Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0015329 Sechium edule HOM05D001606 ORTHO05D009466 9.1e-133 476.9 234 100.0
ClCG05G005160 Citrullus lanatus HOM05D000384 ORTHO05D006260 4.5e-63 245.4 181 68.5
MELO3C022017.2 Cucumis melo HOM05D000384 ORTHO05D006260 4.5e-63 245.4 181 68.0
Sed0025667 Sechium edule HOM05D001606 ORTHO05D009466 5.8e-63 245.0 180 70.6
CsaV3_5G038360 Cucumis sativus L. HOM05D001606 ORTHO05D009466 8.4e-62 241.1 181 68.0
QL06p002449 Quercus lobata HOM05D001606 ORTHO05D009466 5.3e-32 142.1 191 46.1
Eucgr.H03479 Eucalyptus grandis HOM05D001606 ORTHO05D009466 1.3e-30 137.5 188 46.8
MD13G1193200 Malus domestica HOM05D001606 ORTHO05D009466 2.9e-30 136.3 212 43.4
Gorai.005G042900 Gossypium raimondii HOM05D000439 ORTHO05D006172 1.1e-29 134.4 198 45.5
Duzib212G0772 Durio zibethinus HOM05D001606 ORTHO05D009466 1.5e-29 134.0 190 44.2
COL.COLO4_21480 Corchorus olitorius HOM05D001606 ORTHO05D009466 1.9e-29 133.7 190 44.2
Prupe.1G013800 Prunus persica HOM05D001606 ORTHO05D009466 7.2e-29 131.7 213 41.8
Gohir.D02G039000 Gossypium hirsutum HOM05D001606 ORTHO05D009466 1.6e-28 130.6 198 44.9
Manes.03G004700 Manihot esculenta HOM05D001606 ORTHO05D009466 6.1e-28 128.6 202 39.6
RcHm_v2.0_Chr4g0416191 Rosa chinensis HOM05D001606 ORTHO05D009466 1.0e-27 127.9 213 43.7
Haze_00898 Corylus avellana HOM05D001606 ORTHO05D009466 2.3e-27 126.7 190 46.3
CANSAT78G1379 Cannabis sativa HOM05D001606 ORTHO05D009466 3.0e-27 126.3 230 37.4
Thecc.04G232200 Theobroma cacao HOM05D001606 ORTHO05D009466 5.2e-27 125.6 189 43.9
Cfa015647 Carpinus fangiana HOM05D001606 ORTHO05D009466 6.7e-27 125.2 190 45.3
CSS0027080 Camellia sinensis var. sinensis HOM05D001606 ORTHO05D009466 8.8e-27 124.8 199 41.2
CSS0046885 Camellia sinensis var. sinensis HOM05D001606 ORTHO05D009466 8.8e-27 124.8 199 41.2
Ciclev10005268m.g Citrus clementina HOM05D001606 ORTHO05D009466 8.2e-25 118.2 205 38.0
Dinv44537 Davidia involucrata HOM05D000384 ORTHO05D000468 1.4e-24 117.5 203 40.4
CiPaw.01G166200 Carya illinoinensis HOM05D001606 ORTHO05D009466 5.3e-24 115.5 184 42.4
PGR044G2176 Punica granatum HOM05D001606 ORTHO05D009466 5.3e-24 115.5 206 39.3
TWI53G0280 Tripterygium wilfordii HOM05D001606 ORTHO05D009466 7.0e-24 115.2 195 41.5
TAR633G1095 Trochodendron aralioides HOM05D001606 ORTHO05D009466 9.1e-24 114.8 195 41.5
Rhsim02G0025400 Rhododendron simsii HOM05D001606 ORTHO05D009466 1.2e-23 114.4 186 40.9
Potri.008G153100 Populus trichocarpa HOM05D001606 ORTHO05D009466 2.7e-23 113.2 199 39.7
Glyma.11G005600 Glycine max HOM05D001606 ORTHO05D009466 1.0e-22 111.3 181 42.5
CAN.G1965.2 Capsicum annuum HOM05D001606 ORTHO05D009466 1.7e-22 110.5 197 39.6
Cpa.g.sc37.137 Carica papaya HOM05D001606 ORTHO05D009466 2.2e-22 110.2 186 39.2
Phvul.002G045500 Phaseolus vulgaris HOM05D001606 ORTHO05D009466 3.8e-22 109.4 181 41.4
