Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0015282 Sechium edule HOM05D006634 ORTHO05D008282 1.4e-27 125.6 62 100.0
MELO3C020691.2 Cucumis melo HOM05D006634 ORTHO05D008282 4.3e-21 104.0 87 65.5
CsaV3_1G033740 Cucumis sativus L. HOM05D006634 ORTHO05D008282 4.3e-21 104.0 87 65.5
Sed0017465 Sechium edule HOM05D006634 ORTHO05D008282 9.5e-21 102.8 86 65.1
ClCG03G001830 Citrullus lanatus HOM05D006634 ORTHO05D008282 4.7e-20 100.5 85 65.9
Dinv32744 Davidia involucrata HOM05D006634 ORTHO05D008282 1.0e-14 82.8 86 50.0
Hma1.2p1_0058F.1_g032540 Hydrangea macrophylla HOM05D006634 ORTHO05D008282 6.6e-14 80.1 82 52.4
Glyma.12G067600 Glycine max HOM05D006634 ORTHO05D008282 8.6e-14 79.7 79 51.9
RcHm_v2.0_Chr5g0059081 Rosa chinensis HOM05D006634 ORTHO05D008282 8.6e-14 79.7 86 47.7
CSS0041274 Camellia sinensis var. sinensis HOM05D006634 ORTHO05D008282 1.9e-13 78.6 86 47.7
Nn2g10789 Nelumbo nucifera HOM05D006634 ORTHO05D008282 3.3e-13 77.8 86 51.2
Glyma.11G146700 Glycine max HOM05D006634 ORTHO05D008282 4.3e-13 77.4 80 50.0
Phvul.011G079100 Phaseolus vulgaris HOM05D006634 ORTHO05D008282 4.3e-13 77.4 80 50.0
Atru.chr3.3630 Acer truncatum HOM05D006634 ORTHO05D008282 5.6e-13 77.0 86 45.3
Lalb_Chr19g0137281 Lupinus albus HOM05D006634 ORTHO05D008282 5.6e-13 77.0 82 48.8
Prupe.6G101400 Prunus persica HOM05D006634 ORTHO05D008282 7.3e-13 76.6 86 47.7
GSVIVG01025186001 Vitis vinifera HOM05D006634 ORTHO05D008282 7.3e-13 76.6 86 47.7
CiPaw.13G113000 Carya illinoinensis HOM05D006634 ORTHO05D008282 9.5e-13 76.3 86 44.2
MD03G1117700 Malus domestica HOM05D006634 ORTHO05D008282 9.5e-13 76.3 84 46.4
arahy.Tifrunner.gnm1.ann1.RYN47D Arachis hypogaea HOM05D006634 ORTHO05D008282 1.2e-12 75.9 82 50.0
CDE06G1545 Ceratophyllum demersum HOM05D006634 ORTHO05D008282 1.2e-12 75.9 83 48.2
Psat7g225160 Pisum sativum HOM05D006634 ORTHO05D008282 1.2e-12 75.9 82 50.0
SalBow3G1265 Salvia bowleyana HOM05D006634 ORTHO05D008282 1.6e-12 75.5 80 48.8
TPR.G15540 Trifolium pratense HOM05D006634 ORTHO05D008282 1.6e-12 75.5 82 48.8
CSS0031934 Camellia sinensis var. sinensis HOM05D006634 ORTHO05D008282 2.8e-12 74.7 86 46.5
HanXRQChr02g0031651 Helianthus annuus HOM05D006634 ORTHO05D008282 4.7e-12 73.9 83 53.0
MD11G1136000 Malus domestica HOM05D006634 ORTHO05D008282 4.7e-12 73.9 84 45.2
TWI79G0418 Tripterygium wilfordii HOM05D006634 ORTHO05D008282 4.7e-12 73.9 85 48.2
unitig_21.g20301 Utricularia gibba HOM05D006634 ORTHO05D008282 6.2e-12 73.6 80 48.8
vmacro14436 Vaccinium macrocarpon HOM05D006634 ORTHO05D008282 6.2e-12 73.6 82 48.8
arahy.Tifrunner.gnm1.ann1.8AEA4E Arachis hypogaea HOM05D006634 ORTHO05D008282 1.4e-11 72.4 91 45.1
CANSAT54G0287 Cannabis sativa HOM05D006634 ORTHO05D008282 1.4e-11 72.4 86 45.3
CANSAT54G1094 Cannabis sativa HOM05D006634 ORTHO05D008282 1.4e-11 72.4 86 45.3
Medtr4g459450 Medicago truncatula HOM05D006634 ORTHO05D008282 1.4e-11 72.4 82 46.3
