
MELO3C011219.2 Cucumis melo HOM05D007522 ORTHO05D009518 1.8e-111 406.4 281 80.4
CsaV3_2G031690 Cucumis sativus L. HOM05D007522 ORTHO05D009518 5.4e-103 378.3 254 81.1
QL12p031480 Quercus lobata HOM05D007522 ORTHO05D009518 2.8e-75 286.2 260 60.8
CiPaw.07G218500 Carya illinoinensis HOM05D007522 ORTHO05D009518 5.3e-74 282.0 269 59.5
TAR383G0977 Trochodendron aralioides HOM05D007522 ORTHO05D009518 1.7e-72 276.9 270 58.1
GSVIVG01035795001 Vitis vinifera HOM05D007522 ORTHO05D009518 1.9e-71 273.5 266 56.0
FAN15G2839 Fragaria x ananassa HOM05D007522 ORTHO05D009518 3.9e-69 265.8 260 56.9
FvH4_2g30000 Fragaria vesca HOM05D007522 ORTHO05D009518 5.1e-69 265.4 260 56.5
Potri.006G247900 Populus trichocarpa HOM05D007522 ORTHO05D009518 3.3e-68 262.7 272 57.0
CSS0007980 Camellia sinensis var. sinensis HOM05D007522 ORTHO05D009518 4.3e-68 262.3 270 54.4
Gohir.D13G209500 Gossypium hirsutum HOM05D007522 ORTHO05D009518 2.1e-67 260.0 283 51.9
arahy.Tifrunner.gnm1.ann1.J4BCXN Arachis hypogaea HOM05D007522 ORTHO05D009518 2.8e-67 259.6 267 53.9
Actinidia13430 Actinidia chinensis HOM05D007522 ORTHO05D009518 8.1e-67 258.1 254 57.1
Gorai.013G238600 Gossypium raimondii HOM05D007522 ORTHO05D009518 1.8e-66 256.9 283 51.6
Manes.03G065616 Manihot esculenta HOM05D007522 ORTHO05D009518 1.8e-66 256.9 271 56.1
Gohir.A13G204200 Gossypium hirsutum HOM05D007522 ORTHO05D009518 2.4e-66 256.5 283 51.9
COL.COLO4_24044 Corchorus olitorius HOM05D007522 ORTHO05D009518 1.2e-65 254.2 271 54.2
Prupe.1G467900 Prunus persica HOM05D007522 ORTHO05D009518 3.4e-65 252.7 259 56.0
RcHm_v2.0_Chr6g0312911 Rosa chinensis HOM05D007522 ORTHO05D009518 3.4e-65 252.7 260 53.8
Sp7g30340 Schrenkiella parvula HOM05D007522 ORTHO05D009518 3.4e-65 252.7 264 54.5
Ciclev10009234m.g Citrus clementina HOM05D007522 ORTHO05D009518 2.9e-64 249.6 249 57.4
Glyma.06G072500 Glycine max HOM05D007522 ORTHO05D009518 6.4e-64 248.4 272 50.4
Carub.0007s0799 Capsella rubella HOM05D007522 ORTHO05D009518 1.4e-63 247.3 265 52.8
CARHR240530 Cardamine hirsuta HOM05D007522 ORTHO05D009518 4.2e-63 245.7 264 52.7
FAN24G0147 Fragaria x ananassa HOM05D007522 ORTHO05D009518 7.1e-63 245.0 250 54.4
C01p06400 Brassica napus HOM05D007522 ORTHO05D009518 9.3e-63 244.6 260 54.6
A01p05830 Brassica napus HOM05D007522 ORTHO05D009518 1.2e-62 244.2 291 51.9
Thhalv10025779m.g Eutrema salsugineum HOM05D007522 ORTHO05D009518 1.2e-62 244.2 269 51.7
BraA01t00551Z Brassica rapa HOM05D007522 ORTHO05D009518 2.1e-62 243.4 290 51.7
AT4G32560 Arabidopsis thaliana HOM05D007522 ORTHO05D009518 3.5e-62 242.7 282 51.4
Aa31LG4G11730 Aethionema arabicum HOM05D007522 ORTHO05D009518 4.6e-62 242.3 284 50.7