Sabra08G0116700 Salix brachista HOM05D001606 ORTHO05D009466 5.0e-22 109.0 199 39.7
GSVIVG01017980001 Vitis vinifera HOM05D001606 ORTHO05D009466 5.0e-22 109.0 183 37.7
arahy.Tifrunner.gnm1.ann1.V62N89 Arachis hypogaea HOM05D001606 ORTHO05D009466 2.5e-21 106.7 175 38.9
arahy.Tifrunner.gnm1.ann1.MT9GWQ Arachis hypogaea HOM05D001606 ORTHO05D009466 4.2e-21 105.9 175 38.9
Sc13g0004400 Simmondsia chinensis HOM05D001606 ORTHO05D009466 4.2e-21 105.9 196 37.2
Atru.chr1.2867 Acer truncatum HOM05D001606 ORTHO05D009466 5.5e-21 105.5 208 38.5
Gohir.A02G032300 Gossypium hirsutum HOM05D001606 ORTHO05D009466 2.1e-20 103.6 125 48.8
FvH4_4g15620 Fragaria vesca HOM05D001606 ORTHO05D009466 8.0e-20 101.7 208 36.1
Nn4g26327 Nelumbo nucifera HOM05D001606 ORTHO05D009466 8.0e-20 101.7 182 36.8
Hund12126 Selenicereus undatus HOM05D001606 ORTHO05D009466 1.0e-19 101.3 213 32.9
VMungo1215G1276 Vigna mungo HOM05D001606 ORTHO05D009466 1.4e-19 100.9 180 38.9
FAN22G1685 Fragaria x ananassa HOM05D001606 ORTHO05D009466 3.0e-19 99.8 208 37.0
MD16G1194100 Malus domestica HOM05D001606 ORTHO05D009466 4.0e-19 99.4 123 46.3
Cc03_g03800 Coffea canephora HOM05D001606 ORTHO05D009466 5.2e-19 99.0 216 33.8
Medtr5g006310 Medicago truncatula HOM05D001606 ORTHO05D009466 6.8e-19 98.6 215 34.9
SGA_v2.0_scaffold7G04181 Striga asiatica HOM05D001606 ORTHO05D009466 8.8e-19 98.2 220 35.5
Sopen03g001190 Solanum pennellii HOM05D001606 ORTHO05D009466 1.5e-18 97.4 197 36.0
Aqoxy2G03392 Aquilegia oxysepala HOM05D001606 ORTHO05D009466 2.0e-18 97.1 190 38.9
Lj3C734T9 Lonicera japonica HOM05D001606 ORTHO05D009466 2.0e-18 97.1 205 33.7
Solyc03g005180.1 Solanum lycopersicum HOM05D001606 ORTHO05D009466 2.0e-18 97.1 190 35.8
MSTRG.25112 Avicennia marina HOM05D001606 ORTHO05D009466 4.4e-18 95.9 215 35.3
Migut.N00185 Erythranthe guttata HOM05D001606 ORTHO05D009466 5.7e-18 95.5 218 33.5
FAN07G1192 Fragaria x ananassa HOM05D001606 ORTHO05D009466 5.7e-18 95.5 208 37.0
HanXRQChr10g0303151 Helianthus annuus HOM05D001606 ORTHO05D009466 5.7e-18 95.5 161 39.8
MBI02_g35758_MAGBIO Magnolia biondii HOM05D000379 ORTHO05D009466 5.7e-18 95.5 214 35.0
Lsat_1_v5_gn_2_32501 Lactuca sativa HOM05D001606 ORTHO05D009466 9.8e-18 94.7 169 34.9
THA.LOC104803026 Tarenaya hassleriana HOM05D001606 ORTHO05D009466 9.8e-18 94.7 185 35.1
Ca_24396_v3 Cicer arietinum L. HOM05D001606 ORTHO05D009466 1.7e-17 94.0 191 37.7
DCAR_024161 Daucus carota HOM05D001606 ORTHO05D009466 1.7e-17 94.0 188 37.8
ECA240G0391 Erigeron canadensis HOM05D001606 ORTHO05D009466 3.7e-17 92.8 162 35.8
SalBow3G2864 Salvia bowleyana HOM05D001606 ORTHO05D009466 6.3e-17 92.0 203 36.0
FAN17G2252 Fragaria x ananassa HOM05D001606 ORTHO05D009466 1.4e-16 90.9 120 46.7
LjContig00408g0015674 Lotus japonicus HOM05D001606 ORTHO05D009466 7.0e-16 88.6 190 31.6