CANSAT54G0497 Cannabis sativa HOM05D006634 ORTHO05D008282 1.8e-11 72.0 87 44.8
CANSAT54G1359 Cannabis sativa HOM05D006634 ORTHO05D008282 1.8e-11 72.0 87 44.8
CANSAT54G1657 Cannabis sativa HOM05D006634 ORTHO05D008282 1.8e-11 72.0 87 44.8
CANSAT54G2640 Cannabis sativa HOM05D006634 ORTHO05D008282 1.8e-11 72.0 87 44.8
CANSAT54G2841 Cannabis sativa HOM05D006634 ORTHO05D008282 1.8e-11 72.0 87 44.8
Lj3g0007397 Lotus japonicus HOM05D006634 ORTHO05D008282 1.8e-11 72.0 82 46.3
ECA238G2380 Erigeron canadensis HOM05D006634 ORTHO05D008282 4.0e-11 70.9 86 50.0
PGR102G2188 Punica granatum HOM05D006634 ORTHO05D008282 4.0e-11 70.9 86 43.0
Actinidia03728 Actinidia chinensis HOM05D006634 ORTHO05D008282 5.2e-11 70.5 84 47.6
HanXRQChr14g0452861 Helianthus annuus HOM05D006634 ORTHO05D008282 5.2e-11 70.5 80 48.8
Rhsim01G0216700 Rhododendron simsii HOM05D006634 ORTHO05D008282 5.2e-11 70.5 82 46.3
Lsat_1_v5_gn_2_98520 Lactuca sativa HOM05D006634 ORTHO05D008282 6.8e-11 70.1 82 51.2
CDE07G0066 Ceratophyllum demersum HOM05D006634 ORTHO05D008282 1.5e-10 68.9 80 46.2
AUR62039638 Chenopodium quinoa HOM05D006634 ORTHO05D008282 2.0e-10 68.6 86 46.5
CANSAT54G1506 Cannabis sativa HOM05D006634 ORTHO05D008282 2.6e-10 68.2 87 43.7
Sabra04G0142400 Salix brachista HOM05D006634 ORTHO05D008282 3.4e-10 67.8 79 44.3
Eucgr.B02497 Eucalyptus grandis HOM05D006634 ORTHO05D008282 4.4e-10 67.4 86 43.0
Nitab4.5_0000650g0190 Nicotiana tabacum HOM05D006634 ORTHO05D008282 4.4e-10 67.4 86 46.5
Gohir.A08G197800 Gossypium hirsutum HOM05D006634 ORTHO05D008282 5.8e-10 67.0 80 46.2
Gorai.004G228800 Gossypium raimondii HOM05D006634 ORTHO05D008282 5.8e-10 67.0 80 46.2
Sopen11g028130 Solanum pennellii HOM05D006634 ORTHO05D008282 7.5e-10 66.6 86 45.3
Aa31LG5G7790 Aethionema arabicum HOM05D006634 ORTHO05D008282 9.8e-10 66.2 86 45.3
CARHR121380 Cardamine hirsuta HOM05D006634 ORTHO05D008282 9.8e-10 66.2 86 45.3
Solyc11g069410.2 Solanum lycopersicum HOM05D006634 ORTHO05D008282 1.3e-09 65.9 86 45.3
Peaxi162Scf00270g00818 Petunia axillaris HOM05D006634 ORTHO05D008282 1.7e-09 65.5 87 43.7
Potri.004G210800 Populus trichocarpa HOM05D006634 ORTHO05D008282 1.7e-09 65.5 78 43.6
BcaB06g28214 Brassica carinata HOM05D006634 ORTHO05D008282 2.2e-09 65.1 82 47.6
Carub.0004s0938 Capsella rubella HOM05D006634 ORTHO05D008282 2.9e-09 64.7 86 45.3
Duzib150G1350 Durio zibethinus HOM05D006634 ORTHO05D008282 3.7e-09 64.3 86 43.0
FvH4_3g32290 Fragaria vesca HOM05D006634 ORTHO05D008282 3.7e-09 64.3 86 39.5
FAN11G2087 Fragaria x ananassa HOM05D006634 ORTHO05D008282 3.7e-09 64.3 86 39.5
Sp4g11250 Schrenkiella parvula HOM05D006634 ORTHO05D008282 3.7e-09 64.3 86 44.2
AUR62024980 Chenopodium quinoa HOM05D006634 ORTHO05D008282 4.9e-09 63.9 86 45.3
Gorai.009G107000 Gossypium raimondii HOM05D006634 ORTHO05D008282 4.9e-09 63.9 86 40.7