BolC1t00636H Brassica oleracea HOM05D007522 ORTHO05D009518 7.9e-62 241.5 281 52.3
Oeu014660.1 Olea europaea HOM05D007522 ORTHO05D009518 7.9e-62 241.5 280 50.4
AL7G19200 Arabidopsis lyrata HOM05D007522 ORTHO05D009518 1.8e-61 240.4 264 52.3
Duzib187G1360 Durio zibethinus HOM05D007522 ORTHO05D009518 2.3e-61 240.0 231 56.3
TPR.G34679 Trifolium pratense HOM05D007522 ORTHO05D009518 2.3e-61 240.0 267 49.4
BcaC09g52047 Brassica carinata HOM05D007522 ORTHO05D009518 3.0e-61 239.6 289 50.9
Medtr3g108530 Medicago truncatula HOM05D007522 ORTHO05D009518 3.0e-61 239.6 263 51.3
THA.LOC104819887 Tarenaya hassleriana HOM05D007522 ORTHO05D009518 3.9e-61 239.2 298 48.0
Lj1g0002015 Lotus japonicus HOM05D007522 ORTHO05D009518 5.1e-61 238.8 274 49.6
HanXRQChr13g0402121 Helianthus annuus HOM05D007522 ORTHO05D009518 6.7e-61 238.4 262 51.9
Sabra06G0193900 Salix brachista HOM05D007522 ORTHO05D009518 1.1e-60 237.7 256 54.7
Eucgr.C02839 Eucalyptus grandis HOM05D007522 ORTHO05D009518 3.3e-60 236.1 259 52.1
ATR0083G062 Amborella trichopoda HOM05D007522 ORTHO05D009518 2.8e-59 233.0 269 49.8
MD15G1116400 Malus domestica HOM05D007522 ORTHO05D009518 3.7e-59 232.6 261 52.1
Phvul.009G097000 Phaseolus vulgaris HOM05D007522 ORTHO05D009518 6.9e-58 228.4 262 48.9
Eucgr.C02850 Eucalyptus grandis HOM05D007522 ORTHO05D009518 9.0e-58 228.0 256 51.2
Ca_15704_v3 Cicer arietinum L. HOM05D000186 ORTHO05D001124 1.2e-57 227.6 270 48.9
arahy.Tifrunner.gnm1.ann1.EE81AI Arachis hypogaea HOM05D007522 ORTHO05D009518 2.0e-57 226.9 219 56.2
PGR044G0714 Punica granatum HOM05D007522 ORTHO05D009518 1.3e-56 224.2 270 47.8
Cc11_g01290 Coffea canephora HOM05D007522 ORTHO05D009518 2.2e-56 223.4 216 58.8
Lalb_Chr08g0243841 Lupinus albus HOM05D007522 ORTHO05D009518 2.9e-56 223.0 262 49.2
PSO782G1743 Papaver somniferum HOM05D007522 ORTHO05D009518 4.9e-56 222.2 269 50.9
Nn8g39310 Nelumbo nucifera HOM05D007522 ORTHO05D009518 4.2e-55 219.2 270 50.0
ECA233G0736 Erigeron canadensis HOM05D007522 ORTHO05D009518 5.5e-55 218.8 258 51.6
MSTRG.25867 Avicennia marina HOM05D007522 ORTHO05D009518 7.9e-54 214.9 255 50.2
Peaxi162Scf00267g00097 Petunia axillaris HOM05D007522 ORTHO05D009518 1.0e-53 214.5 263 50.6
VMungo1309G1471 Vigna mungo HOM05D007522 ORTHO05D009518 1.0e-53 214.5 243 49.4
Sopen06g006080 Solanum pennellii HOM05D007522 ORTHO05D009518 1.1e-52 211.1 255 49.8
Atru.chr7.2341 Acer truncatum HOM05D007522 ORTHO05D009518 7.4e-52 208.4 187 61.0
Aqoxy2G01954 Aquilegia oxysepala HOM05D007522 ORTHO05D009518 7.4e-52 208.4 244 52.9
FAN27G1610 Fragaria x ananassa HOM05D007522 ORTHO05D009518 7.4e-52 208.4 224 52.7
Thecc.09G145600 Theobroma cacao HOM05D007522 ORTHO05D009518 7.4e-52 208.4 250 50.0