AT3G22450 Arabidopsis thaliana HOM05D001606 ORTHO05D009466 1.2e-15 87.8 160 36.9
AUR62007971 Chenopodium quinoa HOM05D001606 ORTHO05D009466 1.2e-15 87.8 203 35.0
Psat4g210560 Pisum sativum HOM05D001606 ORTHO05D009466 2.0e-15 87.0 198 32.8
PGSC0003DMG400047204 Solanum tuberosum HOM05D001606 ORTHO05D009466 2.7e-15 86.7 205 32.7
Ah.02g126540 Amaranthus hybridus HOM05D001606 ORTHO05D009466 4.5e-15 85.9 207 34.3
AL3G36760 Arabidopsis lyrata HOM05D001606 ORTHO05D009466 4.5e-15 85.9 159 34.6
Carub.0003s2263 Capsella rubella HOM05D001606 ORTHO05D009466 1.0e-14 84.7 173 35.3
SHI00448 Sapria himalayana HOM05D001606 ORTHO05D009466 1.0e-14 84.7 171 36.8
ATR0598G343 Amborella trichopoda HOM05D001606 ORTHO05D009466 1.7e-14 84.0 190 33.7
Aa31LG8G9020 Aethionema arabicum HOM05D001606 ORTHO05D009466 2.9e-14 83.2 178 34.8
TPR.G38004 Trifolium pratense HOM05D001606 ORTHO05D009466 2.9e-14 83.2 148 41.9
Nitab4.5_0008971g0010 Nicotiana tabacum HOM05D001606 ORTHO05D009466 3.8e-14 82.8 197 35.0
Thhalv10021167m.g Eutrema salsugineum HOM05D001606 ORTHO05D009466 6.5e-14 82.0 164 37.2
CARHR098360 Cardamine hirsuta HOM05D001606 ORTHO05D009466 8.6e-14 81.6 180 32.2
Sp3g20220 Schrenkiella parvula HOM05D001606 ORTHO05D009466 8.6e-14 81.6 180 32.8
A01p32640 Brassica napus HOM05D001606 ORTHO05D009466 1.1e-13 81.3 159 36.5
Peaxi162Scf00152g01315 Petunia axillaris HOM05D001606 ORTHO05D009466 1.1e-13 81.3 204 32.4
Actinidia08491 Actinidia chinensis HOM05D001606 ORTHO05D009466 2.5e-13 80.1 105 44.8
Nitab4.5_0000559g0100 Nicotiana tabacum HOM05D001606 ORTHO05D009466 3.2e-13 79.7 200 33.0
BcaB04g20516 Brassica carinata HOM05D001606 ORTHO05D009466 4.2e-13 79.3 164 37.2
BcaC09g49176 Brassica carinata HOM05D001606 ORTHO05D009466 3.6e-12 76.3 159 34.6
C01p41820 Brassica napus HOM05D001606 ORTHO05D009466 3.6e-12 76.3 159 34.6
BolC1t04136H Brassica oleracea HOM05D001606 ORTHO05D009466 3.6e-12 76.3 159 34.6
Lalb_Chr09g0319861 Lupinus albus HOM05D001606 ORTHO05D009466 3.6e-12 76.3 226 30.5
Os10g0484400 Oryza sativa ssp. japonica HOM05D001606 ORTHO05D009466 4.7e-12 75.9 160 36.9
BraA01t03392Z Brassica rapa HOM05D001606 ORTHO05D009466 1.0e-11 74.7 159 34.0
QL02p103284 Quercus lobata HOM05D001606 ORTHO05D009466 1.0e-11 74.7 117 39.3
FAN12G0319 Fragaria x ananassa HOM05D001606 ORTHO05D009466 2.3e-11 73.6 170 33.5
HPP92_025952 Vanilla planifolia HOM05D001606 ORTHO05D009466 2.3e-11 73.6 188 35.1
Glyma.01G238100 Glycine max HOM05D001606 ORTHO05D009466 2.0e-10 70.5 109 45.0
CDE07G1475 Ceratophyllum demersum HOM05D001606 ORTHO05D009466 9.2e-08 61.6 196 30.6
Zm00001eb360500 Zea mays HOM05D001606 ORTHO05D009466 2.0e-07 60.5 131 34.4
unitig_748.g7954 Utricularia gibba HOM05D001606 ORTHO05D009466 5.9e-07 58.9 94 39.4


User provided reference genes

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