FAN21G3892 Fragaria x ananassa HOM05D006634 ORTHO05D008282 6.4e-09 63.5 86 38.4
Gohir.D08G215200 Gossypium hirsutum HOM05D006634 ORTHO05D008282 8.3e-09 63.2 80 45.0
A07p19000 Brassica napus HOM05D006634 ORTHO05D008282 1.1e-08 62.8 86 43.0
C04p22950 Brassica napus HOM05D006634 ORTHO05D008282 1.1e-08 62.8 87 43.7
BolC4t23789H Brassica oleracea HOM05D006634 ORTHO05D008282 1.1e-08 62.8 86 43.0
BraA07t29605Z Brassica rapa HOM05D006634 ORTHO05D008282 1.1e-08 62.8 86 43.0
Gohir.A05G103000 Gossypium hirsutum HOM05D006634 ORTHO05D008282 1.4e-08 62.4 86 39.5
Manes.11G145100 Manihot esculenta HOM05D006634 ORTHO05D008282 1.4e-08 62.4 83 39.8
BcaNung07072 Brassica carinata HOM05D006634 ORTHO05D008282 1.9e-08 62.0 86 43.0
Oeu002870.2 Olea europaea HOM05D006634 ORTHO05D008282 1.9e-08 62.0 88 37.5
THA.LOC104800608 Tarenaya hassleriana HOM05D006634 ORTHO05D008282 2.4e-08 61.6 86 40.7
Aqoxy2G01632 Aquilegia oxysepala HOM05D006634 ORTHO05D008282 3.2e-08 61.2 85 41.2
AL4G21590 Arabidopsis lyrata HOM05D006634 ORTHO05D008282 3.2e-08 61.2 86 43.0
Gohir.D05G102700 Gossypium hirsutum HOM05D006634 ORTHO05D008282 3.2e-08 61.2 86 39.5
Duzib168G0710 Durio zibethinus HOM05D006634 ORTHO05D008282 4.1e-08 60.8 86 39.5
Thhalv10017488m.g Eutrema salsugineum HOM05D006634 ORTHO05D008282 5.4e-08 60.5 87 42.5
AT2G28430 Arabidopsis thaliana HOM05D006634 ORTHO05D008282 7.1e-08 60.1 86 44.2
Cpa.g.sc216.10 Carica papaya HOM05D006634 ORTHO05D008282 9.2e-08 59.7 75 45.3
Ciclev10029701m.g Citrus clementina HOM05D006634 ORTHO05D008282 9.2e-08 59.7 38 60.5
THA.LOC104826362 Tarenaya hassleriana HOM05D006634 ORTHO05D008282 9.2e-08 59.7 85 41.2
Thecc.09G340600 Theobroma cacao HOM05D006634 ORTHO05D008282 9.2e-08 59.7 80 40.0
Lalb_Chr03g0027351 Lupinus albus HOM05D006634 ORTHO05D008282 1.2e-07 59.3 77 44.2
Manes.04G021400 Manihot esculenta HOM05D006634 ORTHO05D008282 1.2e-07 59.3 83 39.8
QL01p022236 Quercus lobata HOM05D006634 ORTHO05D008282 2.1e-07 58.5 38 57.9
Zm00001eb045570 Zea mays HOM05D006634 ORTHO05D008282 2.1e-07 58.5 84 40.5
Zm00001eb221580 Zea mays HOM05D006634 ORTHO05D008282 2.1e-07 58.5 84 40.5
Actinidia25419 Actinidia chinensis HOM05D006634 ORTHO05D008282 4.6e-07 57.4 39 56.4
FAN25G2760 Fragaria x ananassa HOM05D006634 ORTHO05D008282 7.8e-07 56.6 85 32.9
Os10g0481400 Oryza sativa ssp. japonica HOM05D006634 ORTHO05D008282 2.3e-06 55.1 89 41.6
Ah.01g002900 Amaranthus hybridus HOM05D006634 ORTHO05D008282 3.9e-06 54.3 47 48.9
BolC4t27285H Brassica oleracea HOM05D006634 ORTHO05D008282 5.1e-06 53.9 82 37.8
BraA04t17721Z Brassica rapa HOM05D006634 ORTHO05D008282 5.1e-06 53.9 82 37.8
Cc01_g11130 Coffea canephora HOM05D006634 ORTHO05D008282 8.6e-06 53.1 39 51.3
FAN16G1798 Fragaria x ananassa HOM05D006634 ORTHO05D008282 8.6e-06 53.1 79 34.2


User provided reference genes

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