Solyc06g011403.1 Solanum lycopersicum HOM05D007522 ORTHO05D009518 1.6e-51 207.2 255 48.6
Migut.A00284 Erythranthe guttata HOM05D007522 ORTHO05D009518 2.4e-50 203.4 259 47.9
PSO063G3677 Papaver somniferum HOM05D007522 ORTHO05D009518 3.1e-50 203.0 255 49.8
Lsat_1_v5_gn_6_22860 Lactuca sativa HOM05D007522 ORTHO05D009518 1.5e-49 200.7 244 49.6
EL10Ac2g02553 Beta vulgaris HOM05D007522 ORTHO05D009518 4.5e-49 199.1 240 47.5
Rhsim02G0189000 Rhododendron simsii HOM05D007522 ORTHO05D009518 4.9e-48 195.7 209 54.1
Eucgr.C02854 Eucalyptus grandis HOM05D007522 ORTHO05D009518 9.3e-47 191.4 224 50.9
CANSAT11G2673 Cannabis sativa HOM05D007522 ORTHO05D009518 1.6e-46 190.7 196 56.1
Eucgr.C02843 Eucalyptus grandis HOM05D007522 ORTHO05D009518 7.9e-46 188.3 229 49.8
Eucgr.L02345 Eucalyptus grandis HOM05D007522 ORTHO05D009518 1.5e-44 184.1 215 50.2
Pp3c10_19840 Physcomitrium patens HOM05D007522 ORTHO05D009518 4.3e-44 182.6 240 45.4
AUR62032367 Chenopodium quinoa HOM05D007522 ORTHO05D009518 2.2e-43 180.3 215 49.8
AagrBONN_evm.TU.Sc2ySwM_117.2977 Anthoceros agrestis HOM05D007522 ORTHO05D009518 1.1e-42 177.9 267 41.2
Dinv30202 Davidia involucrata HOM05D007522 ORTHO05D009518 8.5e-40 168.3 182 53.3
Psat0s1782g0120 Pisum sativum HOM05D007522 ORTHO05D009518 2.5e-39 166.8 212 45.3
Mapoly0015s0053 Marchantia polymorpha HOM05D007522 ORTHO05D009518 3.2e-39 166.4 273 39.9
vmacro11126 Vaccinium macrocarpon HOM05D007522 ORTHO05D009518 7.2e-39 165.2 335 38.5
Cpa.g.sc91.26 Carica papaya HOM05D007522 ORTHO05D009518 1.5e-36 157.5 269 40.9
Ah.10g025820 Amaranthus hybridus HOM05D007522 ORTHO05D009518 8.2e-35 151.8 153 56.2
HPP92_008699 Vanilla planifolia HOM05D002348 ORTHO05D002512 1.4e-34 151.0 264 41.7
CDE02G2364 Ceratophyllum demersum HOM05D007522 ORTHO05D009518 2.9e-32 143.3 146 54.8
Haze_21613 Corylus avellana HOM05D007522 ORTHO05D009518 1.8e-29 134.0 218 41.3
SalBow8G3415 Salvia bowleyana HOM05D007522 ORTHO05D009518 1.5e-28 131.0 106 67.0
MD08G1138500 Malus domestica HOM05D007522 ORTHO05D009518 5.7e-28 129.0 92 76.1
AUR62024852 Chenopodium quinoa HOM05D007522 ORTHO05D009518 9.1e-26 121.7 256 36.7
CBR_g51241 Chara braunii HOM05D007522 ORTHO05D009518 2.5e-23 113.6 271 29.9
CBR_g75925 Chara braunii HOM05D007522 ORTHO05D009518 4.4e-20 102.8 137 41.6
Glyma.04G070700 Glycine max HOM05D007522 ORTHO05D009518 4.2e-15 86.3 129 36.4
SEGI_07807 Sequoiadendron giganteum HOM05D007522 ORTHO05D009518 1.4e-13 81.3 72 59.7
MD08G1138600 Malus domestica HOM05D007522 ORTHO05D009518 1.8e-13 80.9 131 35.9
Glyma.04G070800 Glycine max HOM05D007522 ORTHO05D009518 3.7e-11 73.2 51 66.7
Cfa021321 Carpinus fangiana HOM05D007522 ORTHO05D009518 7.0e-10 68.9 88 46.6


User provided reference genes

Program Settings